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121,903 results • Page 619 of 2439
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947
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How do I predict HLA's haplotype from WES data?
HLA WES haplotype
4.2 years ago by kwanghoon ▴ 20
0
votes
3
replies
2.0k
views
fgsea gene names
fgsea
updated 4.2 years ago by 89k • written 4.2 years ago by ▴ 20
0
votes
1
reply
1.3k
views
CPC2.py can not work
CPC2
updated 4.2 years ago by ★ 1.7k • written 4.2 years ago by ▴ 30
4
votes
1
reply
1.5k
views
Does normalization in edgeR conflict with tximeta-generated offset matrix?
Normalization tximeta RNA-Seq edgeR
updated 4.2 years ago by 89k • written 4.2 years ago by ▴ 80
4
votes
11
replies
3.1k
views
How to find the fasta file with maxium number of amino acids?
protein fasta sequence
4.2 years ago by shahbaz.ahmed ▴ 40
0
votes
0
replies
543
views
can we subdivide a single .fa file having cds, cdna, protein and genomic sequence in to separate file having only one type of sequence?
bioconductor
updated 4.2 years ago by 45k • written 4.2 years ago by ▴ 40
3
votes
3
replies
1.2k
views
Ngs : how check if two samples come frome the same family?
exome family Genome
updated 4.2 years ago by 89k • written 4.2 years ago by ▴ 120
0
votes
2
replies
1.2k
views
program/ software to generate large synthetic benchmark gene/ protein interaction network
PPI interaction benchmark network R
4.2 years ago by cwwong13 ▴ 40
0
votes
0
replies
950
views
Job: Bioinformatics position at NIOO-KNAW (Wageningen, The Netherlands)
python snakemake Linux git Netherlands
4.2 years ago by m.dehollander ▴ 50
3
votes
1
reply
1.1k
views
identification of lncRNA
lncRNA mRNA RNA-seq
updated 4.2 years ago by ★ 2.6k • written 4.2 years ago by ▴ 30
6
votes
18
replies
6.8k
views
6 follow
How to generate a combined read count txt file with header as file name
bash linux awk R
updated 4.1 years ago by ▴ 10 • written 6.0 years ago by ▴ 470
2
votes
4
replies
2.2k
views
whole genome sequence for origami 2 (DE3) and rosetta 2 (DE3)
ecoli cells rosetta2 origami2 competent Novagen
updated 3.3 years ago by • 0 • written 4.2 years ago by ▴ 200
1
vote
2
replies
1.2k
views
Is geneontology.org down?
database geneontology
4.2 years ago by EagleEye 7.6k
3
votes
4
replies
1.6k
views
population stratification for candidate gene association study
stratification candidate population PCA gene
4.2 years ago by putty ▴ 40
9
votes
9
replies
5.1k
views
6 follow
Forum: Choose between AMD and INTEL Server CPU in 2021-2022
hardware server
updated 4.2 years ago by 27k • written 4.2 years ago by ▴ 140
0
votes
0
replies
1.2k
views
HiC matrix in .txt format to .h5
matrix HiC h5 txt
4.2 years ago by Oleczkaff • 0
2
votes
2
replies
1.2k
views
Genotype imputation - do SNP IDs of input files and reference panels matter?
genotype SNP reference VCF imputation
updated 4.2 years ago by 2.9k • written 4.2 years ago by ▴ 180
2
votes
1
reply
1.4k
views
Why am I getting microRNA genes from a 10X genomics dataset?
RNA-seq microRNA
4.2 years ago by Gene_MMP8 ▴ 240
1
vote
0
replies
1.2k
views
QIIME2 quality control
control dada2 quality qiime2
4.2 years ago by blur ▴ 280
0
votes
0
replies
1.7k
views
Job: Postdoc – Natural Language Processing / Text Mining
NLP PyTorch Text Mining Tensorflow
4.2 years ago by info ▴ 80
2
votes
4
replies
1.6k
views
How to create gene level data from a probe level data?
R sum mean gene microarray
4.2 years ago by mohammedtoufiq91 ▴ 270
3
votes
4
replies
1.6k
views
DENOVO ASSEMBLY
assembly NGS Assembly Denovo
updated 4.2 years ago by ★ 3.3k • written 4.2 years ago by ▴ 30
1
vote
4
replies
1.8k
views
SNP ID
SNP ID dbSNP_143
4.2 years ago by shamsurrahaman132 ▴ 10
1
vote
4
replies
6.7k
views
How to fix "ValueError: not enough values to unpack (expected 3, got 1)" when excuting batch analysis?
batch germline cnv
updated 4.2 years ago by • 0 • written 5.1 years ago by • 0
4
votes
4
replies
1.3k
views
What is the difference between Assignment and Prediction?
protein protein-structure protein-structure-prediction
updated 4.2 years ago by ★ 30k • written 4.2 years ago by ▴ 20
0
votes
5
replies
1.8k
views
CNVkit Feedback about panel or normales needed
CNVkit
4.2 years ago by mphoeppner • 0
2
votes
0
replies
687
views
panelcn.mops package to build up control.bam file
panelcn.mops samtools
4.2 years ago by jimmy0958073736 ▴ 40
1
vote
3
replies
1.2k
views
Blast results processing lines bigger than 60
blast unix commands awk result
4.2 years ago by hdtms ▴ 20
0
votes
14
replies
2.6k
views
error relate to R
TWAS SNP R
updated 4.2 years ago by 89k • written 4.2 years ago by ▴ 150
1
vote
0
replies
1.1k
views
DepthPerSampleHC and StrandBiasBySample HaplotypeCaller Warnings in GATK
Haplotypecaller
4.2 years ago by Jianing ▴ 10
2
votes
0
replies
633
views
scRNA-seq datasets for different cell lines
scRNAseq
4.2 years ago by Alexander ▴ 220
2
votes
9
replies
3.2k
views
Getting command line blastn results for the complementary strand
blast command-line blastn
updated 4.2 years ago by 15k • written 4.2 years ago by ▴ 70
2
votes
2
replies
1.2k
views
Differentially gene expression multispecies
Gene Expression Multiespecies RNAseq
4.1 years ago by tiagobellintani ▴ 40
3
votes
2
replies
1.3k
views
Differentially gene expression analysis using limma
Limma packages
updated 4.2 years ago by 3.3k • written 4.2 years ago by ▴ 20
2
votes
5
replies
2.6k
views
Weird characters in yeast reference gff3
SGD gff3 yeast gff
4.2 years ago by liorglic ★ 1.5k
7
votes
3
replies
1.8k
views
How to normalize and transform RNA-seq data of different samples for PCA?
TMM PCA RNA-seq edgeR
updated 4.2 years ago by 89k • written 4.2 years ago by ★ 1.1k
0
votes
2
replies
2.2k
views
Manhattan plot p-value
manhattan plot snp
4.2 years ago by shamsurrahaman132 ▴ 10
0
votes
0
replies
642
views
IGV add contig/chr to genome file within session
genome IGV bam alignment
4.2 years ago by noodle ▴ 650
0
votes
1
reply
1.1k
views
Which error bar to use to show gene expression from single-cell RNAseq data
expression rnaseq statistics gene single-cell
4.2 years ago by gundalav ▴ 380
0
votes
0
replies
1.7k
views
Generating comprehensive data for Promethease and Codegen.eu from WGS
WGS gVCF Promethease raw calling variant
4.2 years ago by Tim • 0
0
votes
0
replies
679
views
rsem-calculate-expression error
RNA-Seq rsem rsem-calculate-expression
4.2 years ago by Bhoomika • 0
3
votes
4
replies
1.4k
views
How to calculate the distribution of histone modifications on transcription factors
modifications histone
4.2 years ago by koyee_d ▴ 20
2
votes
2
replies
2.5k
views
How to convert genotypes "1, 2" to "0,1, 2"?
snp plink
updated 2.0 years ago by ▴ 10 • written 4.2 years ago by ▴ 50
0
votes
2
replies
910
views
Extracting coding region for multiple sequences.
Coding Region
4.2 years ago by QAZ ▴ 20
2
votes
8
replies
4.8k
views
Trying to run FIMO from Meme suite using command line
meme motif
updated 4.2 years ago by 11k • written 4.2 years ago by • 0
3
votes
3
replies
1.1k
views
How to identify and characterize novel genes?
Novel
updated 4.2 years ago by ▴ 590 • written 4.2 years ago by • 0
0
votes
0
replies
659
views
How was hierarchical clustering established for mRNA expression data?
clustering mRNA expression
4.2 years ago by ceruleanivy ▴ 50
0
votes
1
reply
1.1k
views
Help with processing GSE63060: Illumina data that does not have lumi requirements
lumi illumina Bioconductor R
updated 4.2 years ago by 89k • written 4.2 years ago by • 0
1
vote
1
reply
1.1k
views
Minimum coverage for structural variant calling
variant structural coverage
updated 4.2 years ago by ★ 2.2k • written 4.2 years ago by ▴ 370
11
votes
10
replies
12k
views
7 follow
How To Calculate Genetic Heterogeneity From Genotype Data - How Useful Is This Measure?
genetics snp genotyping
updated 3.5 years ago by 45k • written 14.6 years ago by 16k
121,903 results • Page 619 of 2439
Recent Votes
Answer: Tried building a compact sequence format with 4-bit storage
Tried building a compact sequence format with 4-bit storage
Shift in RNA 3' position, Term-Seq vs RNASeq
Comment: STARlong for pacbio Isoseq reads
Comment: Automatically annotating a feature using a genbank file
Answer: Is this PCA plot correct??
Answer: Is this PCA plot correct??
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Recent Replies
Comment: Is total miRNA in EV constant? Implications for library size normalization. by Gordon Smyth ★ 8.3k
RNA-seq is very good at relative analyes. It would be straightforward to determine which miRNAs are relatively more abundant, compared to o…
Comment: Tried building a compact sequence format with 4-bit storage by Pranava ▴ 10
Woah!!! Thank you very much, Matthias. I honestly didn't even know some of those existed and I will definitely go through them and try to u…
Answer: Tried building a compact sequence format with 4-bit storage by Matthias Zepper 5.1k
Hello Pranava, Thanks for sharing your repository. Devising a new file format is an interesting undertaking and certainly a task with many…
Answer: Gene Ontology Enrichment with LOC gene IDs in Common Carp (Cyprinus carpio) by GenoMax 153k
`LOC` gene ID's are often assigned to uncharacterized genes and you may not get useful information from databases for them, thus they will …
Comment: Whole Genome Sequencing IG regions by GenoMax 153k
> are the calls I am seeing reliable or should I take them with something of a pinch of salt? Not sure what calls you are referring to but…
Comment: RNA-SEQ where only a subset of genes is of interest by piffelpaff • 0
Sorry to revive this ancient thread but I'm currently discussing the same question with some people in my lab and would love to somebody po…
Answer: STARlong for pacbio Isoseq reads by YuZJ • 0
Hello, you may try deSALT (DOI: 10.1186/s13059-019-1895-9, GitHub: ydLiu-HIT/deSALT) or uLTRA (DOI: 10.1093/bioinformatics/btab540, GitHub:…
Comment: Shift in RNA 3' position, Term-Seq vs RNASeq by acvill ▴ 350
Without knowing the details of the Term-seq method, could the 38 nt shift be accounted for by the difference in the position of the ribosom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
Thanks, I'll give it a try.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
You could give `mapPacBio.sh` from BBMap suite a try while you wait for other answers. That works for reads up to 6 kb. BBMap has a new hom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
The average is 1.8kb. I was planning to post it on GitHub, but it seems like the repository has been unattended for the last months, so I d…
Comment: Getting just fastqc.zip file? by GenoMax 153k
Yes, You can either use it on command line or use the graphical user interface.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
What is the average length of your reads? That error sounds like a bug, so you may want to post that on `STAR` repo as an issue. I assume …
Comment: Getting just fastqc.zip file? by pourhangleila95 • 0
I want to perform fastQC on my data.Do you use fastQC software for doing it?
Comment: Whole Genome Sequencing IG regions by 719 • 0
Sorry for the poor wording of the original post, also should say I really appreciate people taking a moment to look at my post. My main con…
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