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6
votes
12
replies
1.5k
views
Forum: How to decide when to have local hardware vs cloud computing?
hardware computational-resources cloud
9 months ago by Lluís R. ★ 1.2k
15
votes
11
replies
2.3k
views
7 follow
Forum: BioStars and ChatGPT
ChatGPT Meta GPT
updated 5 months ago by ▴ 590 • written 10 months ago by ▴ 350
18
votes
10
replies
1.8k
views
7 follow
Forum: Add artificial intelligence training related disclaimers to your profile
licensing AI
updated 10 months ago by 53k • written 10 months ago by 98k
7
votes
2
replies
645
views
Forum: Improvement of Wikipedia articles with bioinformatic subjects
Wikipedia Bioinformatics
8 months ago by Matthias Zepper 4.1k
5
votes
4
replies
978
views
Forum: Best BAM viewer in 2022
sam bam
updated 3 months ago by 40k • written 10 months ago by ▴ 70
1.2k
votes
206
replies
53k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 4 months ago by ★ 1.2k • written 12.5 years ago by 21k
10
votes
13
replies
2.5k
views
8 follow
Forum: Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice industry phd
updated 10 months ago by 6.1k • written 10 months ago by ▴ 10
0
votes
2
replies
765
views
Forum: Best Phd Programs in Usa ( Computational Biology)
computational-biology drug-design
updated 9 months ago by 40k • written 12 months ago by • 0
4
votes
5
replies
966
views
6 follow
Forum: Which Bioinformatics Master's degree is better?
career masters
updated 4 months ago by 40k • written 11 months ago by • 0
2
votes
1
reply
664
views
Forum: Package is not available (for R version XXX)？ Manually download and install R packages
installation package R
updated 9 months ago by 5.5k • written 11 months ago by ▴ 30
3
votes
6
replies
824
views
Forum: How to become a moderator and other ways of contributing to Biostars
meta biostars
updated 4 months ago by 40k • written 12 months ago by 6.1k
2
votes
3
replies
729
views
Forum: Experiences with different cloud computing resources / providers
cloud pipeline rna-seq alignment
updated 12 months ago by 21k • written 12 months ago by ▴ 10
19
votes
13
replies
2.0k
views
8 follow
Forum: Can bioinformatics Phds be completely or almost completely done remotely?
PhD
updated 12 months ago by 6.2k • written 12 months ago by ▴ 40
8
votes
13
replies
2.0k
views
8 follow
Forum: Commercial software for genomics / NGS / bioinformatics
NGS software genomics
updated 13 months ago by • 0 • written 13 months ago by ★ 1.3k
4
votes
4
replies
1.1k
views
Forum: Bioinformatics analogies
Bioinformatics
updated 13 months ago by 98k • written 13 months ago by ▴ 40
2
votes
4
replies
974
views
Forum: Is low N in-vivo research a blind spot for RNA-seq?
statistics metascience power sample-size
updated 6 months ago by 40k • written 13 months ago by ▴ 210
2
votes
4
replies
781
views
Forum: strand specific data
strand DNA RNA specific coding
13 months ago by upasana • 0
3
votes
0
replies
582
views
Forum: Let's build a list of Drug Databases including Tyrosine Kinase Inhibitors: Update 1
pharmacology RTK IC50 TKI database
13 months ago by LauferVA 3.7k
7
votes
14
replies
2.0k
views
7 follow
Forum: Why isn't GWAS used in oncology?
gwas association oncology studies somatic cancer
updated 13 months ago by 3.4k • written 13 months ago by ▴ 80
4
votes
4
replies
1.2k
views
Forum: Cloud Computing Services available?
resources Cloud-Computing
updated 9 months ago by 40k • written 15 months ago by ★ 2.4k
2
votes
7
replies
1.1k
views
Forum: Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R plot rna-seq count
updated 14 months ago by 40k • written 14 months ago by ▴ 20
6
votes
3
replies
1.5k
views
Forum: Best formats for storing large amounts of data for random access
file-formats databases
updated 14 months ago by 4.1k • written 14 months ago by 17k
0
votes
1
reply
490
views
Forum: Add an intercept column to a bed file
plink intercept bed
updated 14 months ago by 77k • written 14 months ago by • 0
4
votes
2
replies
1.7k
views
Forum: Best resource for getting a person with a Math/Comp Sci background the right amount of Biology knowledge
biology teaching
updated 9 months ago by 40k • written 14 months ago by 3.7k
0
votes
0
replies
559
views
Forum: Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq normalization RPGC Spikein Normalization
14 months ago by goddy93 • 0
3
votes
1
reply
550
views
Forum: Would an automated NGS analytics platform help research?
ngs data-analysis
updated 14 months ago by 40k • written 14 months ago by • 0
5
votes
2
replies
1.1k
views
Forum: Skills for industry career in bioinformatics
industry
updated 14 months ago by 12k • written 14 months ago by ▴ 10
9
votes
6
replies
1.0k
views
Forum: Programming languages in industry
programming language
updated 15 months ago by 9.7k • written 15 months ago by ▴ 30
2
votes
6
replies
1.0k
views
Forum: Getting the best of RNA-Seq
RNA-Seq isoform gene expression
15 months ago by Antonio R. Franco ★ 5.1k
1
vote
0
replies
566
views
Forum: Not all Over Representation Analyses are the same!
clusterProfiler Analysis fisher hypergeometric ORA Pathway
15 months ago by Francesco ▴ 20
3
votes
2
replies
675
views
Forum: From protein-protein interaction networks to..
workflow computational knowledge limitations
updated 3 months ago by 40k • written 15 months ago by ▴ 50
0
votes
0
replies
556
views
Forum: Best practices for merging vcfs with different positions + different samples?
vcf bcftools genotypes
updated 9 months ago by 40k • written 15 months ago by ▴ 30
24
votes
6
replies
4.6k
views
6 follow
Forum: Awk in Bioinformatics
perl awk shell
updated 10 months ago by 40k • written 5.1 years ago by ★ 9.3k
7
votes
8
replies
1.3k
views
Forum: Can we lock posts related to merging vcf files?
vcf
updated 10 months ago by 40k • written 16 months ago by 2.8k
0
votes
0
replies
505
views
Forum: Bioinformatics for understanding cancer and other diseases
cancer omics
updated 9 months ago by 40k • written 16 months ago by ★ 1.5k
1
vote
3
replies
1.9k
views
Forum: What counts as a valid biological replicate in single cell RNAseq?
statistics biological replicates scRNA-seq
updated 16 months ago by 3.8k • written 16 months ago by • 0
3
votes
3
replies
723
views
Forum: Looking for a PostDoc position in ML-heavy medical bioinformatics in Germany
Germany PostDoc
updated 16 months ago by 26k • written 16 months ago by ★ 2.9k
0
votes
0
replies
236
views
Forum: Can Bioinformatics be used in developing a product?
product company business
updated 9 months ago by 40k • written 16 months ago by ▴ 10
0
votes
2
replies
937
views
Forum: Bioinformatics algorithm tutorials in C++/C
protein gene genome
updated 16 months ago by 53k • written 16 months ago by ▴ 970
34
votes
11
replies
8.7k
views
13 follow
Forum: Gallery: Computational tools for DNA methylation
computational-tools methylation
updated 14 months ago by 40k • written 7.9 years ago by ★ 9.3k
6
votes
8
replies
2.3k
views
Forum: PC build for Nanopore data analysis
python PC pipeline nanopore-sequencing
16 months ago by stan.aanhane ▴ 30
7
votes
6
replies
1.3k
views
Forum: How to learn bioinformatics?
learning
updated 9 months ago by 40k • written 16 months ago by ▴ 10
2
votes
3
replies
684
views
Forum: What is difference between Bioinformatics and Data Science?
Data-Science
updated 9 months ago by 40k • written 16 months ago by ▴ 30
2
votes
2
replies
798
views
Forum: Project ideas
project-ideas
updated 16 months ago by 53k • written 16 months ago by • 0
0
votes
0
replies
454
views
Forum: Beagle5 imputation accuracy
beagle5 DR2 imputation impute2 impute-info
17 months ago by ch333 • 0
1
vote
6
replies
854
views
Forum: Bioinformatics Software Developer job interview steps and what to expect?
interview software-development
updated 15 months ago by 40k • written 17 months ago by • 0
2
votes
2
replies
627
views
Forum: What sequencing method is the most efficient for identifying genes driving rare diseases?
NGS GWAS WGS
updated 9 months ago by 40k • written 17 months ago by • 0
5
votes
5
replies
882
views
Forum: Best book introducing R programming?
coding R
17 months ago by Scottie ▴ 10
4
votes
6
replies
1.2k
views
Forum: How relevant are read numbers in FastQ headers for paired reads?
header fastq number read
17 months ago by Matthias Zepper 4.1k
0
votes
0
replies
528
views
Forum: commonly-used bioinformatics pipeline
Galaxy
updated 9 months ago by 40k • written 17 months ago by ▴ 120
1,000 results • Page 2 of 20
Recent Votes
Answer: tensorQTL interaction issue
Answer: Script for getting summary statistic of any genome using GTF or GFF3 ?
Comment: How do you validate and verify your pipeline's software updates?
Comment: How do you validate and verify your pipeline's software updates?
Answer: GSEA with GO and KEGG datasets
GSEA with GO and KEGG datasets
Answer: Exporting DEGs obtained from DESeq2
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Recent Replies
Comment: How to get sample names and genotype for SNP in multi-sample VCF file by Kevin Blighe 86k
It is difficult for me to comment, as I am not too informed on your IT infrastructure. What I can say is that it would be better to run the…
Answer: Converting from BED to SAF/GFF by alejandrogzi ▴ 30
I recently developed [bed2gff](https://github.com/alejandrogzi/bed2gff) to quickly convert .bed files to a gff3 format, a tool written in R…
Comment: Convert bed12 to GFF by alejandrogzi ▴ 30
Now there is [bed2gff](https://github.com/alejandrogzi/bed2gff), if you want to work only with a gff file!
Comment: Converting different annotation file formats (GTF/GFF/BED) to each other by alejandrogzi ▴ 30
now there is also [bed2gff](https://github.com/alejandrogzi/bed2gff) if you want to convert .bed files to .gff3 files!
Answer: How Do I Convert From Bed Format To Gff Format? by alejandrogzi ▴ 30
I recently developed [bed2gff](https://github.com/alejandrogzi/bed2gff) to quickly convert .bed files to a gff3 format, a tool written in R…
Answer: tensorQTL interaction issue by Solal • 0
Writing a solution for anyone interested. The issue stems from a dosage error, some variant contains only heterozygous individuals and no h…
Answer: The Biostar Handbook. A bioinformatics e-book for beginners. by Qboy • 0
Great book! I love using it to help my mentees to learn bioinformatics better. It would be also fantastic to compile all other necessary Pr…
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by langziv ▴ 50
Thanks. I'll try.
Comment: How to get sample names and genotype for SNP in multi-sample VCF file by avelarbio46 ▴ 30
Hi! I'm trying to parallelize your code (to run on a bunch of files), but it is not working because of multiple processes spawning. Do you …
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by GenoMax 135k
> so I don't think the genome size is available. Perhaps not for your specific strain but plenty of other Kpn genomes are available and th…
Comment: Kimura% of calcDivergenceFromAlign output by 睿紘 • 0
For additional information, "Coverage for each repeat class and divergence (Kimura)" is also the result from calcDivergenceFromAlign.pl
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by langziv ▴ 50
By the way, I run Rockhopper on the untrimmed files, and the full match percentage grew to 20%-30%, and there are 1552 transcripts in the u…
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by langziv ▴ 50
Here are the total bases in 4 fastq files (after adapter removal): 1,027,852,411, 1,041,895,083, 1,121,786,520, 1,299,721,929. I just rem…
Comment: Understanding mother and father alleles in VCF file by c. • 0
actually they didn't tell me which relatives were from mother side and which from father side, you are right. But how can you find related …
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads by GenoMax 135k
Correct. Data that went into the assembly.
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