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1,000 results • Page
3 of 20
Sort: replies
Rank
Views
Votes
Replies
7
votes
8
replies
653
views
Why are the basics so complicated? Basic coverage filtering for VCF files
filter
vcf
coverage
updated 13 days ago by
spen
▴ 40 • written 16 days ago by
MBarcelo
▴ 40
3
votes
8
replies
490
views
PCA plot (Suggestions Needed)
DESeq2
PCAplot
updated 1 day ago by
swbarnes2
14k • written 2 days ago by
Aaliya
▴ 10
0
votes
8
replies
524
views
STAR aligner options
STAR
28 days ago by
theophile
• 0
6
votes
8
replies
544
views
BRAKER3 genome annotation
annotation
BRAKER3
genome
updated 8 days ago by
dariober
14k • written 11 days ago by
manaswiniparija3
▴ 40
3
votes
8
replies
4.9k
views
An idea to identify batch effects
microarray
batch-effect
updated 7 days ago by
Ram
43k • written 9.7 years ago by
mjarosz
• 0
6
votes
8
replies
2.1k
views
Simple explanation and usage of WGCNA package?
wgcna
RNA-Seq
ChIP-Seq
updated 17 days ago by
mflab
• 0 • written 3.9 years ago by
m.sadman.sakib
▴ 120
1
vote
8
replies
682
views
6 follow
Finding insert sequences using long reads
insert-sequences
Nanopore
long-read-assembly
updated 16 days ago by
Anand Rao
▴ 630 • written 7 weeks ago by
bvm
▴ 20
3
votes
8
replies
4.1k
views
Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
fpkm
scRNA-seq
RNA-Seq
tpm
batch-effect
updated 7 days ago by
Ram
43k • written 4.6 years ago by
hkarakurt
▴ 180
0
votes
8
replies
305
views
Error in cnetplot enrichplot package
R
updated 3 days ago by
Ram
43k • written 3 days ago by
Farhad
• 0
1
vote
7
replies
5.1k
views
How do I plot several sns.clustermap heatmaps in a single figure?
python
seaborn
updated 15 days ago by
Wubin
▴ 40 • written 3.4 years ago by
roy.granit
▴ 880
0
votes
7
replies
415
views
Salmon Quantification in Alignment based-mode
Salmon
RNA-seq
TPM
updated 29 days ago by
GenoMax
141k • written 29 days ago by
Patadu94
• 0
7
votes
7
replies
5.9k
views
6 follow
How to know synonymous and non-synonymous SNPs from transcriptome sequencing
RNA-Seq
SNP
updated 16 hours ago by
rohitsatyam102
▴ 850 • written 6.1 years ago by
smallfish
▴ 10
0
votes
7
replies
1.9k
views
Batch effect correction in RNASeq data and plot Dendrograms cluster
clustering
dendrogram
RNA-Seq
batch-effect
updated 7 days ago by
Ram
43k • written 4.0 years ago by
Ankit
▴ 500
10
votes
7
replies
7.1k
views
6 follow
Convert GVF to VCF
vcf
updated 9 days ago by
george-hall-ucl
• 0 • written 9.2 years ago by
win
▴ 970
7
votes
7
replies
1.0k
views
Prediction tools summary - zero values
statistics
updated 9 days ago by
Дана
• 0 • written 6 months ago by
Lukas
▴ 50
2
votes
7
replies
5.2k
views
6 follow
Memory usage of picard Samsort
Picard
SortSam
updated 6 days ago by
ATpoint
82k • written 7.2 years ago by
boymin2020
▴ 80
3
votes
7
replies
1.0k
views
Can I use batch effect correction "by parts"?
ComBat
RNA-Seq
batch-effect
updated 8 days ago by
Ram
43k • written 4.3 years ago by
n,n
▴ 360
0
votes
7
replies
399
views
DESeq: too low p-value for RNAseq
R
DESeq
p-value
RNA-seq
FDR
updated 21 days ago by
Papyrus
★ 2.9k • written 21 days ago by
doramora
▴ 10
3
votes
7
replies
961
views
How much adapters is it ok to keep in my samples after RNA seq?
RNA-seq
illumina
adapters
updated 21 days ago by
Ram
43k • written 5 months ago by
bioinfo
▴ 150
3
votes
7
replies
458
views
Integration of transcriptomics and proteomics: difficult matching names
rna-seq
tmt
nomenclature
proteomics
9 days ago by
ntsopoul
▴ 60
5
votes
7
replies
2.7k
views
DESeq2 for differential gene expression on GTEx dataset
differential-gene-expression
RNA-Seq
GTex
DESeq2
updated 16 days ago by
Ram
43k • written 6.4 years ago by
vikram
▴ 10
7
votes
7
replies
1.1k
views
Forum:
Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career
advice
updated 10 days ago by
Dunois
★ 2.5k • written 11 days ago by
AdviceSeeker
• 0
1
vote
7
replies
15k
views
7 follow
How To Annotate Methylation 450K?
methylation
updated 21 days ago by
Vassilis
• 0 • written 10.1 years ago by
liu4gre
▴ 210
0
votes
7
replies
476
views
Selection criteria for nanobody
Nanobody
updated 24 days ago by
LChart
3.9k • written 25 days ago by
farahnazir2
• 0
4
votes
7
replies
2.4k
views
Batch effects vs biological variables
Batch-effect
DESeq2
combat_seq
updated 17 days ago by
Ram
43k • written 3.7 years ago by
l.uva
▴ 20
4
votes
7
replies
560
views
Can any JBrowse2 tracks show multiple colors for reads at different nucleotide positions?
JBrowse
JBrowse2
updated 24 days ago by
cmdcolin
★ 3.8k • written 27 days ago by
I0110
▴ 140
7
votes
7
replies
550
views
Can you suggest a protein PDB that has two chainst but only 50 total number of atoms?
protein
pdb
protein-databank
updated 13 days ago by
Matthias Zepper
4.5k • written 13 days ago by
4fzcgueyp5
• 0
4
votes
7
replies
4.5k
views
snakemake output directory
snakemake
ngs
updated 9 days ago by
进
• 0 • written 3.9 years ago by
Peter Chung
▴ 200
4
votes
7
replies
591
views
UK biobank versus Genomics England
WGS
DRAGEN
GenomicsEngland
UK-BRAP
vcf
written 12 weeks ago by
zizigolu
★ 4.3k
2
votes
7
replies
5.1k
views
9 follow
problem with HOMER findMotifsGenome.pl
HOMER
ATAC-Seq
updated 15 days ago by
kaaz
• 0 • written 5.5 years ago by
ste.lu
▴ 80
2
votes
7
replies
509
views
STARsolo ; Reads are NOT mapped to transcriptome
STARsolo
updated 14 days ago by
GenoMax
141k • written 16 days ago by
gdfsnkfns
• 0
1
vote
7
replies
464
views
Installing Cell Ranger
cellranger
23 days ago by
gdfsnkfns
• 0
2
votes
7
replies
5.7k
views
8 follow
How to access specifically 30x NA12878 sequencing runs
giab
benchmark
fastq
wgs
data-access
updated 23 days ago by
geocarvalho
▴ 360 • written 5.1 years ago by
Fungsten
• 0
2
votes
7
replies
814
views
Removing duplicates
duplicates
ONT
minimap2
updated 7 days ago by
joe
▴ 510 • written 8 days ago by
quentinperriere
• 0
6
votes
7
replies
1.6k
views
How to assess RNA-Seq batch correction success?
Combat
RNA-Seq
Limma
DESeq2
batch-effect
updated 7 days ago by
Ram
43k • written 4.9 years ago by
borkk
▴ 140
1
vote
7
replies
433
views
fastp - can I trim specific adapters only?
trimming
fastp
adapter
14 days ago by
liorglic
★ 1.4k
4
votes
7
replies
409
views
To get p-values for the TPM
P-value
TPM
RSEM
updated 1 day ago by
dsull
★ 5.8k • written 2 days ago by
VITALA
• 0
3
votes
7
replies
518
views
Artificial deletion in bam
bam
updated 20 days ago by
Zhenyu Zhang
★ 1.2k • written 21 days ago by
enee
▴ 10
4
votes
7
replies
550
views
DESeq2 Multifactor Design
RNA-seq
DESeq2
updated 12 days ago by
Ram
43k • written 13 days ago by
AHerik
▴ 20
0
votes
7
replies
6.0k
views
Pre-processing of RNA-Seq data for WGCNA
RNA-Seq
WGCNA
removeBatchEffect
DESeq2
updated 9 days ago by
Ram
43k • written 7.6 years ago by
gokce.ouz
▴ 70
0
votes
7
replies
648
views
Help with summarizeOverlaps function in RNASeq analysis using R
R
RNA-Seq
summarizeOverlaps
GenomicAlignments
updated 18 days ago by
BioinfGuru
★ 1.7k • written 27 days ago by
FJCF
• 0
3
votes
6
replies
2.4k
views
How to adjust by multiple variables using ComBat-Seq?
CombatSeq
combat
rna-seq
sva
batch-effect
updated 9 days ago by
Ram
43k • written 21 months ago by
ev97
▴ 20
0
votes
6
replies
301
views
How to slice a gvcf file with tabix?
Tabix
bed
gvcf
2 days ago by
Sd
• 0
1
vote
6
replies
416
views
Rename multiple fastq.gz files
fastq
next-gen
updated 9 days ago by
shenwei356
8.4k • written 9 days ago by
Jérémie
• 0
4
votes
6
replies
3.9k
views
Correcting for batch effect in RNA-seq data
RNA-Seq
batch-effect
updated 8 days ago by
Ram
43k • written 4.8 years ago by
Rimma
▴ 30
2
votes
6
replies
5.2k
views
How to avoid over-correction by using harmony or CCA to batch correction in scRNA-seq?
scRNA-seq
R
seurat
harmony
batch-effect
updated 7 days ago by
Ram
43k • written 3.7 years ago by
Lukadon77
• 0
3
votes
6
replies
644
views
Ciriquant not configuring hisat2 indexed files
ciriquant
4 days ago by
Atul K.
• 0
3
votes
6
replies
4.1k
views
how do Differential gene expression analysis by Salmon output
differential-gene-expression
Salmon
updated 16 days ago by
Ram
43k • written 5.5 years ago by
lkianmehr
▴ 100
2
votes
6
replies
512
views
Correcting coordinates in gff3 file
awk
unix
gff3
python
updated 13 days ago by
Matthias Zepper
4.5k • written 15 days ago by
hulu
• 0
2
votes
6
replies
453
views
KEGG analysis in R
KEGG
clusterProfiler
Zea-mays
14 days ago by
sansan_96
▴ 80
1,000 results • Page
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Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
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