Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
122,200 results • Page
620 of 2444
Sort: Rank
Rank
Views
Votes
Replies
1
vote
4
replies
3.5k
views
Batch correction proteomics dataset
proteomics
correction
missing
Batch
values
4.4 years ago by
Santosh
▴ 10
0
votes
7
replies
2.4k
views
Bowtie2 genome indexes incomplete
index
bowtie2
updated 4.4 years ago by
GenoMax
154k • written 4.4 years ago by
Elisa
• 0
0
votes
2
replies
1.3k
views
Estimating gene expression from eQTL composition
eQTL
gene
expression
updated 4.4 years ago by
Carambakaracho
★ 3.3k • written 4.4 years ago by
lefthandgergo
▴ 10
1
vote
2
replies
1.1k
views
Combining two vcf files
Vcf
GWAS
4.4 years ago by
raalsuwaidi
▴ 110
0
votes
0
replies
778
views
Conversion of Metacyc Ids to BiGG ids in metabolic model
metabolic
BiGG
MetaCyc
model
Database
RAVEN
4.4 years ago by
Aini
• 0
2
votes
1
reply
1.1k
views
What is the logical operator for plink2 --extract-if-info?
plink2
updated 4.4 years ago by
chrchang523
11k • written 4.4 years ago by
YL
▴ 10
2
votes
4
replies
1.5k
views
What does "multiplex" mean?
definition
4.4 years ago by
ccc
▴ 30
0
votes
0
replies
941
views
High values of Chao1 index
INDEX
MOTHOUR
DIVERSITY
CHAO1
ALPHA
4.4 years ago by
marc.acfz
• 0
2
votes
2
replies
1.4k
views
Provide interactive result of sleuth_live online?
RNA-SEQ
gene
expression
sleuth
4.4 years ago by
seb.boegel
• 0
0
votes
0
replies
673
views
Estimating the effective population size
ne
SNeP
VCF
4.4 years ago by
PKW
▴ 110
0
votes
4
replies
2.1k
views
STAR errors out during alignment
RNA-seq
STAR
alloc
4.4 years ago by
Ram
45k
1
vote
1
reply
904
views
3' DGE (3'-digital gene expression) for knockdown analysis
3-prime-DGE
knockdown
updated 3.0 years ago by
Ram
45k • written 4.4 years ago by
upendrakumar.devisetty
▴ 400
2
votes
6
replies
2.9k
views
How install DESeq2, gplots, RColorBrewer in R?
analysis
RNA-Seq
updated 4.4 years ago by
Ram
45k • written 4.4 years ago by
Bioinformatics1
▴ 10
0
votes
0
replies
718
views
How to make a genomic content table that has species as the rows and functions (pathways or genes) on the column?
metagenomics
4.4 years ago by
dpc
▴ 250
0
votes
3
replies
1.3k
views
what is the best R package/function to perform an Equality of variance F-test on TMM log2 gene expression values
gene-expression
F-test
equality-of-variance
updated 4.4 years ago by
ATpoint
90k • written 4.4 years ago by
RNAseqer
▴ 300
0
votes
6
replies
3.1k
views
Problem for retrieving gene symbol from ID_REF
GEO
dataset
updated 4.4 years ago by
GenoMax
154k • written 4.4 years ago by
fahim
▴ 20
0
votes
0
replies
808
views
BLASTP - parameters for soft filtering and smith-waterman alignment
seg
soft-filtering
blastp
updated 4.4 years ago by
Ram
45k • written 4.4 years ago by
timothy.kirkwood
▴ 140
0
votes
0
replies
1.2k
views
can you use LD scores from build 37 reference to get LD score intercept on build 38 summary stats?
ld
regression
score
4.4 years ago by
curious
▴ 900
0
votes
1
reply
1.2k
views
HiSat2 and StringTie! -StringTie empty GTF file
transcript
assembly
hisat2
stringtie
DNA
updated 4.4 years ago by
cpad0112
21k • written 4.4 years ago by
Sabrina
• 0
1
vote
12
replies
2.7k
views
Volcano plot interpretation
EnhancedVolcano
volcano-plot
updated 2.8 years ago by
Ram
45k • written 4.4 years ago by
fahim
▴ 20
1
vote
2
replies
1.6k
views
Can nhmmer predict short dna (~20 bp) motifs from HMM profiles?
HMMER
nhmmer
updated 4.4 years ago by
Mensur Dlakic
★ 30k • written 4.4 years ago by
Taylor
• 0
1
vote
1
reply
1.7k
views
GenomicsDBImport from Mutect2 output
Mutect2
GenomicsDBImport
somatic
VCF
GATK
updated 2.4 years ago by
sure
▴ 110 • written 4.4 years ago by
cocchi.e89
▴ 300
0
votes
0
replies
760
views
plotHeatMap row ordering in subplots
deeptools
updated 4.4 years ago by
Ram
45k • written 4.4 years ago by
agd27
▴ 130
0
votes
7
replies
2.2k
views
Create matrix from ReadsPerGene.out.tab files
star
updated 4.4 years ago by
Ram
45k • written 4.4 years ago by
Yihan
• 0
0
votes
4
replies
1.7k
views
Obtaining gene specific annotations for mouse genes
mouse
enrichment
set
iDEA
gene
4.4 years ago by
Stevens
▴ 30
2
votes
4
replies
1.7k
views
RNA-Seq lib type
Stranded
RNA-Seq
non-Stranded
updated 4.4 years ago by
Istvan Albert
103k • written 4.4 years ago by
ziziqolo
▴ 10
2
votes
3
replies
3.2k
views
bcl-convert multithreading optimisation
bcl-convert
bcl2fastq
threading
2.7 years ago by
Juke34
9.3k
3
votes
4
replies
2.8k
views
Flye assembly, increased coverage results in decreased N50
Minion
genome
assembly
flye
sequencing
4.4 years ago by
roger.huerlimann
▴ 10
1
vote
4
replies
1.9k
views
Splitting Big Fastq directory into smaller parts
Gzip
Nanopore
RNA-Seq
Fastq
4.4 years ago by
santos48
▴ 40
1
vote
2
replies
1.2k
views
Pulling specific variables
deseq2
4.4 years ago by
Nona
▴ 90
4
votes
2
replies
1.7k
views
Count number of occurrences an annotation in a multisample vcf split into multiple chunks
bcftools
vcf
annotation
4.4 years ago by
tacrolimus
▴ 150
0
votes
0
replies
1.8k
views
Job:
PhD student in Computer Science and Bioinformatics (R1)
algorythms
biology
Computational
analyse
data
4.4 years ago by
recruitment
▴ 20
4
votes
6
replies
5.4k
views
GEO Matrix File Help
GEO
single-cell
counts
matrix
RNA
seq
updated 4.4 years ago by
GenoMax
154k • written 4.4 years ago by
Melvin
▴ 10
0
votes
0
replies
987
views
Job:
(another) Fully-funded PhD scholarship on functional and evolutionary genomics [Apply by 8/15]
evolution
genomics
statistical
transcriptome
updated 2.7 years ago by
Ram
45k • written 4.4 years ago by
Mari
▴ 30
0
votes
0
replies
886
views
Combining data sets for PCA
Plink
1000genome
PCA
genotype
4.4 years ago by
raalsuwaidi
▴ 110
0
votes
0
replies
691
views
KEGG multiple mapped
KEGG
multiple
mapped
4.4 years ago by
MEITUO
▴ 10
5
votes
3
replies
1.5k
views
are there GO families?
terms
GO
updated 4.4 years ago by
Martombo
★ 3.2k • written 4.4 years ago by
fyfes
▴ 70
0
votes
0
replies
906
views
DEXSeq results visualisation
usage
DEXseq
RNA-seq
exon
4.4 years ago by
MattiaF
• 0
2
votes
4
replies
2.0k
views
How to identify variants in the last or penultimate exons?
mapping
variants
exon
updated 4.4 years ago by
Emily
24k • written 4.4 years ago by
lincaijin1994
▴ 50
0
votes
2
replies
1.2k
views
Volcano plot
EnhancedVolcano
updated 2.8 years ago by
Ram
45k • written 4.4 years ago by
fahim
▴ 20
0
votes
0
replies
1.1k
views
Job:
Research software engineer supporting open-source bioinformatics software and services (0.6fte)
part-time
netherlands
research-software-engineer
4.4 years ago by
Egon Willighagen
5.4k
0
votes
0
replies
752
views
CRISPR cut site annotation of gene feature and consequence
off-target
crispr
annotation
gff
knockout
4.4 years ago by
James Sacco
▴ 10
0
votes
0
replies
651
views
What is the best workflow to analyse RT-qPCR ('Real-Time quantitative PCR') data using R packages?
RT-qPCR
R
4.4 years ago by
pavelasquezv
▴ 50
0
votes
1
reply
1.3k
views
How to filter allele frequency of each sample with different Zygosity status (exclude likely non-germline variants)
germline
vcf
filter
zygosity
4.4 years ago by
YL
▴ 10
1
vote
0
replies
899
views
Manually add invariant sites from a FASTA to VCF?
vcf
variant
invariant
maf
snp
4.4 years ago by
tal.shalev
▴ 10
0
votes
1
reply
915
views
vcf file alternate allele
SNP
updated 4.4 years ago by
Ram
45k • written 4.4 years ago by
evafinegan
• 0
1
vote
1
reply
1.9k
views
IGV use --name command line option in a batch file
igv
4.4 years ago by
Ram
45k
8
votes
18
replies
7.0k
views
9 follow
Searching a venn diagram online tool
venn-diagram
updated 2.8 years ago by
Ram
45k • written 4.4 years ago by
fahim
▴ 20
4
votes
4
replies
4.6k
views
Missing gene symbol
gene-symbol
updated 2.8 years ago by
Ram
45k • written 4.4 years ago by
fahim
▴ 20
1
vote
8
replies
2.0k
views
Only Log.out and Log.progress.out files after alignment.
star
updated 4.4 years ago by
Ram
45k • written 4.4 years ago by
Yihan
• 0
122,200 results • Page
620 of 2444
Recent Votes
Answer: Log2 transformation is well used, but is there a good paper that can be used as
Answer: Flatten a GTF
Answer: RNA-seq - Creating SAF from NCBI gff for Subread featureCounts - keep 'gene' or
Can EdgeR of DeSeq be used for Single-cell RNA-seq?
Answer: Getting the overlap between two GTF files
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
Converting GFF to GTF
Recent Locations •
All
United States,
3 minutes ago
Norway,
3 minutes ago
France,
3 minutes ago
Austria,
6 minutes ago
United Kingdom,
9 minutes ago
United Kingdom,
12 minutes ago
Việt Nam,
13 minutes ago
Recent Awards •
All
Popular Question
to
Lila M
★ 1.3k
Teacher
to
dthorbur
★ 3.2k
Popular Question
to
colindaven
8.1k
Teacher
to
ATpoint
90k
Popular Question
to
san96
▴ 190
Popular Question
to
RD
▴ 30
Popular Question
to
Wilber0x
▴ 70
Recent Replies
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
by
thomas.heigl.ibk
▴ 10
thanks for the quick reply. i posted the screenshot. gatk-internally, there is still the difference using -ERC or not, priot is getting …
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
by
thomas.heigl.ibk
▴ 10
here the igv view. showing the histogram for all samples plus the reads for one: ![enter image description here][1] and expanded view of …
Comment: low quality data or file name swapping -- cellranger arc errors when processing
by
Arup Ghosh
3.5k
Check the read lengths to make sure the files are correct.
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
by
Pierre Lindenbaum
166k
> Any suggestions or help you could share please, show us an IGV screenshot of the position GATK realign the reads locally, discards read…
Comment: Can i use orthofinder for small protein datasets and not full proteome?
by
alexandrakortsi
• 0
By sequence. Thank you for your response!
Comment: Why did the QV value decrease significantly after using YAHS for HiC scaffolding
by
xinguok794
▴ 10
Thank you for your reply! Unfortunately, despite running YAHS with `--no-contig-ec`, the QV value of the resulting FASTA file did not impro…
Comment: Subsetting before QC in Spatial Transcriptomics
by
Kent
▴ 30
Hi Kevin, Thanks for the detailed explanation. Due to the characteristics of the datasets, we initially used very lenient quality control…
Comment: Midpoint rooting IQTREE newick file moves node support around
by
Luca Arbore
▴ 10
Thank you very much Kevin, it worked!
Comment: ID unifiying across different datasets
by
GenoMax
154k
In this case the entry notes that this is likely the product of a pseudogene: https://www.uniprot.org/uniprotkb/Q5VTE0/entry and existence …
Comment: Comparison of different RNAseq data sets
by
DrSmad
▴ 10
Each lab contributes both control and LPS. Example, for cell line A_lab1 did and analysis on control and LPS-6h. Cell line B_lab2 did contr…
Comment: ID unifiying across different datasets
by
zizigolu
★ 4.4k
sorry, why some gene names are often lacking though the Uniprot ID is still valid (using biomart)?
Comment: snpEff: Unsupported structural variant types
by
shpak.max
▴ 70
Unfortunately, while it ran without a problem initially, when I checked the run screen today, I saw the following error message (and unlike…
Comment: ID unifiying across different datasets
by
GenoMax
154k
You can use the [**ID mapping tool**][1] from UniProt site (third ID did not map from the list above): From To P68104 ENSG0000015…
Answer: The geo samples is not having sentrix id and sentrix position. But this informat
by
yura.grabovska
▴ 890
Crosspost from related question: https://www.biostars.org/p/9616466/#9616534 ``` ##Using R, illuminaio from Bioconductor library(…
Answer: Finding Sentrix ID in HM450K arrays
by
yura.grabovska
▴ 890
``` ##Using R, illuminaio from Bioconductor library(illuminaio) temp.idat <- readIDAT(file = "200379120087_R02C02_Grn.idat") tem…
Traffic: 3622 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6