Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Post does not exist.
Limit : all time
all time
today
this week
this month
this year
116,992 results • Page
1 of 2340
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
9
views
constructing pangenome through psvcp
psvcp
pangenome
14 minutes ago by
analyst
▴ 50
0
votes
0
replies
8
views
zero TPM for many gene including housekeeping when using kallisto
RNAseq
9 minutes ago by
ashkan
▴ 160
0
votes
0
replies
12
views
What marks a De-Novo Genome assembly as FAILED?
nanopore
denovo
illumina
assembly
genome
34 minutes ago by
Umer
▴ 50
0
votes
1
reply
73
views
How to handle duplicated genes in TCGA data?
TCGA
GDC
mRNA
updated 1 hour ago by
txema.heredia
▴ 130 • written 10 hours ago by
Ngrin
• 0
3
votes
7
replies
289
views
Faster Needleman-Wunsch rapid global alignment of two sequences?
Needleman-Wunsch
alignment
updated 2 hours ago by
DGTool
▴ 20 • written 20 hours ago by
Gabriel R.
★ 2.9k
0
votes
2
replies
97
views
How to generate table_annovar from VCF input?
vcf
annovar
updated 2 hours ago by
Pierre Lindenbaum
161k • written 8 hours ago by
melissachua90
▴ 70
0
votes
0
replies
36
views
How do I quantify the non-coding transcripts that I have generated after using CPAT,PLEK, and BLAST altogether?
transcript
Quantify
non-coding
3 hours ago by
Varsha
• 0
797
votes
167
replies
143k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 3 months ago by
Biostar
2.8k • written 7.4 years ago by
Istvan Albert
100k
0
votes
1
reply
84
views
Tutorial:
solution-Transcriptome.cpp:18:Transcriptome: exiting because of *INPUT FILE* error: could not open input file /geneInfo.tab #2142
STAR
written 7 hours ago by
huxiangyulove
• 0
0
votes
0
replies
61
views
Help interpreting KEGG module definitions for converting to NetworkX graph
definition
kegg
module
database
genomics
10 hours ago by
O.rka
▴ 720
4
votes
5
replies
4.3k
views
Tool:
GRIDSS: the Genomic Rearrangement IDentification Software Suite
Assembly
Structural-Variation
Variant-Calling
updated 10 hours ago by
dario.garvan
▴ 520 • written 7.2 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
62
views
Help! Reconstruction of locus, order contigs
contigs
cluster
alignment
locus
10 hours ago by
BATMAN
• 0
0
votes
4
replies
200
views
Merge clusters in Seurat UMAP
seurat
umap
1 hour ago by
kilcdincer
▴ 10
0
votes
0
replies
65
views
Use of ichor CNA
Dog
CNA
genome
15 hours ago by
sainavyav22
• 0
2
votes
2
replies
170
views
Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
single-cell
ambient-RNA
updated 14 hours ago by
Ram
43k • written 16 hours ago by
txema.heredia
▴ 130
0
votes
0
replies
79
views
News:
Course on Manual Genome Curation
Genome-Assembly
Pretext-View
Manual-Genome-Curation
updated 11 hours ago by
Ram
43k • written 17 hours ago by
carlopecoraro2
★ 2.5k
3
votes
2
replies
177
views
Details on salmon index
Salmon
updated 18 hours ago by
Rob
6.6k • written 1 day ago by
Lorenzo
• 0
0
votes
0
replies
71
views
Error when running create-maf-vcf at convertGVCFToHVCFForChrom step - PHGv2
PHG
pangenome
PHG_v2
18 hours ago by
Jsarria.EEAD
• 0
0
votes
1
reply
117
views
How can I calculate the OS of each patient?
overall-survival
updated 18 hours ago by
ATpoint
82k • written 19 hours ago by
Pedro
• 0
0
votes
1
reply
123
views
mitochondrial genome assembly pipeline
mammals
mitochondrial-genome
updated 19 hours ago by
Ram
43k • written 21 hours ago by
m90
▴ 30
0
votes
0
replies
72
views
cat-bgen fail
bgenix
updated 19 hours ago by
Ram
43k • written 19 hours ago by
lambard
• 0
3
votes
4
replies
248
views
Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer version?
RNA-seq
genome
updated 19 hours ago by
Ram
43k • written 1 day ago by
Ali
• 0
3
votes
3
replies
166
views
getting exon coordinates
genomics
updated 19 hours ago by
Ram
43k • written 20 hours ago by
Xbox_27
• 0
0
votes
4
replies
238
views
How to extract cells of different species after mapping with combined genome?
snRNA-seq
scRNA-seq
updated 4 hours ago by
Tony
• 0 • written 1 day ago by
vk
▴ 10
1
vote
5
replies
224
views
Can I perform a correlation test with 3 biological replicates per condition?
RNA-Seq
deseq2
updated 11 hours ago by
Ram
43k • written 1 day ago by
manuelmourato25
• 0
3
votes
4
replies
333
views
finding evidence(s) of a peptide translated from an "Upstream Open Reading Frame (uORF)"
UTR
masspec
uORF
peptide
updated 20 hours ago by
GenoMax
142k • written 1 day ago by
Pierre Lindenbaum
161k
2
votes
11
replies
594
views
DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts in whole blood: is it normal to always get NS?
rstudio
DEG
limma
2 hours ago by
egascon
• 0
1
vote
1
reply
121
views
API kegg - IndexError: list index out of range
kegg
API
updated 6 hours ago by
Nyksubuz
▴ 20 • written 1 day ago by
mirwa.zidi93
• 0
0
votes
0
replies
78
views
Blog:
The Current State and Future Prospects of Long-Read Sequencing
LRS
1 day ago by
Novogene
▴ 420
0
votes
0
replies
82
views
qPCR gene expression data analysis
qPCR
geneexpression
anova
1 day ago by
ebertomeup
• 0
0
votes
3
replies
190
views
Sam file Header problem
Sam
Header
problem
file
updated 2 hours ago by
Pierre Lindenbaum
161k • written 1 day ago by
saifulislam99121
• 0
1
vote
4
replies
211
views
Tool:
Converting Degree Minutes (DM) to Decimal Degrees (DD) using python script
Minutes
Decimal
offtopic
Degrees
python
updated 11 hours ago by
Ram
43k • written 1 day ago by
kuttibiotech2009
▴ 30
0
votes
1
reply
541
views
scRNAseq quality control weird double curve in nFeature vs nCount plot
scRNA-seq
QC
single
cell
BDRhapsody
analysis
updated 1 day ago by
valdirbarth
▴ 20 • written 12 months ago by
Salomé
• 0
0
votes
0
replies
93
views
select set of intervals that cover a genomic region
GRanges
bed
1 day ago by
ntsopoul
▴ 60
1
vote
1
reply
135
views
Tool:
Collect dispersed executable files and run them by using bingo.
bingo
updated 11 hours ago by
Ram
43k • written 1 day ago by
dwpeng
▴ 10
0
votes
1
reply
117
views
BiomartException: Query ERROR for existing dataset in BioMart
biomart
ensembl
wheat
python
pybiomart
updated 4 hours ago by
Nyksubuz
▴ 20 • written 1 day ago by
Luqman
• 0
2
votes
3
replies
198
views
ggrepel function: geom_text_repel()
ggplot2
ggrepel
R
updated 11 hours ago by
Ram
43k • written 1 day ago by
sooni
▴ 20
0
votes
2
replies
153
views
how to treat the replicates while performing WGCNA
clustering
WGCNA
replicates
1 day ago by
mavy
▴ 10
1
vote
1
reply
212
views
Calculate allelic frequency from VEP output vcf file
VEP
variant
1 day ago by
ramiro.barrantes
• 0
1
vote
4
replies
296
views
In one PCA plot, can I calculate the percentage of different factors that contribute to the PCA?
PCA
R
VARIANCE
17 hours ago by
diqixiaoyaoer
▴ 10
2
votes
6
replies
1.9k
views
How can you *consistently* download BioProject IDs from NCBI's BioSample database using Entrez Direct?
XML
ncbi
entrez-direct
updated 1 day ago by
Ram
43k • written 3.9 years ago by
millere
• 0
0
votes
1
reply
148
views
What's next after GATK variant calling pipeline?
GATK
pipeline
figures
DNA-seq
updated 1 day ago by
Michael
54k • written 1 day ago by
mgranada3
▴ 30
0
votes
1
reply
133
views
Add line under stat test
stats
R
updated 6 hours ago by
Nyksubuz
▴ 20 • written 1 day ago by
Ghada
• 0
1
vote
5
replies
784
views
Converting IGV to Figure using Illustrator (or other tools)
Illustrator
IGV
written 6 months ago by
Daniel
▴ 30
0
votes
0
replies
99
views
DOCK6 installation on MacOS M1
installation
troubleshooting
DOCK6
updated 1 day ago by
GenoMax
142k • written 1 day ago by
Rodolfo Adrián
• 0
1
vote
3
replies
189
views
Genotyping sites with N in reference genome
GATK
UnifiedGenotyper
updated 1 day ago by
Zhenyu Zhang
★ 1.2k • written 1 day ago by
shpak.max
▴ 50
2
votes
4
replies
256
views
Can 5' and 3' scRNAseq be processed with the same pipeline?
singlecell
seurat
10XGenomics
scRNAseq
updated 1 day ago by
yura.grabovska
▴ 90 • written 1 day ago by
ev97
▴ 20
1
vote
14
replies
593
views
Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NULL > pointer.
blast
ncbi
4 hours ago by
hophuquy0944
• 0
0
votes
4
replies
231
views
Sequencing Depth (Read Depth) Calculations
depth
1 day ago by
LucisTheFather
• 0
0
votes
1
reply
136
views
Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
annotation
vcf
vep
zygosity
deepvariant
1 day ago by
asalimih
▴ 60
116,992 results • Page
1 of 2340
Recent Votes
Answer: Generating consensus sequence from bam file
Answer: Short Read Data Genome Assembly
Comment: API kegg - IndexError: list index out of range
Comment: How does FindNeighbors() and FindClusters() related and work?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
lncRNA and ncPEPs identification
Answer: Identifying common DEGs among multiple datasets
Recent Locations •
All
Oviedo,
just now
Finland,
2 minutes ago
Germany,
4 minutes ago
Netherlands,
4 minutes ago
Germany,
5 minutes ago
UK,
7 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087,
8 minutes ago
Recent Awards •
All
Popular Question
to
ashkan
▴ 160
Supporter
to
Umer
▴ 50
Scholar
to
zx8754
11k
Teacher
to
Rob
6.6k
Popular Question
to
Nyksubuz
▴ 20
Popular Question
to
Govardhan Anande
▴ 150
Popular Question
to
Lhl
▴ 760
Recent Replies
Answer: How to handle duplicated genes in TCGA data?
by
txema.heredia
▴ 130
Having duplicate gene symbols is pretty common. Why do you need to work with gene symbols? To compare them to external datasets? Or just fo…
Comment: Merge clusters in Seurat UMAP
by
kilcdincer
▴ 10
It did not help either. But I got the answer [here][1] Thank you! [1]: https://github.com/satijalab/seurat/issues/8902
Comment: How to generate table_annovar from VCF input?
by
Pierre Lindenbaum
161k
there is no `--allsample` option in the "usage" screen you're showing. I suspect you're using an old version ?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
egascon
• 0
Thank you very much again. I have learned a lot of things.
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
egascon
• 0
It's a microarryay experiment, not RNASeq
Comment: Sam file Header problem
by
Pierre Lindenbaum
161k
https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
Answer: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
DGTool
▴ 20
I have also recently come across another global alignment algorithm that was recently released which could seem pretty interesting to test …
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
b.contreras.moreira
▴ 190
Not sure, you might ask in the repo, please share here the response if you find it
Comment: How to generate table_annovar from VCF input?
by
LucisTheFather
• 0
Would you be more specific to your question? Do you mean how to debug this syntax error?
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
thank you
Comment: How to extract cells of different species after mapping with combined genome?
by
Tony
• 0
I think this method should be applicable to all high-throughput single-cell RNA-seq platforms. Although the method of determining cell spec…
Comment: BiomartException: Query ERROR for existing dataset in BioMart
by
Nyksubuz
▴ 20
The dataset you want (taestivum_eg_gene) exists within the "plants_mart" schema, not the default schema. Your current code assumes the defa…
Comment: Add line under stat test
by
Nyksubuz
▴ 20
You could use [this][1] [1]: https://ggplot2.tidyverse.org/reference/geom_segment.html
Comment: API kegg - IndexError: list index out of range
by
Nyksubuz
▴ 20
It might be because the gene symbol is not found in the KEGG database. Add some extra error handling before parsing the results or do a man…
Comment: Sam file Header problem
by
saifulislam99121
• 0
Thank you for your reply. I am not very much sure about this RG. Can you explain me a bit?
Traffic: 2402 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6