Limit : all time
all time today this week this month this year
121,995 results • Page 621 of 2440
Sort: Rank
Rank Views Votes Replies
4
votes
11
replies
3.2k
views
How to find the fasta file with maxium number of amino acids?
protein fasta sequence
4.3 years ago by shahbaz.ahmed ▴ 40
0
votes
0
replies
556
views
can we subdivide a single .fa file having cds, cdna, protein and genomic sequence in to separate file having only one type of sequence?
bioconductor
updated 4.2 years ago by 45k • written 4.3 years ago by ▴ 40
3
votes
3
replies
1.2k
views
Ngs : how check if two samples come frome the same family?
exome family Genome
updated 4.3 years ago by 89k • written 4.3 years ago by ▴ 120
0
votes
2
replies
1.3k
views
program/ software to generate large synthetic benchmark gene/ protein interaction network
PPI interaction benchmark network R
4.3 years ago by cwwong13 ▴ 40
0
votes
0
replies
966
views
Job: Bioinformatics position at NIOO-KNAW (Wageningen, The Netherlands)
python snakemake Linux git Netherlands
4.3 years ago by m.dehollander ▴ 50
3
votes
1
reply
1.1k
views
identification of lncRNA
lncRNA mRNA RNA-seq
updated 4.3 years ago by ★ 2.6k • written 4.3 years ago by ▴ 30
6
votes
18
replies
6.9k
views
6 follow
How to generate a combined read count txt file with header as file name
bash linux awk R
updated 4.1 years ago by ▴ 10 • written 6.1 years ago by ▴ 480
2
votes
4
replies
2.3k
views
whole genome sequence for origami 2 (DE3) and rosetta 2 (DE3)
ecoli cells rosetta2 origami2 competent Novagen
updated 3.4 years ago by • 0 • written 4.3 years ago by ▴ 200
1
vote
2
replies
1.3k
views
Is geneontology.org down?
database geneontology
4.3 years ago by EagleEye 7.6k
3
votes
4
replies
1.6k
views
population stratification for candidate gene association study
stratification candidate population PCA gene
4.2 years ago by putty ▴ 40
9
votes
9
replies
5.2k
views
6 follow
Forum: Choose between AMD and INTEL Server CPU in 2021-2022
hardware server
updated 4.3 years ago by 27k • written 4.3 years ago by ▴ 140
0
votes
0
replies
1.2k
views
HiC matrix in .txt format to .h5
matrix HiC h5 txt
4.3 years ago by Oleczkaff • 0
2
votes
2
replies
1.2k
views
Genotype imputation - do SNP IDs of input files and reference panels matter?
genotype SNP reference VCF imputation
updated 4.3 years ago by 2.9k • written 4.3 years ago by ▴ 180
2
votes
1
reply
1.4k
views
Why am I getting microRNA genes from a 10X genomics dataset?
RNA-seq microRNA
4.3 years ago by Gene_MMP8 ▴ 240
1
vote
0
replies
1.3k
views
QIIME2 quality control
control dada2 quality qiime2
4.3 years ago by blur ▴ 280
0
votes
0
replies
1.7k
views
Job: Postdoc – Natural Language Processing / Text Mining
NLP PyTorch Text Mining Tensorflow
4.3 years ago by info ▴ 80
2
votes
4
replies
1.6k
views
How to create gene level data from a probe level data?
R sum mean gene microarray
4.3 years ago by mohammedtoufiq91 ▴ 270
3
votes
4
replies
1.7k
views
DENOVO ASSEMBLY
assembly NGS Assembly Denovo
updated 4.3 years ago by ★ 3.3k • written 4.3 years ago by ▴ 30
1
vote
4
replies
1.8k
views
SNP ID
SNP ID dbSNP_143
4.3 years ago by shamsurrahaman132 ▴ 10
1
vote
4
replies
6.8k
views
How to fix "ValueError: not enough values to unpack (expected 3, got 1)" when excuting batch analysis?
batch germline cnv
updated 4.3 years ago by • 0 • written 5.1 years ago by • 0
4
votes
4
replies
1.4k
views
What is the difference between Assignment and Prediction?
protein protein-structure protein-structure-prediction
updated 4.3 years ago by ★ 30k • written 4.3 years ago by ▴ 20
0
votes
5
replies
1.8k
views
CNVkit Feedback about panel or normales needed
CNVkit
4.3 years ago by mphoeppner • 0
2
votes
0
replies
702
views
panelcn.mops package to build up control.bam file
panelcn.mops samtools
4.3 years ago by jimmy0958073736 ▴ 40
1
vote
3
replies
1.3k
views
Blast results processing lines bigger than 60
blast unix commands awk result
4.3 years ago by hdtms ▴ 20
0
votes
14
replies
2.7k
views
error relate to R
TWAS SNP R
updated 4.3 years ago by 89k • written 4.3 years ago by ▴ 150
1
vote
0
replies
1.1k
views
DepthPerSampleHC and StrandBiasBySample HaplotypeCaller Warnings in GATK
Haplotypecaller
4.3 years ago by Jianing ▴ 10
2
votes
0
replies
645
views
scRNA-seq datasets for different cell lines
scRNAseq
4.3 years ago by Alexander ▴ 220
2
votes
9
replies
3.2k
views
Getting command line blastn results for the complementary strand
blast command-line blastn
updated 4.3 years ago by 16k • written 4.3 years ago by ▴ 70
2
votes
2
replies
1.2k
views
Differentially gene expression multispecies
Gene Expression Multiespecies RNAseq
4.2 years ago by tiagobellintani ▴ 40
3
votes
2
replies
1.4k
views
Differentially gene expression analysis using limma
Limma packages
updated 4.3 years ago by 3.3k • written 4.3 years ago by ▴ 20
2
votes
5
replies
2.6k
views
Weird characters in yeast reference gff3
SGD gff3 yeast gff
4.3 years ago by liorglic ★ 1.5k
7
votes
3
replies
1.9k
views
How to normalize and transform RNA-seq data of different samples for PCA?
TMM PCA RNA-seq edgeR
updated 4.3 years ago by 89k • written 4.3 years ago by ★ 1.1k
0
votes
2
replies
2.2k
views
Manhattan plot p-value
manhattan plot snp
4.3 years ago by shamsurrahaman132 ▴ 10
0
votes
0
replies
652
views
IGV add contig/chr to genome file within session
genome IGV bam alignment
4.3 years ago by noodle ▴ 650
0
votes
1
reply
1.1k
views
Which error bar to use to show gene expression from single-cell RNAseq data
expression rnaseq statistics gene single-cell
4.3 years ago by gundalav ▴ 380
0
votes
0
replies
1.7k
views
Generating comprehensive data for Promethease and Codegen.eu from WGS
WGS gVCF Promethease raw calling variant
4.3 years ago by Tim • 0
0
votes
0
replies
688
views
rsem-calculate-expression error
RNA-Seq rsem rsem-calculate-expression
4.3 years ago by Bhoomika • 0
3
votes
4
replies
1.5k
views
How to calculate the distribution of histone modifications on transcription factors
modifications histone
4.3 years ago by koyee_d ▴ 20
2
votes
2
replies
2.6k
views
How to convert genotypes "1, 2" to "0,1, 2"?
snp plink
updated 2.1 years ago by ▴ 10 • written 4.3 years ago by ▴ 50
0
votes
2
replies
944
views
Extracting coding region for multiple sequences.
Coding Region
4.3 years ago by QAZ ▴ 20
2
votes
8
replies
5.0k
views
Trying to run FIMO from Meme suite using command line
meme motif
updated 4.3 years ago by 11k • written 4.3 years ago by • 0
3
votes
3
replies
1.1k
views
How to identify and characterize novel genes?
Novel
updated 4.3 years ago by ▴ 590 • written 4.3 years ago by • 0
0
votes
0
replies
671
views
How was hierarchical clustering established for mRNA expression data?
clustering mRNA expression
4.3 years ago by ceruleanivy ▴ 50
0
votes
1
reply
1.1k
views
Help with processing GSE63060: Illumina data that does not have lumi requirements
lumi illumina Bioconductor R
updated 4.3 years ago by 89k • written 4.3 years ago by • 0
1
vote
1
reply
1.1k
views
Minimum coverage for structural variant calling
variant structural coverage
updated 4.3 years ago by ★ 2.2k • written 4.3 years ago by ▴ 370
11
votes
10
replies
12k
views
7 follow
How To Calculate Genetic Heterogeneity From Genotype Data - How Useful Is This Measure?
genetics snp genotyping
updated 3.6 years ago by 45k • written 14.7 years ago by 16k
1
vote
3
replies
4.1k
views
Adding a chain ID (A or B etc) to my pdb file
pdb
updated 4.3 years ago by • 0 • written 4.7 years ago by • 0
0
votes
3
replies
3.9k
views
Problems running gatk - gatk: command not found
vcf bam gatk
updated 4.3 years ago by ★ 1.2k • written 4.3 years ago by ▴ 210
1
vote
0
replies
794
views
Job: Computational research positions, incl. postdoctoral scholars (recommender systems in genomics)
recommender Seattle visualization genomics
4.3 years ago by meuleman ▴ 10
0
votes
1
reply
1.3k
views
Exporting Genes/Molecules of interest from IPA Canonical Pathway
core export data analysis ipa
updated 4.3 years ago by • 0 • written 4.3 years ago by • 0
121,995 results • Page 621 of 2440
Recent Votes
Answer: SNP calling ONT sequenced files
Answer: SNP calling ONT sequenced files
Answer: Combine a directory of GVCF files with gatk CombineGVCFs
Answer: Combine a directory of GVCF files with gatk CombineGVCFs
A: Trimmomatic Error: Unable to detect quality encoding
A: Trimmomatic Error: Unable to detect quality encoding
Answer: Nextflow MultiQC runs multiple times due to FASTQC zip name collisions
Recent Locations • All
Switzerland, 9 minutes ago
China,Xi'an, 10 minutes ago
Pakistan, 20 minutes ago
Ghent & Brussels, Belgium, 22 minutes ago
Türkiye, 23 minutes ago
India, 36 minutes ago
Austria/Vienna, 48 minutes ago
Recent Awards • All
Teacher to Mensur Dlakic ★ 30k
Popular Question to kalavattam ▴ 380
Scholar to Phil Ewels ★ 1.5k
Popular Question to blur ▴ 280
Teacher to Rob 7.2k
Popular Question to 1769mkc ★ 1.3k
Scholar to GenoMax 154k
Recent Replies
Answer: Transverse data by basu • 0
Sounds like you’ve got a data party going on—too many duplicates crashing it! If you need a quick fix for those pesky repeats, maybe check …
Answer: Pseudogene - scarce info by Mensur Dlakic ★ 30k
> The gene plays a pivotal role in some pathways of the immune response, but tbh I could'nt find any mention of my pseudogene on the linked…
Answer: SNP calling ONT sequenced files by cfos4698 ★ 1.2k
My personal preference is using [clair3][1]. I'm unsure if CLC didn't work because your compute resources are too limited, or if there are …
Comment: HIV NL4-3 transcriptome fasta by Ales ▴ 50
Hi, Wanted to update here that full transcriptome annotations for thousands of hiv genomes (including NL4-3) are now available at https://…
Answer: HIV NL4-3 transcriptome fasta by Ales ▴ 50
You can get full transcriptome annotation for the NL4-3 genomes: https://ccb.jhu.edu/HIV_Atlas/11676/AF324493.2 . Note the accession ID tho…
Answer: Doubt on docking by Mensur Dlakic ★ 30k
I think you are wrongly assuming that we can help you with this without knowing what is the protein of interest. A general answer is that …
Answer: Difficulty running FoldX in linux by Mensur Dlakic ★ 30k
The post looks much better now, so you did something. The preview here works fine. It simply can't be that the preview for your original po…
Comment: GUI commercial software for 10x single cell gene expression analysis by GenoMax 154k
Black box software has its cons but in instances like what OP needs that may be the only viable option. Their use limits reproducibility as…
Comment: downloading raw bam files from pacbio sequencer by GenoMax 154k
Have you checked : https://www.pacb.com/connect/datasets/
Comment: TMM-Normalization by kalavattam ▴ 380
No, but a modified version of TMM does: “GeTMM.” See the paper [here](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-0…
Comment: Difficulty running FoldX in linux by strayeroliver • 0
Responding to your answer. - I spent a lot of time formatting it just right, using the ``` methodology you mentioned. It looks very good o…
Comment: Nextflow MultiQC runs multiple times due to FASTQC zip name collisions by Phil Ewels ★ 1.5k
Found the docs: https://www.nextflow.io/docs/latest/process.html#multiple-input-files | Arity | Name pattern | Staged file names | |---|--…
Comment: Dorado in PowerShell on Windows by jared.andrews07 ★ 19k
No more than running it on native Linux (as that's what WSL is at this point).
Answer: SNP calling ONT sequenced files by colindaven 8.0k
The quality of (modern, SUP basecalled, but certainly not fast basecalled) ONT sequences should be fine, especially for bacterial SNP call…
Comment: SNP calling ONT sequenced files by GenoMax 154k
What is the median length of raw reads and how many do you have? Has the data been basecalled with "high" or "super" accuracy? > I have …
Traffic: 4755 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6