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1,000 results • Page 3 of 20
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3
votes
5
replies
7.8k
views
Forum: PopGenome nucleotide diversity
next-gen SNP R gene
updated 5 months ago by 40k • written 7.6 years ago by ▴ 10
49
votes
36
replies
7.8k
views
11 follow
Forum: New features and bug fixes for Biostar to work on during Google Summer of Code
meta biostars gsoc
updated 7 months ago by 40k • written 9.4 years ago by ▴ 110
28
votes
14
replies
7.7k
views
8 follow
Forum: Should I work first in a Bioinformatics company or get a Ph. D.?
Biochemistry PhD career
updated 5 months ago by 40k • written 7.4 years ago by ▴ 20
22
votes
15
replies
7.6k
views
11 follow
Forum: RNASeq user experience with Novogene?
RNA-Seq
updated 4 months ago by 40k • written 5.2 years ago by ▴ 80
68
votes
48
replies
7.6k
views
16 follow
Forum: Stranger Things: unexpected limitations of popular tools
samtools hisat2
updated 4 months ago by 40k • written 6.2 years ago by 98k
36
votes
18
replies
7.6k
views
Forum: How Does Genomebrowse Free Genome Browser From Golden Helix Compare?
visualization genome-browser
updated 2.4 years ago by 20 • written 10.5 years ago by ▴ 140
60
votes
28
replies
7.6k
views
27 follow
Forum: Jim Robinson of the Integrative Genomics Viewer (IGV) uses this
uses-this
updated 6 months ago by 40k • written 9.0 years ago by 98k
5
votes
4
replies
7.5k
views
Forum: Masters In Bioinformatics Vs Masters In Information Technology (Computer Science)
career
updated 6 months ago by 40k • written 9.5 years ago by • 0
116
votes
35
replies
7.5k
views
18 follow
Forum: Is Biostar Killing The Bioinformatics Core?
core biostars
updated 7 months ago by 40k • written 10.5 years ago by 21k
34
votes
19
replies
7.4k
views
12 follow
Forum: Programming Language In Bioinformatics
perl python
updated 6 months ago by 40k • written 10.4 years ago by ▴ 260
5
votes
6
replies
7.4k
views
Forum: Msc Bioinformatics Project Ideas
project
updated 7 months ago by 40k • written 11.4 years ago by ▴ 50
8
votes
12
replies
7.4k
views
9 follow
Forum: Mac Osx Confusing Vcf With Vcard
vcf
updated 7 months ago by 40k • written 10.5 years ago by ▴ 80
42
votes
15
replies
7.4k
views
8 follow
Forum: Directions In Bioinformatics And Web-Based Data Visualization: Revisiting Javascript?
data-visualization python r
updated 7 months ago by 40k • written 10.9 years ago by 5.7k
15
votes
9
replies
7.2k
views
9 follow
Forum: Skills & qualities required to be a Bioinformatician
career skills
updated 15 months ago by 40k • written 6.5 years ago by ▴ 70
29
votes
4
replies
7.2k
views
Forum: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
software-error bowtie2 bioconda conda tbb
updated 6 months ago by 40k • written 2.5 years ago by ▴ 240
16
votes
6
replies
7.2k
views
7 follow
Forum: What computer skills should I put on my resume?
resume genome
updated 4 months ago by 40k • written 5.8 years ago by ▴ 30
9
votes
1
reply
7.1k
views
Forum: Master in statistics or bioinformatics
masters career statistics
updated 3 months ago by 40k • written 9.4 years ago by ▴ 50
2
votes
3
replies
7.1k
views
Forum: How To Correctly Speed Up Blast Using Num_Threads
blast blast-plus
updated 6 months ago by 40k • written 9.6 years ago by ▴ 40
26
votes
12
replies
7.1k
views
6 follow
Forum: Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 4 months ago by ▴ 10 • written 9.9 years ago by ▴ 50
61
votes
16
replies
7.1k
views
14 follow
Forum: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
library
updated 8 months ago by ★ 1.3k • written 2.9 years ago by 8.2k
68
votes
22
replies
7.0k
views
16 follow
Forum: Learning Python: list of resources
python
updated 5 months ago by 40k • written 6.9 years ago by ★ 2.8k
72
votes
18
replies
7.0k
views
17 follow
Forum: What Is One Book Every Bioinformatician Should Read?
books
updated 6 months ago by 40k • written 10.2 years ago by 7.9k
82
votes
32
replies
7.0k
views
13 follow
Forum: Shall We Go Back To Stackexchange?
meta
updated 7 months ago by 40k • written 10.8 years ago by ★ 3.6k
65
votes
57
replies
6.9k
views
12 follow
Forum: Bioinformatics Mobile App
android genome iphone mutations
updated 19 months ago by 40k • written 8.9 years ago by ▴ 20
0
votes
0
replies
6.8k
views
Forum: Optimal approach for variant calling with 3 diluted germline sample in one sequencing - Capture Sequencing
germline Calling Variant Capture Sequencing
5 months ago by Alexandre Eeckhoutte • 0
6
votes
5
replies
6.8k
views
Forum: Converting GFF to GTF
GTF GFF
updated 3 months ago by 40k • written 3.5 years ago by 8.2k
49
votes
19
replies
6.7k
views
13 follow
Forum: Why Are There No Proteomics Questions In Biostar?
proteomics biostars
updated 7 months ago by 40k • written 12.9 years ago by ▴ 410
15
votes
6
replies
6.7k
views
Forum: What to look for in a potential postdoc?
genomics Postdoc
updated 6 months ago by 40k • written 9.3 years ago by ▴ 140
15
votes
6
replies
6.7k
views
Forum: Calling Single-Barcode Samples from Mixed Runs as Dual-Barcode Samples | Possible Illumina Run QC Flags?
Illumina De-Multiplexing barcode quality-scores
updated 7 months ago by 40k • written 4.4 years ago by 8.2k
22
votes
16
replies
6.7k
views
9 follow
Forum: Large Tables In Supplementary Pdf In Journal Articles
publication
updated 6 months ago by 40k • written 10.2 years ago by ▴ 510
65
votes
27
replies
6.7k
views
14 follow
Forum: What is the reason for most software errors in Bioinformatics according to you?
software-error blast sequencing SNP R
updated 5 months ago by 40k • written 7.5 years ago by ▴ 110
29
votes
4
replies
6.6k
views
Forum: Biostar Vs. Seqanswers: What Is The Difference?
biostars
updated 7 months ago by 40k • written 10.4 years ago by ★ 1.1k
6
votes
16
replies
6.6k
views
6 follow
Forum: Immune repertoire sequencing community
sequencing repseq immunology tcr ig
updated 18 months ago by 40k • written 9.1 years ago by 3.5k
129
votes
38
replies
6.6k
views
21 follow
Forum: Who are the Greatest Bioinformaticians Of All Time (GBOAT)
bioinformatics
updated 3 months ago by 40k • written 4.5 years ago by 98k
28
votes
1
reply
6.6k
views
Forum: Bedops: The Fastest, Most Scalable, And Easily-Parallelizable Genome Analysis Toolkit!
bedops genome-analysis
updated 6 months ago by 40k • written 10.3 years ago by 35k
40
votes
11
replies
6.6k
views
9 follow
Forum: "An Explosion Of Bioinformatics Careers" - from Science Careers
career
updated 6 months ago by 40k • written 9.3 years ago by 3.2k
6
votes
2
replies
6.6k
views
Forum: Looking For Articles That Used Multi-Omic Techniques For Personalized Or Familial Clinical Studies
proteomics genomics
updated 6 months ago by 40k • written 10.3 years ago by 18k
13
votes
1
reply
6.6k
views
Forum: The Ensembl Vep For Easy Analysis Of Your Variants
ensembl VEP variation
updated 6 months ago by 40k • written 9.7 years ago by 23k
18
votes
4
replies
6.5k
views
Forum: Useful Resource To Self-Study Bioinformatics
resource
updated 7 months ago by 40k • written 10.9 years ago by ★ 1.5k
28
votes
14
replies
6.5k
views
9 follow
Forum: How Do You Use Cloud Computing For Bioinformatics In 2013?
cloud
updated 6 months ago by 40k • written 10.3 years ago by 11k
20
votes
15
replies
6.5k
views
Forum: How To Analyze Your Own Exome
exome filtering analysis vcf variant
updated 2.5 years ago by 40k • written 10.0 years ago by ▴ 130
12
votes
9
replies
6.5k
views
9 follow
Forum: Bioinformatics and wet lab science combined
career
updated 6 months ago by 40k • written 8.2 years ago by ▴ 40
31
votes
34
replies
6.4k
views
11 follow
Forum: pros- and cons- : programming skills vs. GUI
programming lecture
updated 5 months ago by 40k • written 7.8 years ago by ★ 4.7k
12
votes
1
reply
6.4k
views
Forum: Robert Edgar of USearch and MUSCLE uses this
uses-this
updated 6 months ago by 40k • written 9.0 years ago by 98k
49
votes
27
replies
6.4k
views
10 follow
Forum: Possible augmented reality tools for bioinformatics and current problems
visualization 3D augmented-reality
updated 5 months ago by 40k • written 7.9 years ago by ▴ 90
14
votes
5
replies
6.4k
views
Forum: Seurat vs Monocle
R RNA-Seq next-gen single-cell
updated 3 months ago by 40k • written 4.2 years ago by 3.2k
32
votes
14
replies
6.4k
views
9 follow
Forum: Pat Schloss of Mothur uses this
uses-this
updated 6 months ago by 40k • written 8.9 years ago by 98k
25
votes
9
replies
6.4k
views
Forum: Storage Solutions For Genomic Research Centers
data parallel genomics
updated 6 months ago by 40k • written 10.1 years ago by ▴ 140
7
votes
1
reply
6.3k
views
Forum: What are chromatin states ?
genome ChIP-Seq
updated 4 months ago by 40k • written 3.9 years ago by ▴ 750
20
votes
24
replies
6.3k
views
6 follow
Forum: Python or R
RNA-Seq alignment next-gen-sequencing
updated 4 months ago by 40k • written 5.3 years ago by ▴ 160
1,000 results • Page 3 of 20
Recent Votes
A: Using repeat region filter post QC
Online Training - Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023)
Unsupervised clustering on gene expression data
Answer: Identifying common DEGs among multiple datasets
Answer: Identifying common DEGs among multiple datasets
A: what do the headers of the rMATS output files mean?
A: what do the headers of the rMATS output files mean?
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Recent Replies
Answer: How to check RNAseq support for annotated genes? by Michael 53k
To check for support of gene models by RNAseq, there are several proven workflows. I recommend using them all: - Standard RNAseq analysis …
Comment: ATAC-seq troubleshoot - Just Noise by ATpoint 76k
Yes, definitely lots of noise and few peaks for such an experiment. Which celltype is that, and which lab protocol did you use?
Comment: DESeq2 analysis using two featureCounts generated from different studies by abedkurdi10 ▴ 190
What do you mean by gene lists?
Comment: Find potential important genes from bulk-RNA seq experiment by Michael 53k
You can use e.g. the WGCNA package for network analysis. In your case multiple samples this might mean multiple patients or a time series o…
Comment: Assistance with Fungal Genome Annotation Using Maker and BLAST by Edoardo • 0
Thank you so much for your responses. @genomax , I've downloaded both of the databases you recommended. I attempted to combine them into …
Answer: Simulate short-read RNA-seq data from long-read RNA-seq data by Mensur Dlakic ★ 24k
I think you could try doing this, but it wouldn't be appropriate. You'd be bringing long-read errors, which I believe are higher than short…
Comment: Salmon index not progressing by camillab. ▴ 130
I opened tow terminals and one was the code to build a decoy-aware transcriptome and the other was building indexes (no decoy)
Comment: Adding a control sample to bulk RNA-seq by Chris ▴ 180
Thank you for the explanation! So just want to confirm one control with replicate is totally useless even can't use as a reference?
Answer: DESeq2 analysis using two featureCounts generated from different studies by swbarnes2 13k
Comparing samples between labs is a bad idea. Better to generate gene lists from one study from one lab, and gene lists from another study…
Comment: Adding a control sample to bulk RNA-seq by swbarnes2 13k
If a sample wasn't prepared along side your treated samples, it is a different batch. If you had treated and controls in each of two diffe…
Comment: kallisto normalized TPM values without bootstraps by ATpoint 76k
You don't need sleuth. Typically these deconvolutions, or most downstream analysis, is done on the gene- rather than the transcript-level w…
Comment: Salmon index not progressing by ATpoint 76k
If the top $CPU column shows some values in the hundreds then it is doing something (actually when it's > 0%). So based on the screenshot i…
Comment: Salmon index not progressing by camillab. ▴ 130
Thank you. Waiting it's not gonna hurt me, when should I stop hoping and give up is the question? do you know is there a way if I can see i…
Comment: Filtering VCF to divide with equal sizes by Ram 40k
A more efficient way would be to make a 2 column CSV file, one column with the count value and the other with the chr:start-end range, then…
Answer: Filtering VCF to divide with equal sizes by avelarbio46 ▴ 30
I divided my contigs using R, but it was more complex than the program Pierre Lindenbaum made (https://jvarkit.readthedocs.io/en/latest/Vcf…
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