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Ideally yes, recover reads that are NOT host. Yet the Naegleri Fowleri has high similarity to human, so when I assemble the reads I don't…
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Your problem seems to be with `phanotate` version. Generally speaking, that will be best resolved if you directly communicate with the auth…
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What is the main aim here? To recover reads that are NOT host.
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I believe you are right. My mistake! I am confusing NES with upregulation/downregulation, I think. It is a little confusing.
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try log2FoldChange * -10logpvalue and if possible can you cross check it with the library in the link I sent earlier. How can you tell that…
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I used featureCounts to get gene-level counts from RNA-seq BAMs, then ran DESeq2 to get log2FoldChanges and adjusted p-values. Then I took …
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