Question: (Closed) What is the most appropriate variant caller for tuberculosis WGS .bams?
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gravatar for vassialk
4.2 years ago by
vassialk190
Belarus
vassialk190 wrote:

What is the most appropriate variant caller for tuberculosis WGS .bams? We have .bams produced with NextGene, Ugene and BBmap and Mauve software. What variant caller to choose? We have Mpilep, VCF, SAM tools, is there any better solution for that step? What are the newest software for tuberculosis WGS data procesing? Thx.

ADD COMMENTlink written 4.2 years ago by vassialk190

It would be helpful if you included the name of the platform which generated your reads.

ADD REPLYlink modified 10 weeks ago by RamRS25k • written 4.2 years ago by mkulecka310

Hello vassialk!

We believe that this post does not fit the main topic of this site.

Not a real question.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink written 24 months ago by Michael Dondrup47k
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