Let me to introduce two new metagenomics analysis tools:
AmphoraNet is the webserver implementation of the AMPHORA2 software which is a taxonomic composition analysis tool for metagenomic shotgun sequencing data. Using phylogenetic marker genes AmphoraNet is suitable for estimating the taxonomic composition of bacterial and archaeal communities faster and easier than other tools. Published in Gene.
AmphoraVizu is an online tool for visualizing outputs generated by the metagenomic analysis tool AMPHORA2 or its webserver implementation AmphoraNet. Published in Microbial Ecology
I welcome any comment, question and suggestion!
Here is a printscreen of an output of AmphoraVizu run on a Chinese Type 2 Diabetes metagenome:
Does it show taxonomy only down to class or any lower levels?
It can show any level.
AmphoraNet calculates any taxonomy levels and then using AmphoraVizu you can choose among Species, Genus, Family, Order, Phylum, Superkingdom levels (simple switch Lowest taxonomic rank on the AmphoraVizu page).
I changed the sample pictures.
Will try it! Thank you!