Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
116,911 results • Page
4 of 2339
Sort: Votes
Rank
Views
Votes
Replies
95
votes
6
replies
37k
views
In Sam Format, Clarify The Meaning Of The "0" Flag.
sam
updated 13.1 years ago by
Jts
★ 1.4k • written 13.1 years ago by
tflutre
▴ 580
95
votes
5
replies
55k
views
Difference between Hard Clip and Soft Clip in Samtools CIGAR string
samtools
clipped-reads
soft-clip
bam
hard-clip
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
QVINTVS_FABIVS_MAXIMVS
★ 2.5k
94
votes
31
replies
39k
views
17 follow
What Is The Quickest Algorithm For Range Overlap?
python
alignment
next-gen
sequencing
database
updated 2.1 years ago by
Ram
43k • written 13.7 years ago by
User 1586
▴ 280
94
votes
50
replies
53k
views
16 follow
PCA plot from read count matrix from RNA-Seq
RNA-Seq
pca
updated 2.5 years ago by
BioNovice247
▴ 20 • written 6.5 years ago by
rachel.kubik12
▴ 220
94
votes
16
replies
23k
views
15 follow
Are we tricking ourselves with batch effect correction?
combat
batch-effect
sva
updated 15 months ago by
madbadradscientist
▴ 20 • written 9.0 years ago by
Christian
★ 3.0k
93
votes
19
replies
60k
views
18 follow
What Is A Good Phylogenetic Tree Display Program For Large Data Sets?
phylogenetics-tree
updated 10 months ago by
Ram
43k • written 13.7 years ago by
Niek De Klein
★ 2.6k
93
votes
23
replies
93k
views
15 follow
Tutorial:
How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
bcftools
samtools
htslib
updated 3 months ago by
clara.apicella
• 0 • written 5.8 years ago by
otwtgin2010
▴ 610
93
votes
18
replies
70k
views
12 follow
Sequence length from Fasta
fasta
updated 16 months ago by
Ram
43k • written 9.5 years ago by
bongbang
▴ 80
93
votes
50
replies
16k
views
17 follow
Forum:
Fda Sends A Warning Letter To 23Andme - Personal Genomics Service Marketing To Be Discontinued
personal-genomics
23andMe
updated 14 months ago by
Ram
43k • written 10.5 years ago by
Istvan Albert
100k
93
votes
32
replies
33k
views
26 follow
Linux Distros Best Suited For Bioinformatics?
linux
written 12.3 years ago by
Sat3Lite
▴ 150
92
votes
20
replies
28k
views
13 follow
Is There Any R Or R / Bioconductor Package That Can Make Circular Plots Like Perl / Circos
r
visualization
updated 24 months ago by
Ram
43k • written 12.2 years ago by
John
★ 1.5k
92
votes
46
replies
12k
views
28 follow
Best Language For Introductory Programming Course From Within An Introduction Course On Bioinformatics.
programming
subjective
updated 15 months ago by
Ram
43k • written 12.9 years ago by
Andra Waagmeester
3.2k
91
votes
20
replies
20k
views
15 follow
Forum:
Publications for individualized medicine in cancer by whole genome, exome or transcriptome sequencing
N-of-one
WGS
RNA-Seq
next-gen
Exome
updated 19 months ago by
Ram
43k • written 10.0 years ago by
Obi Griffith
20k
91
votes
10
replies
108k
views
11 follow
Best Way To Do Pathway Analysis Of A Set Of Genes?
protein
genes
pathway
analysis
function
updated 12.1 years ago by
Guangchuang Yu
★ 2.6k • written 12.1 years ago by
Wayne
★ 1.0k
91
votes
21
replies
54k
views
13 follow
Should We Remove Duplicated Reads In Rna-Seq ?
rna-seq
read
updated 10.4 years ago by
earonesty
▴ 250 • written 11.6 years ago by
siddharth.sethi5
▴ 270
91
votes
25
replies
62k
views
18 follow
Best Practices/Softwares To Calculate Ka/Ks Ratio
kaks
selection
software
updated 20 months ago by
Michael
54k • written 13.2 years ago by
Jarretinha
3.4k
90
votes
26
replies
39k
views
22 follow
Extracting Sequence From A 3Gb Fasta File
sequence
retrieval
fasta
perl
updated 6.3 years ago by
andplaia
• 0 • written 14.0 years ago by
Divya
▴ 260
90
votes
19
replies
32k
views
12 follow
Tutorial:
Machine Learning For Cancer Classification - Part 1 - Preparing The Data Sets
microarray
bioconductor
expression
classification
updated 14 months ago by
Ram
43k • written 10.5 years ago by
Obi Griffith
20k
90
votes
44
replies
60k
views
28 follow
Tool to generate proportional Venn Diagrams?
visualization
updated 2.1 years ago by
Ram
43k • written 13.1 years ago by
Ryan D
★ 3.4k
90
votes
48
replies
34k
views
29 follow
Tutorial:
Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
fpkm
rna-seq
bioconductor
updated 6 months ago by
Ram
43k • written 10.6 years ago by
Irsan
★ 7.8k
89
votes
12
replies
21k
views
9 follow
What Do Different Bioinformatics Positions Mean?
career
general
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Yuri
★ 1.7k
89
votes
31
replies
14k
views
23 follow
Best Graphics Gallery Or Blogs For Bioinformatics Use
graphs
visualization
genomics
updated 21 months ago by
Ram
43k • written 12.2 years ago by
John
★ 1.5k
88
votes
24
replies
5.6k
views
10 follow
Forum:
How To Be Helpful As A Biostar Moderator/Editor?
biostars
updated 15 months ago by
Ram
43k • written 11.2 years ago by
aidan-budd
1.9k
88
votes
36
replies
40k
views
15 follow
1000 Genomes Ld Calculation
genome
linkage
gwas
updated 10.2 years ago by
Leandro Lima
▴ 970 • written 13.6 years ago by
Ryan D
★ 3.4k
88
votes
32
replies
9.6k
views
11 follow
Forum:
Vintage / unconventional pictures for Bioinformatics
history
picture
updated 2.1 years ago by
Ram
43k • written 9.6 years ago by
Pierre Lindenbaum
161k
88
votes
24
replies
9.8k
views
14 follow
Project Euler Equivalent For Bioinformatics?
online
updated 7.3 years ago by
Biostar
20 • written 13.8 years ago by
Gabriel Mitchell
▴ 520
87
votes
24
replies
23k
views
17 follow
Tutorial:
Gene Set Enrichment Analysis
microarray
enrichment
RNA-Seq
GSEA
updated 25 days ago by
Gordon
• 0 • written 3.6 years ago by
Hamid Ghaedi
3.2k
87
votes
12
replies
56k
views
9 follow
What are chimeric reads?
sequence
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
zhangz.cs
▴ 300
87
votes
37
replies
52k
views
20 follow
Venn/Euler Diagram Of Four Or More Sets
r
updated 2.2 years ago by
Ram
43k • written 10.8 years ago by
Hunter
▴ 110
87
votes
11
replies
19k
views
8 follow
Good Gwas Papers / Resources
gwas
literature
snp
updated 13.8 years ago by
Larry_Parnell
16k • written 13.8 years ago by
brentp
24k
87
votes
25
replies
52k
views
21 follow
How To Split A Multiple Fasta
fasta
split
updated 2.3 years ago by
Ram
43k • written 13.7 years ago by
Gvj
▴ 470
87
votes
2
replies
59k
views
6 follow
Tutorial:
How To Ask Good Questions On Technical And Scientific Forums
how-to
updated 14 months ago by
Ram
43k • written 10.9 years ago by
Eric Normandeau
11k
86
votes
29
replies
10.0k
views
9 follow
Forum:
What is the future of EMBL-EBI (and European bioinformatics in general) in case of a 'Brexit'?
EU
brexit
EBI
politics
updated 13 months ago by
Ram
43k • written 7.9 years ago by
Michael
54k
85
votes
49
replies
10k
views
31 follow
Which Application Is Truly Missing In Bioinformatics?
subjective
general
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Jarretinha
3.4k
85
votes
16
replies
97k
views
9 follow
Number of mapped reads from BAM file
bam
sam
reads
mapping
updated 17 months ago by
bhanu.chandra1
▴ 50 • written 9.1 years ago by
Prakki Rama
★ 2.7k
85
votes
19
replies
44k
views
17 follow
How To Assess The Quality Of An Assembly? (Is There No Magic Formula?)
assembly
quality
next-gen
updated 2.3 years ago by
WANG
▴ 10 • written 11.3 years ago by
diltsjeri
▴ 470
84
votes
36
replies
19k
views
13 follow
Forum:
Benchmark - Comparison of Different NGS Mappers
mRNA-Seq
benchmark
NGS-mapper
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
David Langenberger
11k
84
votes
29
replies
32k
views
20 follow
Tutorial:
How to create a mutation landscape (waterfall) plot with GenVisR
BioConductor
GenVisR
Graphics
R
updated 9 months ago by
amziepickles
• 0 • written 8.2 years ago by
Obi Griffith
20k
84
votes
22
replies
4.6k
views
12 follow
Forum:
is fortran still used in bioinformatics?
FORTRAN
R
updated 14 months ago by
Ram
43k • written 4.9 years ago by
Manoj
▴ 190
83
votes
34
replies
19k
views
22 follow
Tutorial:
Enrichment Analysis, Clustering and Scoring with pathfindR
enrichment
R
pathway
active-subnetwork
updated 11 months ago by
adelheidkratzer
• 0 • written 5.9 years ago by
egeulgen
★ 1.3k
83
votes
20
replies
20k
views
17 follow
How Do Pathway Databases Compare?
pathway
database
subjective
updated 9 months ago by
Peter Karp
▴ 30 • written 13.5 years ago by
Shigeta
▴ 470
83
votes
46
replies
9.1k
views
15 follow
Tool:
ChatGPT optimized for bioinformatics questions
gpt
updated 8 weeks ago by
LauferVA
4.2k • written 11 months ago by
Sasha
▴ 840
83
votes
30
replies
6.8k
views
18 follow
Forum:
Optimal design for bioinformatics "lab" space?
design
lab-space
updated 22 months ago by
Ram
43k • written 9.1 years ago by
Casey Bergman
18k
82
votes
13
replies
41k
views
7 follow
Ti/Tv Ratio Confirms Snp Discovery. Is This A General Rule?
snp
snp
updated 3.7 years ago by
Biostar
20 • written 13.4 years ago by
Yahan
▴ 210
82
votes
27
replies
54k
views
23 follow
Renaming Entries In A Fasta File
fasta
updated 8.0 years ago by
noirot.celine
▴ 50 • written 11.7 years ago by
thiago84naka
▴ 130
82
votes
19
replies
13k
views
8 follow
Future Directions In Bioinformatics
subjective
career
updated 15 months ago by
Ram
43k • written 13.5 years ago by
Hranjeev
★ 1.5k
82
votes
11
replies
30k
views
10 follow
Qiime Vs Mothur : Why Use One Over The Other?
metagenomics
updated 7.6 years ago by
shizhaojingszj
• 0 • written 10.2 years ago by
amcrisan
▴ 370
82
votes
32
replies
7.8k
views
13 follow
Forum:
Shall We Go Back To Stackexchange?
meta
updated 14 months ago by
Ram
43k • written 11.5 years ago by
14134125465346445
★ 3.6k
81
votes
8
replies
8.6k
views
6 follow
Tutorial:
Current Topics in Genome Analysis 2014 (collection of educational lectures)
workshop
lectures
genomics
training
updated 14 months ago by
Ram
43k • written 9.9 years ago by
Malachi Griffith
20k
81
votes
21
replies
5.1k
views
16 follow
Forum:
[UPDATE] Thrown into a Bioinformatics Position
bioinformatics
updated 14 months ago by
Ram
43k • written 7.9 years ago by
Sinji
★ 3.2k
116,911 results • Page
4 of 2339
Recent Votes
Comment: How does gene length effect the number of reads mapped
Comment: How does gene length effect the number of reads mapped
Comment: How does gene length effect the number of reads mapped
Comment: How does gene length effect the number of reads mapped
A: Filtering of VCF, INFO DP or FORMAT DP
What is the difference between GRCh37 and hs37? And hg19?
Answer: Duplicated sequence samtools
Recent Locations •
All
Canada,
7 minutes ago
South Korea,
8 minutes ago
Russia,
10 minutes ago
United Kingdom,
11 minutes ago
United States,
11 minutes ago
United Kingdom,
13 minutes ago
United States,
22 minutes ago
Recent Awards •
All
Popular Question
to
RNAseqer
▴ 270
Scholar
to
kalavattam
▴ 190
Scholar
to
dthorbur
★ 2.0k
Commentator
to
Santosh Anand
5.7k
Popular Question
to
lagartija
▴ 160
Popular Question
to
bioinfo
▴ 150
Popular Question
to
Sara
▴ 30
Recent Replies
Comment: How does gene length effect the number of reads mapped
by
Chen
• 0
thank you :)
Answer: Filtering based on alternate allelic balance
by
Arton
• 0
I found the answer when using bcftools. Is there is a way to do this with FilterVcf? bcftools filter --include '(FMT/AD[0:1])/(FMT/A…
Comment: Help with IGV abbreviation
by
GenoMax
142k
Those are SAM format fields. Check section 1.4 here: https://samtools.github.io/hts-specs/SAMv1.pdf > 1:2114:12111:13792 That is part of …
Answer: Help with IGV abbreviation
by
Mathew
▴ 120
Hi, here is a breakdown of each part that you asked about: **flag 99**: This indicates various properties of the read alignment. In this c…
Comment: Kraken2 database
by
Mathew
▴ 120
I don't see any databases with just pathogenic bacteria genomes from just a quick search, I would imagine that using the Standard-16 databa…
Comment: Galaxy StringTie error
by
Mathew
▴ 120
I am not sure if this is true for Galaxy, but when I code in Python, SyntaxWarning: invalid escape sequence '' occurs when you want to add …
Comment: Can diamond prepdb be used to make a taxonomically aware database?
by
GenoMax
142k
Should be possible: https://www.biostars.org/p/430366/ Are you using an older version of `diamond`? Latest versions of `diamond` can use N…
Comment: SNPEff database building error
by
Fungal genetics
• 0
Hi, Below SNPEff database building error I am getting. "FATAL ERROR: Most Exons do not have sequences!" The headers are correct and sam…
Comment: Extracting named fasta sequences according to list with Biopython
by
Rubayetul
• 0
the last line of SeqIO.write(record.....'fasta') in a for loop will input the the last record into new fasta file and it will only contain …
Comment: How to process Bulk WES data?
by
GenoMax
142k
You could use `sarek` (nf-core's exome pipeline) if you don't want to customize or reinvent : https://nf-co.re/sarek/3.4.2
Comment: Empty .best and .sing2 Files After Running Demuxlet
by
Ram
43k
Please use the formatting bar (especially the `code` option) to present your post better. You can use backticks for inline code (\`text\` b…
Answer: FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last plac
by
David Langenberger
11k
Two last seats have just become available. Apply now, if you want them.
Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr
by
GenoMax
142k
You always need to add the following option when you are using `-p` to count paired-end reads. --countReadPairs If specified, fragm…
Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
by
mropri
▴ 150
Hi swbarnes2, that was the problem, they were not numeric but as character columns. converted them and it fixed the error. Thank you for yo…
Answer: featureCounts output summary assigned value higher than uniquely mapped reads fr
by
Prawesh
• 0
I figured out: Since featureCounts counts fragments and not reads, we have pair-end data that means **Assigned** value from the output w…
Traffic: 1698 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6