Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Post does not exist.
Limit : all time
all time
today
this week
this month
this year
121,899 results • Page
1 of 2438
Sort: Rank
Rank
Views
Votes
Replies
0
votes
1
reply
65
views
Subsetting before QC in Spatial Transcriptomics
spatial-transcriptomics
rare-cell-types
quality-control
updated 48 minutes ago by
ATpoint
89k • written 1 hour ago by
Kent
▴ 20
1
vote
2
replies
114
views
Whole Genome Sequencing IG regions
immunoglobulin
wgs
updated just now by
ATpoint
89k • written 2 hours ago by
719
• 0
1
vote
4
replies
299
views
Hifiasm is getting killed while trying to assemble a genome
assembly
genome
hifiasm
57 minutes ago by
pranavdatar01
• 0
0
votes
2
replies
2.4k
views
Transfer harmony-integrated scRNA-seq data to scanpy
scRNA-seq
harmony
updated 15 hours ago by
Madiha
▴ 10 • written 23 months ago by
fifty_fifty
▴ 90
0
votes
0
replies
570
views
News:
Live Online course: Bioinformatic tools for transcriptomic data, Oct 2025
Transcriptomic
analyses
updated 14 hours ago by
GenoMax
153k • written 15 hours ago by
soledad.esteban
• 0
0
votes
1
reply
993
views
Pipeline for downloading, aligning, and curating influenza A and B sequences for primer design
Influenza
workflow
updated 15 hours ago by
GenoMax
153k • written 16 hours ago by
Mariano
• 0
845
votes
170
replies
206k
views
112 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 4 months ago by
Biostar
3.6k • written 8.8 years ago by
Istvan Albert
103k
0
votes
0
replies
711
views
Shift in RNA 3' position, Term-Seq vs RNASeq
RNASeq
Bioinformatics
TermSeq
3 hours ago by
npb27
• 0
1
vote
1
reply
1.2k
views
Different UMAP for batch correction in R and Pytho
harmony
UMAP
15 hours ago by
Madiha
▴ 10
0
votes
1
reply
1.3k
views
GTEx sQTL v8 – annotation version used?
qtl
gencode
sqtl
gtex
updated 21 hours ago by
GenoMax
153k • written 22 hours ago by
pedro.silvestre
• 0
1
vote
2
replies
1.9k
views
TCGA -derived Large RangeSummarizeExperient file
analysis
data
TCGA
updated 1 day ago by
ATpoint
89k • written 1 day ago by
Tom
• 0
3
votes
7
replies
4.9k
views
Yeast reference-based genome assembly
Reference
nanopore
yeast
genome
Assembly
updated 6 hours ago by
colindaven
7.9k • written 1 day ago by
amy967107
• 0
0
votes
8
replies
4.3k
views
magpurify errors
magpurify
data
shotgun
updated 1 day ago by
GenoMax
153k • written 1 day ago by
shevch2009
▴ 20
0
votes
0
replies
1.5k
views
News:
online course: Population Genomics using aDNA Data
Paleogenomics
aDNA
PopulationGenomics
1 day ago by
Physalia-courses
★ 2.6k
2
votes
2
replies
3.4k
views
Structural Variant identification on pangenome graphs
SV
variant
structural
graph
genome
1 day ago by
Panos
★ 1.8k
2
votes
2
replies
2.6k
views
How to Identify Conserved 21-mers Across TE Insertions in Drosophila?
ConsensusSequence
SequenceAlignment
ConservedMotifs
RNAi
TransposableElements
23 hours ago by
manikin_python9f
▴ 20
23
votes
17
replies
34k
views
7 follow
Conversion of Gene Name to Ensembl ID
gene
RNA-Seq
R
genome
updated 1 day ago by
Thanujay S
• 0 • written 5.5 years ago by
bazok
▴ 40
0
votes
5
replies
2.8k
views
Variant analysis for mouse WES
variant-calling
maftools
vcf
genome
wes
updated 1 day ago by
GenoMax
153k • written 2 days ago by
alba
• 0
3
votes
4
replies
3.0k
views
Is this PCA plot correct??
PCA
updated 2 days ago by
GenoMax
153k • written 2 days ago by
m00nphany
• 0
0
votes
0
replies
1.8k
views
metabolite identification related issue
metabolomics
metaboanalyst
2 days ago by
abhisekde038
• 0
0
votes
1
reply
2.2k
views
Strange pattern in pct_counts_mt from bin2cell deconvolved VisiumHD data
spatial-transcriptomics
bin2cell
VisiumHD
2 days ago by
danielpintard
▴ 10
0
votes
1
reply
1.8k
views
Forum:
Splice junctions plots for long-read seq data
splice-junctions
alternative-splicing
long-read-sequencing
updated 1 day ago by
LChart
5.1k • written 2 days ago by
alison.ludzki
• 0
0
votes
0
replies
2.1k
views
News:
Introduction to Nextflow course - online, 10–12 November
Pipeline
NGSdata
Nextflow
Reproducibility
Workflow-Manager
2 days ago by
Physalia-courses
★ 2.6k
33
votes
21
replies
31k
views
12 follow
Converting Ensembl Gene Ids To Hgnc Gene Name / Coordinates
ensembl
ucsc
genome
mapping
coordinates
updated 2 days ago by
Thanujay S
• 0 • written 13.8 years ago by
Ryan D
★ 3.4k
3
votes
4
replies
3.5k
views
How to debug faulty BBmap clumpify command?
bbmap
fastq
trimming
genome
5 hours ago by
marongiu.luigi
▴ 760
1
vote
3
replies
3.7k
views
Best way to do protein structure guided similarity search?
alphafold
BLAST
structure
proteins
updated 2 days ago by
Dunois
★ 2.9k • written 3 days ago by
Mark
▴ 60
0
votes
1
reply
2.7k
views
Finding RNA genes associated with X protein expression in CITE-seq Seurat object
seq
cite
single
cell
updated 2 days ago by
ATpoint
89k • written 3 days ago by
Picasa
▴ 690
1
vote
5
replies
3.4k
views
Need help in Single cell proteomics data analysis
single
cell
updated 3 days ago by
ATpoint
89k • written 3 days ago by
Saber_J
▴ 20
5
votes
2
replies
3.5k
views
Fastq reads to csv - How can I make a csv with the read number of several fastq files in the same folder?
illumina
csv
read
fastq
count
updated 3 days ago by
GenoMax
153k • written 3 days ago by
alx.alo
• 0
1
vote
3
replies
3.6k
views
Mapping amplicon to a reference sequence with iteration / elongation
Barcoding
NGS
Mapping
updated 3 days ago by
mmahe
• 0 • written 4.4 years ago by
marion.couedel
▴ 10
0
votes
1
reply
3.0k
views
MERLIN haplotyping
MERLIN
updated 3 days ago by
Prashant
• 0 • written 3.2 years ago by
smb2174
▴ 20
0
votes
0
replies
2.7k
views
Radial plot help
Radial-Plots
Bulls-eye
updated 2 days ago by
Ram
45k • written 3 days ago by
bioinformatics_rk
▴ 10
1
vote
1
reply
3.1k
views
dbSNP VCF file compatible with GRch38.p14
vcf
samtools
updated 3 days ago by
GenoMax
153k • written 3 days ago by
Kelly
• 0
0
votes
0
replies
2.9k
views
News:
Single-Cell RNA-Seq Analysis
RNA-seq
Single
cell
updated 3 days ago by
GenoMax
153k • written 3 days ago by
oliverhooker
▴ 110
0
votes
0
replies
2.8k
views
News:
Introduction to Snakemake
Snakemake
updated 3 days ago by
GenoMax
153k • written 3 days ago by
oliverhooker
▴ 110
0
votes
0
replies
2.8k
views
News:
course - Introduction to Deep Learning for Biologists -Online, 3–7 November
MachineLearning
Python
ConvolutionalNeuralNetwork
DeepLearning
3 days ago by
Physalia-courses
★ 2.6k
1
vote
7
replies
9.0k
views
6 follow
Low Mapping Rate with Kallisto on RNA-seq Data
RNAseq
mapping
ratio
kallisto
low
updated 3 days ago by
dsull
★ 7.7k • written 10 days ago by
meetmet
▴ 10
5
votes
4
replies
7.3k
views
Is total miRNA in EV constant? Implications for library size normalization.
rna-seq
updated 2 days ago by
Gordon Smyth
★ 8.3k • written 6 days ago by
Thomas.H.Hampton
▴ 10
1
vote
4
replies
4.2k
views
single cell: differential expression between cluster subsets
scrna-seq
statistics
seurat
3 days ago by
Lee
• 0
1
vote
0
replies
2.9k
views
Tool:
evorca: fast and minimal plmDCA in JAX
jax
python
protein-contact-prediction
bioinformatics
plmdca
4 days ago by
Shosuke
▴ 10
2
votes
9
replies
5.0k
views
6 follow
How to load sam.gz files on IGV?
visualization
genome
IGV
mapping
updated 4 days ago by
GenoMax
153k • written 4 days ago by
marongiu.luigi
▴ 760
0
votes
1
reply
3.5k
views
Structural Clustering of Transmembrane Domains of Membrane Proteins
foldseek
structuralbiology
computationalbiology
structuralbioinformatics
bioinformatics
updated 3 days ago by
dthorbur
★ 3.1k • written 4 days ago by
William
• 0
2
votes
3
replies
4.1k
views
Power analysis for miRNA sequecing
power
miRNa
analysis
updated 4 days ago by
GenoMax
153k • written 4 days ago by
abedkurdi10
▴ 190
0
votes
1
reply
3.8k
views
Question regarding batch effect in TCGA-HNSC
Cancer
DESeq2
SVA
TCGA
updated 4 days ago by
ATpoint
89k • written 4 days ago by
Hamada
• 0
1
vote
3
replies
5.8k
views
Where to find known sites for mm39 used by GATK4 BaseRecalibrator?
BaseRecalibrator
mouse
gatk
updated 5 days ago by
iamsmor
• 0 • written 3.4 years ago by
乙
▴ 240
1
vote
2
replies
5.1k
views
Tool 'sra_source' does not exist.
Galaxy
23 hours ago by
Atefeh
• 0
2
votes
2
replies
6.6k
views
50K genomes to gene alignment
genomics
pirate
roary
updated 4 days ago by
michael.ante
★ 4.0k • written 6 days ago by
Madde
▴ 20
1
vote
2
replies
8.0k
views
Automatically annotating a feature using a genbank file
Annotation
genbank
wgs
updated 6 days ago by
Pierre Lindenbaum
166k • written 6 days ago by
Mark
▴ 60
3
votes
1
reply
6.6k
views
Seurat - Warning after rescaling a subset of the data
FindVaraibleFeatures
r
seurat
updated 7 days ago by
Bastien Hervé
6.5k • written 7 days ago by
Assa Yeroslaviz
★ 1.9k
0
votes
6
replies
9.6k
views
Several questions for genereating human genome assembly
Dorado
Genome
Assembly
hifiasm
6 days ago by
tungsega
• 0
121,899 results • Page
1 of 2438
Recent Votes
Comment: Whole Genome Sequencing IG regions
Comment: Hifiasm is getting killed while trying to assemble a genome
Comment: How to debug faulty BBmap clumpify command?
Answer: Yeast reference-based genome assembly
Answer: Structural Variant identification on pangenome graphs
Multiple VCF file comparision
Comment: Different UMAP for batch correction in R and Pytho
Recent Locations •
All
Norway,
just now
Frankrike,
3 minutes ago
Ramat Gan,
4 minutes ago
Germany,
4 minutes ago
Germany,
10 minutes ago
United States,
13 minutes ago
United States,
15 minutes ago
Recent Awards •
All
Popular Question
to
Lawrence
• 0
Popular Question
to
Kent
▴ 20
Popular Question
to
719
• 0
Popular Question
to
Madiha
▴ 10
Scholar
to
colindaven
7.9k
Popular Question
to
abhisekde038
• 0
Popular Question
to
Serij´s
• 0
Recent Replies
Comment: Whole Genome Sequencing IG regions
by
ATpoint
89k
The question is what you are after. Is this a disease setup, or...well, what is this all about. Generally, these regions are hotspots of hy…
Comment: Whole Genome Sequencing IG regions
by
Pierre Lindenbaum
166k
please define "interesting"
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
These are PacBio HiFi reads (total reads 5,237,005), and the total data size is 255 GB. I am the only user on the system.
Comment: Subsetting before QC in Spatial Transcriptomics
by
ATpoint
89k
Yes, absolutely. It is even (to me) a good practice to do (automated) crude celltype assignment first because QC metrics, such as number of…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
I am expecting the genome to be around 1.5 Gb.
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
153k
> I even tried to decrease the number of threads and even used -f0, but nothing is working out. What kind of dataset is this? How many r…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
Panos
★ 1.8k
How large do you expect the genome to be? For some human genomes that I tried it (i.e. genome size ~3Gbp), peak memory usage was ~160GB RAM…
Comment: How to debug faulty BBmap clumpify command?
by
marongiu.luigi
▴ 760
Thank you. I am now using the latest version of BBmap and it works. There must have been a file corruption somewhere.
Comment: Yeast reference-based genome assembly
by
colindaven
7.9k
You're right about contiguity with these exceptionally short ONT reads, but there is no harm in trying. It depends on the repeat content of…
Comment: Transfer harmony-integrated scRNA-seq data to scanpy
by
Madiha
▴ 10
Hi, I am not sure if you still remmeber the solution you followed that time. But I am stuck with similar problem. scVI is not working good …
Answer: Pipeline for downloading, aligning, and curating influenza A and B sequences for
by
GenoMax
153k
Have you looked at https://nextstrain.org/ and specifically https://github.com/nextstrain/seasonal-flu Software is available to do the ana…
Comment: Different UMAP for batch correction in R and Pytho
by
GenoMax
153k
Use this tutorial for how to upload images: https://www.biostars.org/p/309884/#346553 Only difference is instead of using an external imag…
Answer: GTEx sQTL v8 – annotation version used?
by
GenoMax
153k
If you click over to the `Reference` tab ( https://gtexportal.org/home/downloads/adult-gtex/reference ), it looks like they used GENCODE v.…
Comment: How to Identify Conserved 21-mers Across TE Insertions in Drosophila?
by
manikin_python9f
▴ 20
Since they are transposons, we don’t know the exact location of them. We know their sequence of insertions from repeatmasker in dm6 genome.…
Comment: Tool 'sra_source' does not exist.
by
Atefeh
• 0
Thanks for your kindness.
Traffic: 5613 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6