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Forum: [Meta] Use of AI
AI Artificial-Intelligence meta ChatGPT
updated 2 days ago by 39k • written 4 days ago by ★ 2.9k
2
votes
2
replies
181
views
Forum: Colleges
Colleges india universities
updated 7 days ago by 39k • written 7 days ago by • 0
19
votes
15
replies
1.3k
views
6 follow
Forum: Cross out line in Biostars
meta
updated 15 days ago by 39k • written 5.1 years ago by 5.3k
120
votes
33
replies
36k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 29 days ago by ★ 2.3k • written 9.8 years ago by 11k
100
votes
38
replies
28k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 4 weeks ago by 21k • written 9.6 years ago by ★ 3.6k
26
votes
12
replies
6.9k
views
6 follow
Forum: Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 4 weeks ago by ▴ 10 • written 9.6 years ago by ▴ 50
170
votes
43
replies
16k
views
25 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
updated 5 weeks ago by 11k • written 10.2 years ago by 98k
0
votes
2
replies
323
views
Forum: How to start in bioinformatics?
career
updated 28 days ago by 39k • written 7 weeks ago by • 0
3
votes
4
replies
596
views
Forum: I'm looking for a mentor in Bioinformatics
mentor teaching
7 weeks ago by cwaingartentrabajo • 0
12
votes
5
replies
748
views
6 follow
Forum: Bioinformatics opportunities in Europe?
career
updated 7 weeks ago by ▴ 20 • written 8 weeks ago by • 0
18
votes
14
replies
1.1k
views
7 follow
Forum: What's the general view on point & click bioinformatics for routine analyses?
ngs RNA-Seq next-gen-sequencing
6 weeks ago by Simon ▴ 40
0
votes
0
replies
3.6k
views
Forum: Optimal approach for variant calling with 3 diluted germline sample in one sequencing - Capture Sequencing
germline Calling Variant Capture Sequencing
8 weeks ago by Alexandre Eeckhoutte • 0
11
votes
11
replies
872
views
7 follow
Forum: Any tips in landing a bioinformatic job?
Spain R
updated 9 weeks ago by ★ 2.9k • written 10 weeks ago by ▴ 30
4
votes
2
replies
291
views
Forum: advice on course selection for a bioinformatics career.
career
updated 11 weeks ago by 98k • written 11 weeks ago by • 0
0
votes
1
reply
238
views
Forum: Graduate in molecular biology and genetics
biology genetics Molecular
updated 3 months ago by 130k • written 3 months ago by • 0
3
votes
1
reply
309
views
Forum: Open problems in genomics 2023
genomics pangenomics
updated 3 months ago by 130k • written 3 months ago by 4.9k
5
votes
3
replies
454
views
Forum: Someone posted the same question to StackOverflow and Biostars. The results will blow your mind.
meta
updated 3 months ago by 21k • written 3 months ago by ▴ 60
18
votes
10
replies
1.1k
views
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
3 months ago by bompipi95 ▴ 120
1
vote
0
replies
198
views
Forum: Penetrance versus heritability
penetrance heritability
3 months ago by tacrolimus ▴ 110
10
votes
15
replies
1.0k
views
Forum: How should reference genome fasta files be distributed by UCSC?
reference-genome fasta freeze ucsc-genome-browser
updated 6 days ago by 21k • written 3 months ago by ★ 1.5k
8
votes
4
replies
477
views
Forum: Implementing FAIR data principles to a bioinformatics lab
data
updated 3 months ago by 21k • written 3 months ago by ★ 1.5k
0
votes
0
replies
221
views
Forum: NGSrich - hg38
Coverage NGSrich
3 months ago by RK • 0
5
votes
5
replies
691
views
Forum: Bioinformatics - how to start?
molecular-biology
updated 3 months ago by ★ 23k • written 3 months ago by • 0
8
votes
8
replies
1.2k
views
7 follow
Forum: A Computer Scientist who wants to start Bioinformatics
computer-science books resources ngs
updated 4 months ago by ▴ 10 • written 5 months ago by • 0
7
votes
3
replies
658
views
Forum: Find a research paper for reproducing the results
research paper
updated 4 months ago by 130k • written 4 months ago by ★ 2.5k
1
vote
1
reply
418
views
Forum: Gene ontology vs Gene set enrichment
set enrichment GSEA ontology Gene analysis gene
updated 5 months ago by ★ 3.1k • written 5 months ago by • 0
6
votes
12
replies
1.1k
views
Forum: How to decide when to have local hardware vs cloud computing?
hardware computational-resources cloud
6 months ago by Lluís R. ★ 1.2k
15
votes
11
replies
1.9k
views
7 follow
Forum: BioStars and ChatGPT
ChatGPT Meta GPT
updated 8 weeks ago by ▴ 590 • written 6 months ago by ▴ 320
18
votes
10
replies
1.4k
views
7 follow
Forum: Add artificial intelligence training related disclaimers to your profile
licensing AI
updated 6 months ago by 52k • written 6 months ago by 98k
0
votes
2
replies
2.9k
views
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
6 months ago by SushiRoll ▴ 100
7
votes
2
replies
467
views
Forum: Improvement of Wikipedia articles with bioinformatic subjects
Wikipedia Bioinformatics
4 months ago by Matthias Zepper 3.7k
5
votes
4
replies
688
views
Forum: Best BAM viewer in 2022
bam sam tool-recommendation
6 months ago by Cornelius ▴ 60
1.2k
votes
206
replies
50k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 7 days ago by ★ 1.2k • written 12.2 years ago by 21k
8
votes
4
replies
742
views
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
6 months ago by dlaehnemann ▴ 10
10
votes
13
replies
1.8k
views
8 follow
Forum: Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice industry phd
updated 6 months ago by 6.0k • written 6 months ago by ▴ 10
0
votes
2
replies
612
views
Forum: Best Phd Programs in Usa ( Computational Biology)
computational-biology drug-design
updated 6 months ago by 39k • written 8 months ago by • 0
4
votes
5
replies
700
views
6 follow
Forum: Which Bioinformatics Master's degree is better?
career masters
updated 19 days ago by 39k • written 7 months ago by • 0
1
vote
1
reply
513
views
Forum: Package is not available (for R version XXX)？ Manually download and install R packages
installation package R
updated 5 months ago by 4.9k • written 7 months ago by ▴ 30
3
votes
6
replies
652
views
Forum: How to become a moderator and other ways of contributing to Biostars
meta biostars
updated 19 days ago by 39k • written 8 months ago by 6.0k
2
votes
3
replies
568
views
Forum: Experiences with different cloud computing resources / providers
cloud pipeline rna-seq alignment
updated 8 months ago by 21k • written 8 months ago by ▴ 10
19
votes
13
replies
1.6k
views
8 follow
Forum: Can bioinformatics Phds be completely or almost completely done remotely?
PhD
updated 8 months ago by 6.1k • written 9 months ago by ▴ 40
8
votes
13
replies
1.6k
views
8 follow
Forum: Commercial software for genomics / NGS / bioinformatics
NGS software genomics
updated 9 months ago by • 0 • written 9 months ago by ★ 1.2k
4
votes
4
replies
912
views
Forum: Bioinformatics analogies
Bioinformatics
updated 9 months ago by 98k • written 9 months ago by ▴ 40
2
votes
4
replies
756
views
Forum: Is low N in-vivo research a blind spot for RNA-seq?
statistics metascience power sample-size
updated 10 weeks ago by 39k • written 9 months ago by ▴ 210
2
votes
4
replies
572
views
Forum: strand specific data
strand DNA RNA specific coding
9 months ago by upasana • 0
3
votes
0
replies
434
views
Forum: Let's build a list of Drug Databases including Tyrosine Kinase Inhibitors: Update 1
pharmacology RTK IC50 TKI database
9 months ago by Vincent Laufer ★ 2.9k
7
votes
14
replies
1.7k
views
7 follow
Forum: Why isn't GWAS used in oncology?
gwas association oncology studies somatic cancer
updated 9 months ago by 2.6k • written 10 months ago by ▴ 80
4
votes
4
replies
1.0k
views
Forum: Cloud Computing Services available?
resources Cloud-Computing
updated 6 months ago by 39k • written 11 months ago by ★ 2.3k
2
votes
7
replies
916
views
Forum: Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R plot rna-seq count
updated 10 months ago by 39k • written 10 months ago by ▴ 20
6
votes
3
replies
1.2k
views
Forum: Best formats for storing large amounts of data for random access
file-formats databases
updated 10 months ago by 3.7k • written 10 months ago by 17k
1,000 results • Page 1 of 20
Recent Votes
Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
A: Mouse promoter regions
Answer: How to get information about promoter from bulk-RNAseq?
A: Extracting Flanking Regions across TSS using R scripts
A: Mouse promoter regions
A: Finding zebrafish promoters ENSEMBL
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Recent Replies
Comment: pal2nal -nogap -nomismatch options not working by Marie • 0
Hi, did you end up solving this? I am running into the same issue. Marie
Comment: How to get information about promoter from bulk-RNAseq? by camillab. ▴ 130
and what about enhancer? is it possible to do it from a bulk-RNAseq?
Comment: How to get information about promoter from bulk-RNAseq? by camillab. ▴ 130
yes! clearly the terminology on my side needs to improved!
Comment: How to get information about promoter from bulk-RNAseq? by rpolicastro 12k
Generally speaking, most promoters only initiate transcription for a single gene, with a single gene potentially having multiple promoters …
Answer: How to get information about promoter from bulk-RNAseq? by Trivas ★ 1.2k
I'd probably select the genes of interest from your bulk RNA-seq results then use the UCSC table browser to get the sequence upstream of th…
Comment: How to add annotation columns with specific colors to the heatmap? by Ram 39k
Show us your exact code - it is quite easy to tweak colors in ComplexHeatmap with the `col=` argument.
Comment: VCF file CSQ flag by Ram 39k
True, but it's not technically impossible to annotate GVCFs, which is why I did not address that point.
Comment: Creating a local version of Clustered NR database by PeterC_NCBI ▴ 260
@genomax Sorry for the delay in reply. We're still working out the details of what exactly to provide. One idea is to provide just the rep…
Comment: Shannon's Entropy by Sliding Window in R by rohitsatyam102 ▴ 690
Hi Were u able to achieve this?
Comment: Differences in GTF files hg19 and hg38 by GenoMax 130k
Since this is not an answer to the original question do not add it as such. I moved your last comment to the correct spot it should have be…
Comment: VCF file CSQ flag by Pierre Lindenbaum 154k
if your talking about the gvcf produced by HaplotypeCaller with ERC=GVCF, you don't annote g.vcf files , you must first merge the g.vcf.f…
Comment: [python]sklearn.ensemble.RandomForestClassifier(TypeError: string indices must b by Ram 39k
https://www.biostars.org/u/127538/ : Please delete this question or it will be deleted by moderators in a few days.
Comment: VCF file CSQ flag by Ram 39k
A gvcf files has blocks for both variant loci and non-variant loci, so you won't see a CSQ for each record, only for those variant loci wit…
Comment: Differences in GTF files hg19 and hg38 by heureuse • 0
Thank you very much. I get it from UCSC.
Comment: [python]sklearn.ensemble.RandomForestClassifier(TypeError: string indices must b by Arup Ghosh 3.2k
This post does not fit the theme of this forum.
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