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116,821 results • Page
1 of 2337
Sort: Rank
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Votes
Replies
0
votes
0
replies
8
views
Phasing a mixture of two individuals' DNA with long reads
long-reads
phasing
7 minutes ago by
njornet
▴ 20
0
votes
0
replies
3
views
Forum:
Exploring Diet Effects in Single-Cell RNA Sequencing
integration
scRNA
seurat
batch_effect
10 minutes ago by
Darya
• 0
0
votes
0
replies
6
views
How do I change the title font size in ViolinPlot (Seurat)
Seurat
Violin-Plot
ggplot2
patchwork
16 minutes ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
7
views
Percentage coverage of reference genome by de novo genome
SAMtools
BWA
alignment
ddRAD
21 minutes ago by
Lemonhope
• 0
0
votes
0
replies
11
views
Why does my Hi-C contact map show large regions making little to no contact?
BWA-MEM2
Hi-C
PretextMap
30 minutes ago by
Winter
• 0
0
votes
3
replies
66
views
A question about reference genome for creating the consensus sequence
fasta
fa
cram
genome
updated 1 hour ago by
ATpoint
82k • written 7 hours ago by
me
• 0
2
votes
11
replies
2.5k
views
6 follow
CNVKIT - unable to produce scatter and diagram pdfs
cnvkit
updated 1 hour ago by
DGTool
• 0 • written 4.8 years ago by
ww22runner
▴ 60
795
votes
167
replies
143k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 3 months ago by
Biostar
2.7k • written 7.4 years ago by
Istvan Albert
100k
0
votes
0
replies
22
views
Error in plotting PCA plot in seurat
PCA
single-cell
seurat
scRNA
RNA
1 hour ago by
Sumeet
• 0
1
vote
1
reply
33
views
java out of memory error through beagle for imutation
beagle
java.out.of.memory
imputation
2 hours ago by
analyst
▴ 40
0
votes
0
replies
23
views
Generating .bed file and .map file for polyploid vcf file through plink
bed
polyploid
map
plink
3 hours ago by
analyst
▴ 40
0
votes
0
replies
22
views
Blog:
Introduction to The Complete Sequence of a Human Genome
biotech
3 hours ago by
usa.cd.genomics
• 0
0
votes
0
replies
20
views
Blog:
Overview of Nanopore Sequencing
biotech
3 hours ago by
usa.cd.genomics
• 0
0
votes
0
replies
45
views
meffil.snp.concordance
meffil
methylation
snp_concordance
8 hours ago by
kyj222637
• 0
0
votes
0
replies
44
views
PseudobulkExpression.Seurat error
Seurat
pseudo-bulk
8 hours ago by
sooni
▴ 20
1
vote
5
replies
347
views
HCL database download
HCL
updated 7 hours ago by
Ram
43k • written 4 days ago by
sooni
▴ 20
0
votes
1
reply
192
views
barcode of TCR-sequencing
barcode
updated 9 hours ago by
mizraelson
▴ 60 • written 7 days ago by
yueli7
▴ 250
0
votes
2
replies
81
views
STAR aligner error
RNA-seq
STAR
slurm
10 minutes ago by
M.
▴ 30
0
votes
0
replies
48
views
monocle 3-- Could not get node in small cluster
monocle3
11 hours ago by
synat.keam
▴ 100
0
votes
1
reply
92
views
Correlating Bulk Differential Expression with quantitative
Differential-Expression
DESeq2
updated 7 hours ago by
Ram
43k • written 12 hours ago by
Nicholas
• 0
1
vote
4
replies
298
views
Understanding STAR output (Aligned.out.sam file)
STAR
paired-end
read
13 hours ago by
heelpPlease
• 0
5
votes
1
reply
125
views
TFs and Gene databases
Transcription-factor
Target
Regulatory-Networks
updated 13 hours ago by
Ram
43k • written 15 hours ago by
ijarne
• 0
0
votes
6
replies
311
views
Applying the metacell2 algorithm using python
python
single-cell
scanpy
metacell2
1 hour ago by
JACKY
▴ 140
0
votes
3
replies
201
views
Filtering Multi-sample VCF file for all except one Genotype
variant
SNP
VCF
updated 13 hours ago by
Ram
43k • written 17 hours ago by
schmince
• 0
0
votes
0
replies
70
views
News:
Online course. -Time series analysis and Forecasting in R
Time-Series
Forecasting
R
Stastics
17 hours ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
420
views
HLA-HD tool for genomic imputation
genomics
imputation
bash
updated 11 hours ago by
Javier
• 0 • written 3 months ago by
fra.r.silvestro
▴ 10
0
votes
1
reply
99
views
ERROR: Duplicate entry "..." in sam header; samtools view: failed to add PG line to the header
sort.
SAMtools.
BAM.
SAM.
updated 18 hours ago by
GenoMax
142k • written 18 hours ago by
Sony
▴ 10
5
votes
5
replies
220
views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
EGSEA
5 hours ago by
Chris
▴ 280
0
votes
1
reply
104
views
Differentail gene expression results
differential
expression
gene
rna-seq
Deseq2
updated 20 hours ago by
ATpoint
82k • written 20 hours ago by
ahmad.sajad4541
• 0
1
vote
5
replies
171
views
UMI-Tools knee-method has great influence on the results of white list
single-cell
whitelist
UMI
RNA
UMI-Tools
updated 18 hours ago by
i.sudbery
19k • written 21 hours ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
122
views
student
epitranscriptomics
updated 21 hours ago by
ATpoint
82k • written 21 hours ago by
useriwa
• 0
0
votes
0
replies
79
views
Imputation of missing genotypes
panel
beagle
imputation
22 hours ago by
analyst
▴ 40
0
votes
3
replies
139
views
trying to count a pattern in my fastq file using bbduk
java
bbduk
bbmap
fastq
updated 18 hours ago by
GenoMax
142k • written 22 hours ago by
Assa Yeroslaviz
★ 1.8k
6
votes
1
reply
115
views
Tutorial:
removeBatchEffect explained using base R linear models
limma
effects
batch
removebatcheffects
updated 22 hours ago by
dariober
14k • written 22 hours ago by
nhaus
▴ 350
2
votes
2
replies
130
views
Is therer any suggestions on mapping rate of WGBS data?
mapping
read
alignment
WGBS
6 hours ago by
Zeng Jingyu
▴ 60
1
vote
2
replies
218
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 22 hours ago by
Weiwen
• 0 • written 1 day ago by
MICOS
▴ 10
0
votes
0
replies
71
views
Correlation Analysis
statistics
methylation
NGS
expression
22 hours ago by
Researcher
▴ 30
1
vote
2
replies
146
views
Repeated testing/data mining in RNA Seq
repeated
RNA-Seq
mining
testing
data
16 hours ago by
robert.flynn.21
• 0
1
vote
1
reply
187
views
Tool:
Converting Nebula Genomics Data to 23andMe Format
23andMe
Nebula
updated 20 hours ago by
Michael
54k • written 1 day ago by
Guillermo
• 0
1
vote
1
reply
107
views
Gene density plot
density
gene
updated 17 hours ago by
dthorbur
★ 1.9k • written 23 hours ago by
gubrins
▴ 290
1
vote
5
replies
239
views
Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, Complexity, and Use Cases
fmindex
bwt
updated just now by
Michael
54k • written 1 day ago by
qwertyuiop26
• 0
0
votes
1
reply
142
views
What is the proper way to identify the cell types of scRNAseq cluster?
scRNAseq
updated 1 day ago by
ATpoint
82k • written 1 day ago by
MAPK2
▴ 40
0
votes
2
replies
186
views
Job:
Bioinformatics Analyst - Laboratory Medicine and Pathology
job
updated 1 day ago by
Xiaofen
• 0 • written 1 day ago by
toddknutson
▴ 60
0
votes
1
reply
114
views
Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genomes
Genomics
Bioinformatics
ATACseq
CancerResearch
updated 1 day ago by
LChart
3.9k • written 1 day ago by
David
• 0
1
vote
2
replies
146
views
Where to get the following bed file?
WES
bed
reference
file
updated 1 day ago by
GenoMax
142k • written 1 day ago by
wyuan37
• 0
0
votes
0
replies
93
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
1 day ago by
Scott McKay
▴ 30
0
votes
0
replies
95
views
Cellphonedb results
cpdb
visulization
cellphonedb
1 day ago by
piotto
▴ 20
0
votes
0
replies
111
views
Job:
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
Genomics
Alzheimer
multiomics
neuroimaging
1 day ago by
belloy
• 0
0
votes
3
replies
205
views
How to compute TPM normalized values for TCGA miRNA data?
TCGA
normalization
TPM
miRNA
updated 1 day ago by
swbarnes2
14k • written 1 day ago by
Ngrin
• 0
1
vote
6
replies
669
views
anRichment is missing
WGCNA
anRichment
updated 1 day ago by
GenoMax
142k • written 5 months ago by
michael.flower.14
▴ 180
116,821 results • Page
1 of 2337
Recent Votes
Comment: java out of memory error through beagle for imutation
Analysis of intronic reads included scRNA-seq data
removeBatchEffect explained using base R linear models
Answer: ChIP-seq datasets: input samples omitted?
Answer: ChIP-seq datasets: input samples omitted?
Answer: Is therer any suggestions on mapping rate of WGBS data?
A: Download full list of SNPs and their coordinates in hg38
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Recent Replies
Comment: STAR aligner error
by
M.
▴ 30
I already told them but they couldn't come up with a useful solution :/
Comment: A question about reference genome for creating the consensus sequence
by
ATpoint
82k
You aligned your data, that is your reference genome to compare against. If you want to change reference then realign.
Comment: Applying the metacell2 algorithm using python
by
JACKY
▴ 140
The vignette I followed, although lacking, seems better since it focuses on doing iterative process. I'll keep looking perhaps I'll find so…
Comment: A question about reference genome for creating the consensus sequence
by
me
• 0
Hi, yes, my cram files cover the whole genome, which is actually individual genome information. I wonder how to adjust the base genome. Tha…
Comment: CNVKIT - unable to produce scatter and diagram pdfs
by
DGTool
• 0
At least according to the documentation, it seems for WGS you can use the `batch --method wgs` option. There is more information here: [htt…
Answer: A question about reference genome for creating the consensus sequence
by
ATpoint
82k
It is the consensus for all reads that overlap a given base, it's not a genome consensus unless your reads cover the entire genome.
Answer: CNVKIT - unable to produce scatter and diagram pdfs
by
Anitha
• 0
Hello everyone, I need to call the CNV from my hunam WGS data. I searched for many tutorial, but I did'nt get any proper procedure. I am tr…
Comment: High Malat-1 expression in single cell data
by
t.montserrat.ayuso
▴ 30
I don't think dropout is playing an important role with Malat1 since it is usually highly expressed. On the other hand, if dropout is still…
Comment: java out of memory error through beagle for imutation
by
analyst
▴ 40
Resolved by increasing heapsize of -Xmx50G
Comment: STAR aligner error
by
Ram
43k
Talk to your HPC sysadmin - array jobs might be getting different kinds of nodes compared to standalone jobs.
Comment: Is therer any suggestions on mapping rate of WGBS data?
by
Zeng Jingyu
▴ 60
Thank you for your answer!
Answer: HCL database download
by
sooni
▴ 20
I solved the problem by conneting another internet exploer. I think it was probably a problem with Chrome itself.
Answer: barcode of TCR-sequencing
by
mizraelson
▴ 60
Hi, What protocol did you use for TCR-seq library preparation? Generally speaking, there is no need to remove barcodes, as MiXCR can work …
Comment: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C
by
qwertyuiop26
• 0
I've implemented fm index with backward search and need an inexact search to implement on FM index, I couldn't understand how fm index coul…
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
Chris Dean
▴ 400
The md5 hash they refer to on line 22 (f46a7ca244afef522b22a11bd33d27b1) appears to map to a *S. aureus* strain, not *S. hominis* (you can …
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