Perhaps this is somewhat off topic for the site (?), but I am currently writing up my PhD thesis which is part wet-lab and part bioinformatics. For the bioinformatics part, I have a section on "these are the tools I used and this is the analysis I got out", and a section on "I wrote tool X and it does Y".
But now i'm half-way through, I am not sure if my style is what a traditional bioinformatics PhD thesis should look like - particularly for the code I wrote. For example, am I supposed to talk about the algorithms used in detail, or is dumping the code in the supplementary section good enough - or does the code go in the results section? or maybe the methods?
Unfortunately for me, no one in my lab has written a Bioinformatics thesis in English. Therefore, I am asking very kindly if anyone would be happy sharing a link to their thesis here, which I can read over just to make sure i'm formatting things right :]
Thank you very much!