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28
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14
replies
8.3k
views
8 follow
Forum: Should I work first in a Bioinformatics company or get a Ph. D.?
Biochemistry PhD career
updated 12 months ago by 43k • written 8.0 years ago by ▴ 20
4
votes
6
replies
8.3k
views
Forum: TCGA: How to tell if the data is exome or WGS?
wgs mutations tcga exome
updated 19 months ago by 43k • written 8.7 years ago by ▴ 110
60
votes
28
replies
8.3k
views
27 follow
Forum: Jim Robinson of the Integrative Genomics Viewer (IGV) uses this
uses-this
updated 13 months ago by 43k • written 9.6 years ago by 100k
65
votes
57
replies
8.3k
views
12 follow
Forum: Bioinformatics Mobile App
android genome iphone mutations
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 20
64
votes
8
replies
8.2k
views
7 follow
Forum: Isaac Asimov Accurately Predicts Woes Of Bioinformatician
bioinformatician
updated 14 months ago by 43k • written 11.0 years ago by 20k
129
votes
38
replies
8.2k
views
21 follow
Forum: Who are the Greatest Bioinformaticians Of All Time (GBOAT)
bioinformatics
updated 11 months ago by 43k • written 5.1 years ago by 100k
116
votes
35
replies
8.2k
views
18 follow
Forum: Is Biostar Killing The Bioinformatics Core?
core biostars
updated 14 months ago by 43k • written 11.1 years ago by 22k
19
votes
9
replies
8.2k
views
6 follow
Forum: How to support bioinformatics tools via Biostars: prefill and watch tags, reply via email
biostars
updated 14 months ago by 43k • written 10.0 years ago by 100k
36
votes
18
replies
8.1k
views
Forum: How Does Genomebrowse Free Genome Browser From Golden Helix Compare?
visualization genome-browser
updated 3.0 years ago by 20 • written 11.1 years ago by ▴ 140
3
votes
5
replies
8.1k
views
Forum: PopGenome nucleotide diversity
next-gen SNP R gene
updated 12 months ago by 43k • written 8.2 years ago by ▴ 10
27
votes
0
replies
8.1k
views
Forum: Heng Li of BWA and Samtools uses this
uses-this
updated 13 months ago by 43k • written 9.6 years ago by 100k
16
votes
6
replies
8.1k
views
7 follow
Forum: What computer skills should I put on my resume?
resume genome
updated 11 months ago by 43k • written 6.4 years ago by ▴ 30
61
votes
16
replies
8.0k
views
14 follow
Forum: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
library
updated 15 months ago by ★ 1.3k • written 3.5 years ago by 8.4k
8
votes
12
replies
8.0k
views
9 follow
Forum: Mac Osx Confusing Vcf With Vcard
vcf
updated 14 months ago by 43k • written 11.1 years ago by ▴ 80
15
votes
9
replies
8.0k
views
9 follow
Forum: Skills & qualities required to be a Bioinformatician
career skills
updated 22 months ago by 43k • written 7.1 years ago by ▴ 70
5
votes
4
replies
7.9k
views
Forum: Masters In Bioinformatics Vs Masters In Information Technology (Computer Science)
career
updated 13 months ago by 43k • written 10.1 years ago by • 0
34
votes
19
replies
7.9k
views
12 follow
Forum: Programming Language In Bioinformatics
perl python
updated 14 months ago by 43k • written 11.0 years ago by ▴ 260
68
votes
22
replies
7.8k
views
16 follow
Forum: Learning Python: list of resources
python
updated 12 months ago by 43k • written 7.5 years ago by ★ 2.8k
29
votes
4
replies
7.8k
views
Forum: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
software-error bowtie2 bioconda conda tbb
updated 13 months ago by 43k • written 3.1 years ago by ▴ 240
15
votes
6
replies
7.8k
views
Forum: Calling Single-Barcode Samples from Mixed Runs as Dual-Barcode Samples | Possible Illumina Run QC Flags?
Illumina De-Multiplexing barcode quality-scores
updated 14 months ago by 43k • written 5.0 years ago by 8.2k
42
votes
15
replies
7.8k
views
8 follow
Forum: Directions In Bioinformatics And Web-Based Data Visualization: Revisiting Javascript?
data-visualization python r
updated 14 months ago by 43k • written 11.5 years ago by 5.8k
82
votes
32
replies
7.7k
views
13 follow
Forum: Shall We Go Back To Stackexchange?
meta
updated 14 months ago by 43k • written 11.4 years ago by ★ 3.6k
6
votes
5
replies
7.7k
views
Forum: Converting GFF to GTF
GTF GFF
updated 10 months ago by 43k • written 4.1 years ago by 8.5k
5
votes
6
replies
7.6k
views
Forum: Msc Bioinformatics Project Ideas
project
updated 14 months ago by 43k • written 12.0 years ago by ▴ 50
26
votes
12
replies
7.5k
views
6 follow
Forum: Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 11 months ago by ▴ 10 • written 10.5 years ago by ▴ 50
72
votes
18
replies
7.5k
views
17 follow
Forum: What Is One Book Every Bioinformatician Should Read?
books
updated 14 months ago by 43k • written 10.8 years ago by 8.3k
65
votes
27
replies
7.4k
views
14 follow
Forum: What is the reason for most software errors in Bioinformatics according to you?
software-error blast sequencing SNP R
updated 12 months ago by 43k • written 8.1 years ago by ▴ 110
21
votes
8
replies
7.4k
views
Forum: Is there ever a good reason to use a log transformation instead of Box-Cox?
data skew transformation power
updated 2.5 years ago by 100k • written 2.5 years ago by ★ 27k
31
votes
34
replies
7.4k
views
11 follow
Forum: pros- and cons- : programming skills vs. GUI
programming lecture
updated 13 months ago by 43k • written 8.4 years ago by ★ 4.7k
9
votes
1
reply
7.3k
views
Forum: Master in statistics or bioinformatics
masters career statistics
updated 10 months ago by 43k • written 10.0 years ago by ▴ 50
49
votes
27
replies
7.3k
views
10 follow
Forum: Possible augmented reality tools for bioinformatics and current problems
visualization 3D augmented-reality
updated 13 months ago by 43k • written 8.5 years ago by ▴ 90
2
votes
3
replies
7.3k
views
Forum: How To Correctly Speed Up Blast Using Num_Threads
blast blast-plus
updated 14 months ago by 43k • written 10.2 years ago by ▴ 40
49
votes
19
replies
7.3k
views
13 follow
Forum: Why Are There No Proteomics Questions In Biostar?
proteomics biostars
updated 14 months ago by 43k • written 13.5 years ago by ▴ 410
7
votes
1
reply
7.2k
views
Forum: What are chromatin states ?
genome ChIP-Seq
11 weeks ago by rohitsatyam102 ▴ 850
22
votes
16
replies
7.1k
views
9 follow
Forum: Large Tables In Supplementary Pdf In Journal Articles
publication
updated 14 months ago by 43k • written 10.8 years ago by ▴ 530
113
votes
53
replies
7.1k
views
16 follow
Forum: Middle author, but not first author projects. How would you approach this?
authorship career-development
updated 11 months ago by 43k • written 5.1 years ago by ▴ 170
6
votes
16
replies
7.1k
views
6 follow
Forum: Immune repertoire sequencing community
sequencing repseq immunology tcr ig
updated 2.2 years ago by 43k • written 9.7 years ago by 3.5k
12
votes
9
replies
7.1k
views
9 follow
Forum: Bioinformatics and wet lab science combined
career
updated 13 months ago by 43k • written 8.8 years ago by ▴ 40
0
votes
0
replies
7.0k
views
Forum: Optimal approach for variant calling with 3 diluted germline sample in one sequencing - Capture Sequencing
germline Calling Variant Capture Sequencing
12 months ago by Alexandre Eeckhoutte • 0
12
votes
7
replies
7.0k
views
Forum: Differences between SMART-seq2, SMART-seq3, and 10x
cell smartseq UMIs single 10x
updated 4 weeks ago by ★ 5.8k • written 2.6 years ago by ▴ 70
15
votes
6
replies
7.0k
views
Forum: What to look for in a potential postdoc?
genomics Postdoc
updated 13 months ago by 43k • written 9.9 years ago by ▴ 140
18
votes
13
replies
7.0k
views
7 follow
Forum: Being co-first author for two nature series journals, what kinds of job can I find ?
phd
updated 18 months ago by 43k • written 7.4 years ago by ▴ 90
40
votes
11
replies
7.0k
views
9 follow
Forum: "An Explosion Of Bioinformatics Careers" - from Science Careers
career
updated 13 months ago by 43k • written 9.9 years ago by 3.2k
14
votes
5
replies
6.9k
views
Forum: Seurat vs Monocle
R RNA-Seq next-gen single-cell
updated 10 months ago by 43k • written 4.8 years ago by 3.2k
13
votes
1
reply
6.9k
views
Forum: The Ensembl Vep For Easy Analysis Of Your Variants
ensembl VEP variation
updated 14 months ago by 43k • written 10.3 years ago by 23k
28
votes
1
reply
6.9k
views
Forum: Bedops: The Fastest, Most Scalable, And Easily-Parallelizable Genome Analysis Toolkit!
bedops genome-analysis
updated 14 months ago by 43k • written 10.9 years ago by 35k
20
votes
24
replies
6.9k
views
6 follow
Forum: Python or R
RNA-Seq alignment next-gen-sequencing
updated 11 months ago by 43k • written 5.9 years ago by ▴ 160
28
votes
14
replies
6.9k
views
9 follow
Forum: How Do You Use Cloud Computing For Bioinformatics In 2013?
cloud
updated 14 months ago by 43k • written 10.9 years ago by 11k
29
votes
4
replies
6.8k
views
Forum: Biostar Vs. Seqanswers: What Is The Difference?
biostars
updated 14 months ago by 43k • written 11.0 years ago by ★ 1.1k
78
votes
31
replies
6.8k
views
14 follow
Forum: Do Bad Questions Even Exist?
biostars general education
updated 14 months ago by 43k • written 13.2 years ago by 10k
1,000 results • Page 3 of 20
Recent Votes
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Answer: Missing protein (VEGF-A) in String db
Missing protein (VEGF-A) in String db
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Recent Replies
Comment: Missing protein (VEGF-A) in String db by shalespringer • 0
Thank you for replying here; this helped me figure out why MAPK10 was missing from my results. It was also marked as a pseudogene in the En…
Comment: How to convert plink files to Hapmap Format by Sofia • 0
These are the first lines of the output: (Please is it normal to have NA in the P value column ?) CHR …
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by atowns21 • 0
So I used the barcodes that I created (combos of positions 1-10 and 11-20) and I obtained similar alignment stats as the paper I pulled the…
Comment: How to convert plink files to Hapmap Format by Sofia • 0
Thank you so much, it actually worked!
Answer: Rare Disease Variant Pathway Analysis by LauferVA 4.2k
Hi @efc1e545 , First a caveat. the information we most need in order to help guide you to a successful conclusion is not provided in thi…
Answer: Sequence read length shorter than flow cell specification by swbarnes2 14k
The company probably had you share your run with someone who needed the extra bases. So you get the extra bases free. Just use them unle…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix by Ram 43k
Thank you, the `csvtk spread` is super useful. I usually import into R using `lapply` then `Reduce` using `merge` but this might be easier.
Comment: Annovar using R package by DKA ▴ 40
Thank you for your guidance. The thing is that I am unfamiliar with using such environments, unfortunately.
Comment: Treatment VS Control in Single Cell RNAseq analysis by ATpoint 82k
Open a new question, with details.
Comment: Normalize scRNAseq data to housekeeping genes to compare several datasets by ATpoint 82k
I recommend https://bioconductor.org/books/3.18/OSCA.basic/normalization.html as well as the "advanced" section in this book.
Comment: Why gatk VariantAnnotator required bam and coverage files by QX • 0
thank you!
Comment: Treatment VS Control in Single Cell RNAseq analysis by kilcdincer ▴ 10
Hello, I have more or less same experimental setting and was wondering how you proceeded with your analysis? Can I reach its GitHub reposit…
Comment: BLAST using both nucleotides and taxonomic local databases by GenoMax 141k
> I ask this as some BLAST command fields as scinames or sblastnames do not give any output with a classic nt BLAST If that information is…
Answer: BLAST using both nucleotides and taxonomic local databases by 5heikki 11k
This has been discussed [many times][1] [1]: https://www.biostars.org/p/76551/
Answer: why renaming Idents in Seurat object doesn't work? by Bioinfotec ▴ 10
I think when you give indent to seuObj : ```r Idents(seuObj) <- 'RNA_snn_res.0.1' ``` You may wrongly assign other value to it such as `…
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