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415 results • Page 4 of 9
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7
votes
6
replies
3.1k
views
Forum: transition to bioinformatics
career wet-lab
updated 11 months ago by 43k • written 5.9 years ago by • 0
7
votes
7
replies
5.0k
views
Forum: Filtering out chromosomes from reference genome
RNA-Seq Alignment
updated 11 months ago by 43k • written 6.0 years ago by 5.3k
7
votes
8
replies
2.4k
views
Forum: Virus Genome Length and GC Content of SARS-COV-2 causing COVID-19
sequence genome
updated 11 months ago by 43k • written 4.1 years ago by ▴ 30
7
votes
13
replies
1.4k
views
Forum: How do you validate and verify your pipeline's software updates?
Validation Verification Quality-Assurance
updated 6 months ago by 43k • written 7 months ago by ▴ 10
7
votes
4
replies
1.2k
views
Forum: Specific question on torturing the data until it confesses
ipa gene-set-enrichment statistics
updated 12 months ago by 43k • written 3.4 years ago by ▴ 330
7
votes
4
replies
2.2k
views
Forum: How hard it is to get a bioinformatics degree in one country but find a career in another country?
career Masters
updated 11 months ago by 43k • written 5.9 years ago by ▴ 10
7
votes
6
replies
1.8k
views
Forum: Bioinformaticians - Am I on the Right Track?
Career
updated 11 months ago by 43k • written 4.4 years ago by ▴ 80
7
votes
3
replies
1.3k
views
Forum: Is it still recommended to avoid macOS Big Sur?
mac
updated 12 months ago by 43k • written 3.4 years ago by ▴ 210
7
votes
4
replies
1.5k
views
Forum: Studying for a Bioinformatics degree
sequence R next-gen gene RNA-Seq
updated 11 months ago by 43k • written 4.3 years ago by ▴ 20
7
votes
9
replies
1.1k
views
Forum: DEG analysis when not replicates are available
NOISeq RNA-Seq edgeR
updated 11 months ago by 43k • written 4.1 years ago by ★ 5.1k
7
votes
5
replies
956
views
Forum: scRNA rising in popularity, what comes next?
scRNA
updated 11 months ago by 43k • written 4.1 years ago by ▴ 20
7
votes
6
replies
2.8k
views
7 follow
Forum: Should I specialise in bioinformatics?
career
updated 11 months ago by 43k • written 5.6 years ago by ▴ 10
7
votes
8
replies
1.3k
views
Forum: Guidelines / Limits for Shared Bioinformatics Support
Core Shared-Resources Collaboration
updated 11 months ago by 43k • written 4.5 years ago by 8.2k
7
votes
10
replies
1.8k
views
Forum: Current MCB major thinking of going into Bioinformatics
career
updated 11 months ago by 43k • written 5.7 years ago by • 0
7
votes
5
replies
1.8k
views
Forum: Which is better: webgestalt vs david?
webgestalt david
updated 11 months ago by 43k • written 5.2 years ago by ★ 9.4k
7
votes
20
replies
2.1k
views
Forum: NGS RNA-Seq Analysis Pipeline Tophat vs STAR
STAR RNA-Seq TopHat
updated 12 months ago by 43k • written 3.3 years ago by ▴ 10
7
votes
7
replies
1.8k
views
Forum: Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career advice
updated 29 days ago by ★ 2.5k • written 4 weeks ago by • 0
7
votes
8
replies
761
views
Forum: Bioinformatics career transition
career forum
updated 8 weeks ago by ★ 16k • written 8 weeks ago by ▴ 20
6
votes
5
replies
13k
views
Forum: Single-end sequencing versus paired-end
Assembly snp sequencing
updated 11 months ago by 43k • written 4.2 years ago by ▴ 20
6
votes
5
replies
2.3k
views
Forum: Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
6 months ago by tshtatland ▴ 190
6
votes
8
replies
4.0k
views
6 follow
Forum: Workstation : More RAM or Faster RAM
RAM Configuration workstation
updated 11 months ago by 43k • written 5.6 years ago by ▴ 20
6
votes
4
replies
425
views
Forum: Ideal PC configurations and operating system for bioinformatics laboratory
PC
12 days ago by Estevão ▴ 10
6
votes
4
replies
2.5k
views
Forum: Ru/Read Until in Nanopore sequencers
Oxford-Nanopore alignment sequencing
updated 11 months ago by 43k • written 4.2 years ago by ★ 1.7k
6
votes
5
replies
1.7k
views
Forum: Very generally speaking, what are valid criteria to decide that a sample is an outlier?
outliers
updated 12 months ago by 43k • written 3.4 years ago by ▴ 330
6
votes
5
replies
1.1k
views
Forum: A free temporary HPC service for bioinformatic analysis
HPC
updated 11 months ago by 43k • written 4.2 years ago by ▴ 340
6
votes
5
replies
1.4k
views
7 follow
Forum: What do you think of sci-hub?
sci-hub
updated 11 months ago by 43k • written 4.4 years ago by • 0
6
votes
5
replies
1.0k
views
Forum: Russian universities for the study of biomedicine
russian-university
updated 11 months ago by 43k • written 3.8 years ago by ▴ 30
6
votes
7
replies
1.3k
views
Forum: Questions going missing?
meta biostars
updated 12 months ago by 43k • written 6.6 years ago by 88k
6
votes
6
replies
1.3k
views
Forum: How can I deal with this publication issue?
publication
updated 11 months ago by 43k • written 6.1 years ago by ▴ 10
6
votes
6
replies
2.5k
views
Forum: Trouble finding job with MS in Bioinformatics
next-gen
updated 11 months ago by 43k • written 6.0 years ago by ▴ 10
6
votes
3
replies
1.7k
views
Forum: lincRNA analysis pipeline and relevant database
lncRNA
updated 11 months ago by 43k • written 5.6 years ago by ★ 9.4k
6
votes
5
replies
1.9k
views
Forum: Stanford HCP MS Biomedical Informatics vs Johns Hopkins MS Bioinformatics
career
updated 11 months ago by 43k • written 4.3 years ago by ▴ 70
6
votes
5
replies
960
views
Forum: Tips on: How to organise data on servers
genotype warehouse servers
updated 11 months ago by 43k • written 4.5 years ago by ▴ 110
6
votes
5
replies
7.8k
views
Forum: Converting GFF to GTF
GTF GFF
updated 11 months ago by 43k • written 4.2 years ago by 8.6k
6
votes
1
reply
2.3k
views
Forum: How to become employable in Bioinformatics, starting with degree and experience in CS/Software Engineering?
computer-scientist software-engineer
updated 11 months ago by 43k • written 5.8 years ago by • 0
6
votes
15
replies
1.7k
views
Forum: PhD Bioinformatics on GWAS
SNP GWAS genome PHD
updated 11 months ago by 43k • written 4.3 years ago by ▴ 50
6
votes
2
replies
687
views
Forum: how to start Bioinformatics?
basics
updated 5 months ago by ★ 27k • written 5 months ago by • 0
6
votes
6
replies
807
views
Forum: You have 3 days of zero obligations and expansive resources. What are you building?
hypothetical thought-experiment
9 weeks ago by jared.andrews07 ★ 16k
5
votes
2
replies
406
views
Forum: Can questions and answers on biostars be asked only in English? Can't I use Russian for example?
language
updated 7 weeks ago by 54k • written 7 weeks ago by • 0
5
votes
8
replies
2.0k
views
7 follow
Forum: Ranking of Bioinformatics tools & resources by the number of users
bioinformatics-tools
updated 11 months ago by 43k • written 5.7 years ago by ▴ 40
5
votes
2
replies
357
views
Forum: Bioinformatics: Where do I start
Sequencing
updated 28 days ago by 43k • written 28 days ago by ▴ 20
5
votes
4
replies
1.2k
views
Forum: Consider CodeOcean or other solutions for runnable Biostars answers?
CodeOcean how-to meta
updated 11 months ago by 43k • written 4.0 years ago by 22k
5
votes
3
replies
638
views
Forum: Binning the rare biosphere
metagenomics soil assembly techniques binning
updated 4 months ago by ★ 27k • written 4 months ago by ▴ 20
5
votes
5
replies
941
views
Forum: What will happen to data analysts after COVID-19 pandemic
COVID
updated 11 months ago by 43k • written 4.1 years ago by ★ 4.3k
5
votes
4
replies
599
views
Forum: Would reaching out to local labs and startups help with my career transition?
career volunteering
updated 11 weeks ago by 142k • written 11 weeks ago by ▴ 10
5
votes
6
replies
1.1k
views
Forum: COVID19 testing - can we/should we use NGS?
NGS covid19 diagnostics
updated 11 months ago by 43k • written 4.2 years ago by ★ 1.4k
5
votes
4
replies
1.0k
views
Forum: I always get the same Scholar Badge
meta
updated 11 months ago by 43k • written 6.1 years ago by 16k
5
votes
3
replies
1.4k
views
Forum: Seeking ideas and guidance for an undergraduate project
modelling drug-discovery neural-network
updated 11 months ago by 43k • written 5.6 years ago by ▴ 10
5
votes
6
replies
1.3k
views
Forum: The best way to share scientific findings with community
Scientific-findings
updated 12 months ago by 43k • written 6.6 years ago by ★ 4.3k
5
votes
7
replies
1.8k
views
Forum: Research Bazaar 2018
course workshop
updated 12 months ago by 43k • written 6.4 years ago by 8.5k
415 results • Page 4 of 9
Recent Votes
Comment: Bamutils/ClipOverlap
Comment: How to calculate coverage of Nanopore long read data?
Comment: Overlapping Ranges within Granges object
Answer: Difference between Genotype 0|1 and 1|0 in VCF file?
Answer: how to keep reads in a fasta file based on a seq id list in R?
Answer: The total expressed genes in RNA-Seq data
C: Re-arrange conditions in Seurat
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Recent Replies
Comment: BWA alignment by a.alnawfal.1992 ▴ 260
that's great, but i believe the issue is related to stdin rather than index
Comment: BWA alignment by a.alnawfal.1992 ▴ 260
it is not!!
Comment: How to calculate coverage of Nanopore long read data? by Arton • 0
Thank you! I eventually used the information generated by three tools (samtools coverage+ mosdepth + NanoPlot).
Comment: Alphaphold 3 pLDDT coloring scheme in chimerax? by mbrav005 • 0
Thank you Sir! you are right my model is not very good. Do You know how I can improve the scores. Also I am able to color the structure by …
Comment: Polish a large genome with Pilon by sansan_96 ▴ 90
..........
Comment: Overlapping Ranges within Granges object by ntsopoul ▴ 60
you are on to something… if I use reduce to find the “overlaping regions” in a secon GRanges object, what do I do next?
Comment: Using ggplotly in R by jen ▴ 10
Thank you Jared for your response. I took a look at the documentation you provided and am trying my best to follow along, but can't seem to…
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred by Juke34 8.6k
Right I heard there is an issue since Perl v5.36. You may have better luck using conda. Or the best way is to use the container. Or downgra…
Answer: Alphaphold 3 pLDDT coloring scheme in chimerax? by Mensur Dlakic ★ 27k
pLDDT scores are stored in the so-called B-factor column in PDB files. Below the `File` ribbon select `Molecule Display` and click on `b-fa…
Comment: Genome Visualization Tools by dlera.lozano ▴ 10
Thank you so much
Answer: Doubt about the process of annotation, detection, identification and classificat by Mensur Dlakic ★ 27k
Depends on the context. `TE detection` and `TE identification` could mean the same thing if they refer to presence/absence of TEs. `TE iden…
Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr by Ram 43k
Please accept your own answer to mark the post as solved.
Comment: RSeQC : infer_experiment.py Error: Could not retrieve index file by Ram 43k
A small educational note: if an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accep…
Comment: RSeQC : infer_experiment.py Error: Could not retrieve index file by Prawesh • 0
thanks, it's working now.
Answer: Genome Visualization Tools by GenoMax 142k
@cmdcolin has a great list here: https://github.com/cmdcolin/awesome-genome-visualization
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