Limit : all time
all time today this week this month this year
353 results • Page 1 of 8
Sort: Rank
Rank Views Votes Replies
1
vote
0
replies
156
views
Tutorial: Analysis of Smart-Seq3 data with kallisto-bustools
single-cell kallisto transcriptomics smart-seq3 pipeline
7 days ago by firestar ★ 1.5k
10
votes
7
replies
759
views
Tutorial: Sequence Alignment from Scratch with BWA
alignment bwa DNA
5 days ago by barslmn ★ 1.2k
1
vote
1
reply
253
views
Tutorial: Converting TSV file to VCF
vcf preprocessing frequency
updated 19 days ago by 152k • written 19 days ago by ★ 1.2k
1
vote
0
replies
218
views
Tutorial: Prediction of Ribosomal RNA Genes Using RNAmmer Software
rRNA RNAmmer Annotation Genome
27 days ago by Dr.Animo ▴ 40
0
votes
0
replies
312
views
Tutorial: GEO data mining (III) - Gene pathway enrichment analysis with complete code sharing
geo mining enrichment data Gene pathway RNA-Seq R
4 weeks ago by Novogene ▴ 210
0
votes
0
replies
413
views
Tutorial: GEO Data Mining (II) - Differential gene expression analysis and visualization with complete code sharing
geo mining differential data expression RNA-Seq gene R
4 weeks ago by Novogene ▴ 210
1
vote
0
replies
237
views
Tutorial: GEO data mining (IB) - Downloading Sequence Read Archive (SRA) raw data
geo mining datasets data SRA RNA-Seq
4 weeks ago by Novogene ▴ 210
1
vote
0
replies
319
views
Tutorial: Gene Expression Omnibus Data Mining (IA): Quick and easy download of GEO data
geo mining data RNA-Seq R
5 weeks ago by Novogene ▴ 210
41
votes
1
reply
5.8k
views
Tutorial: Basic normalization, batch correction and visualization of RNA-seq data
edger tutorial rna-seq
6 weeks ago by ATpoint 68k
1
vote
3
replies
347
views
Tutorial: Gibbs Sampling Algorithm Implementation for Searching DNA Motifs
montecarlo DNA motif gibbs sampling splice
updated 6 weeks ago by 125k • written 6 weeks ago by ★ 1.2k
76
votes
19
replies
68k
views
13 follow
Tutorial: How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
samtools bcftools htslib Tutorial
updated 8 days ago by • 0 • written 4.5 years ago by ▴ 520
72
votes
60
replies
22k
views
16 follow
Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
1000 genomes PCA VCF PLINK Tutorial
updated 8 weeks ago by • 0 • written 5.4 years ago by 84k
82
votes
28
replies
27k
views
19 follow
Tutorial: How to create a mutation landscape (waterfall) plot with GenVisR
GenVisR BioConductor R Graphics Tutorial
updated 12 weeks ago by 125k • written 6.9 years ago by 20k
12
votes
31
replies
4.5k
views
6 follow
Tutorial: gene set filter/selection for training ab initio annotation tools
gene geneset abinitio Tutorial genome
3 months ago by Juke34 7.5k
1
vote
2
replies
394
views
Tutorial: ViennaRNA package installation in Windows
install mfold viennarna rna windows
updated 4 months ago by 9.5k • written 4 months ago by ▴ 20
1
vote
0
replies
242
views
Tutorial: Making LDA Score plot
LDA metagenomics
4 months ago by rohitsatyam102 ▴ 690
128
votes
122
replies
27k
views
23 follow
Tutorial: Survival analysis with gene expression
survival analysis cox geo gene expression Tutorial
updated 4 months ago by • 0 • written 4.3 years ago by 84k
9
votes
7
replies
5.0k
views
Tutorial: ClusterProfiler A software for functional enrichment of differentially expressed genes- A tutorial
Software clusterProfiler Tool rna-seq tool
updated 4 months ago by • 0 • written 23 months ago by ▴ 210
11
votes
1
reply
2.0k
views
Tutorial: Dealing with nanopore fast5 files compressed with vbz
hdf5 nanopore fast5 vbz MinKNOW
updated 5 months ago by ★ 1.8k • written 12 months ago by 14k
13
votes
8
replies
2.4k
views
Tutorial: Setting up Aspera Connect (ascp) on Linux and macOS
aspera ascp
10 weeks ago by ATpoint 68k
79
votes
21
replies
13k
views
16 follow
Tutorial: Gene Set Enrichment Analysis
microarray enrichment Tutorial GSEA RNA-Seq
6 weeks ago by Hamid Ghaedi 2.8k
3
votes
0
replies
406
views
Tutorial: Automated dbSNP lookup by rsID position, plus genome build liftover
rsid hg19 liftover hg38 dbsnp
5 months ago by Kevin Blighe 84k
27
votes
0
replies
2.5k
views
Tutorial: Building Docker images
singularity docker container
6 months ago by ATpoint 68k
1
vote
1
reply
12k
views
Tutorial: Docker denied: requested access to the resource is denied
docker
updated 6 months ago by ★ 2.5k • written 6 months ago by ▴ 10
83
votes
34
replies
15k
views
21 follow
Tutorial: Enrichment Analysis, Clustering and Scoring with pathfindR
R pathway enrichment active subnetwork Tutorial
updated 6 months ago by 37k • written 4.6 years ago by ★ 1.3k
78
votes
2
replies
53k
views
Tutorial: How To Ask Good Questions On Technical And Scientific Forums
tutorial Tutorial
written 9.6 years ago by 11k
15
votes
5
replies
11k
views
6 follow
Tutorial: Easy way to do GO enrichment in R
enrichr gene RNA-Seq R Tutorial
updated 8 months ago by 84k • written 5.2 years ago by ▴ 740
1
vote
1
reply
1.1k
views
Tutorial: Generating count matrix for STAR counts in GDC v32.0 for RNA-Seq
TCGA Counts v32.0 Biolinks GDC STAR
updated 7 weeks ago by • 0 • written 9 months ago by ★ 1.7k
37
votes
8
replies
8.6k
views
10 follow
Tutorial: Methylation Analysis Tutorial in R_part1
cancer Tutorial R methylation
updated 8 weeks ago by ★ 1.1k • written 2.3 years ago by 2.8k
3
votes
2
replies
1.1k
views
Tutorial: Running fastq_screen on your data
fastqscreen
10 months ago by rohitsatyam102 ▴ 690
7
votes
14
replies
1.8k
views
6 follow
Tutorial: Install required dependencies for GATK4 on remote server without root privilege
gatk
updated 3 months ago by • 0 • written 11 months ago by ▴ 30
74
votes
14
replies
13k
views
15 follow
Tutorial: List Of Bioinformatics Books
bioinformatics tutorial books Tutorial
updated 4 months ago by 37k • written 9.7 years ago by 9.5k
24
votes
13
replies
5.7k
views
9 follow
Tutorial: How to get FASTQ reads from the Short Read Archive (SRA)
fastq sra
updated 12 months ago by ★ 1.1k • written 15 months ago by 96k
3
votes
13
replies
8.8k
views
Tutorial: Merging multiple vcf files into Single vcf file
vcf merge bcftools Tutorial
written 4.0 years ago by ▴ 140
13
votes
9
replies
3.5k
views
Tutorial: TCGA transcriptome data to R (DESeq2)
TCGA GDC DESeq2
updated 7 months ago by ▴ 40 • written 14 months ago by ★ 1.1k
2
votes
0
replies
900
views
Tutorial: Free Book : Computational Biology of a cell signalling pathway using R
cell Biology R Computational signalling
13 months ago by sinha.shriprakash ▴ 20
0
votes
0
replies
7.7k
views
Tutorial: Using PatMatch to search for nucleic and protein sequence patterns and integrate the results with Python/Jupyter for downstream analysis
Jupyter Python pattern
12 months ago by Wayne ★ 1.5k
12
votes
4
replies
4.2k
views
Tutorial: *FREE course* Bioinformatics for Biologists: An Introduction to Linux, Bash Scripting, and R
Tutorial linux bioinformatics R
updated 14 months ago by • 0 • written 24 months ago by ▴ 120
24
votes
10
replies
55k
views
9 follow
Tutorial: Installing an updated R version (>=4.0) using conda
Tutorial error software R
updated 8 months ago by • 0 • written 22 months ago by ★ 1.3k
6
votes
2
replies
2.1k
views
Tutorial: Unsupervised clustering on gene expression data
gene RNA-seq expression clustering
4 months ago by Hamid Ghaedi 2.8k
41
votes
6
replies
17k
views
Tutorial: Greatly speed up conda by using mamba
software
updated 12 months ago by ▴ 40 • written 22 months ago by 10k
142
votes
68
replies
42k
views
18 follow
Tutorial: Network plot from expression data in R using igraph
R Tutorial microarray RNA-Seq network
updated 7 months ago by • 0 • written 5.2 years ago by 84k
15
votes
2
replies
1.3k
views
Tutorial: Germline variant calling pipeline using Snakemake
snakemake GATK germline_variant_calling
updated 3 months ago by ▴ 790 • written 16 months ago by ▴ 270
194
votes
44
replies
67k
views
33 follow
Tutorial: Analysing Microarray Data In Bioconductor
microarray-analysis bioconductor
updated 22 days ago by 37k • written 10.3 years ago by 20k
6
votes
2
replies
963
views
Tutorial: GSE28955 - Agilent-016436 Human miRNA Microarray 1.0
limma GPL6955 Microarray miRNA Agilent
17 months ago by Kevin Blighe 84k
0
votes
0
replies
838
views
Tutorial: Alignment-free RNA-seq Differential Gene Expression Analysis with Kallisto & Sleuth
dge kallisto rnaseq sleuth
17 months ago by mo • 0
2
votes
0
replies
1.5k
views
Tutorial: Affymetrix HTA 2.0 id conversion
biomart HTA affymetrix Affymetrix 2.0
18 months ago by Kevin Blighe 84k
45
votes
2
replies
35k
views
Tutorial: Mapping Reads With Bwa And Bowtie
bowtie bwa tutorial Tutorial
updated 18 months ago by • 0 • written 10.8 years ago by ▴ 540
92
votes
105
replies
32k
views
25 follow
Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
Tutorial 1000 genomes PCA PLINK
updated 11 hours ago by ▴ 40 • written 4.4 years ago by 84k
0
votes
0
replies
699
views
Tutorial: Event & tutorial: open software tools and AI for improving bioimaging (SLURM, containerisation)
containerisation bioimaging SLURM health
19 months ago by Erin Haskell | ELIXIR ▴ 470
353 results • Page 1 of 8
Recent Votes
A: Coursera Genomic Data Science courses
Coursera Genomic Data Science courses
The Biostar Herald for Monday, January 30, 2023
A: Python Cigar String - Finding Indels Break Points Positions
Comment: Strand-specific in HT-Seq
Comment: Calculating PRS in a large cohort
C: BWA MEM vs BOWTIE2 , which is best?
Recent Locations • All
Bologna, 1 minute ago
Cambridge, MA, 1 minute ago
United States, 2 minutes ago
United States, 3 minutes ago
United States, 4 minutes ago
Brazil, 5 minutes ago
Czechia, 5 minutes ago
Recent Awards • All
Popular Question to tarek.mohamed ▴ 350
Popular Question to sviatoslav.kendall ▴ 840
Teacher to Gordon Smyth ★ 5.4k
Popular Question to jayeshkumarsundaram • 0
Popular Question to jterakita ▴ 20
Scholar to seidel 10k
Scholar to GenoMax 125k
Recent Replies
Answer: How to change every third line in a fastq library by Ram 37k
`sed` can do this: sed '3~4s/.+/+/' in.fastq > out.fastq #untested, test on the first ~40 lines before running on entire file
Answer: Protein protein interactions by Mensur Dlakic ★ 22k
What you want to do can be be done only on a case-by-case basis, as there is no database that contains information about interacting residu…
Comment: Strand-specific in HT-Seq by ibq.enriquepola • 0
thanks so much, I will try this tool.
Comment: Python Dictionary of Primer3-py Primer Designs by bhumm ▴ 10
@barslmn, thank you so much! This was exactly what I was looking for! For completeness (and for anyone else who may stumble across this po…
Comment: Calculating PRS in a large cohort by haasroni • 0
Thank you! Do you know if possible to give a score file (--score) that has chr and positions instead of SNP IDs?
Comment: Strand-specific in HT-Seq by barrypraveen ▴ 100
Depends on the library preparation, if your cDNA is reverse complement then it should be -s <reverse>.
Comment: Is there a method to group and summarize the `homer` `findMotifsGenome.pl` outpu by ATpoint 68k
Can you give an example of how the output should look like?
Answer: Is there a method to group and summarize the `homer` `findMotifsGenome.pl` outpu by Mensur Dlakic ★ 22k
Don't know if there is a specific tool for this, but using your eyes should be sufficient to match similar sequence logos. For example, `B…
Comment: Strand-specific in HT-Seq by GenoMax 125k
There are multiple threads about this issue on biostars but here is a tool that can be used without alignments: https://www.biostars.org/p/…
Comment: translate CDS to prot formatted with nt nubers by vvasta • 0
this is the format I am lookinf for ![enter image description here][1] [1]: /media/images/1d846c49-5646-4cf6-8a55-2897c1cd
Answer: POSSUM Bioinformatics Tool by Mensur Dlakic ★ 22k
The link to all UniRef databases: https://ftp.uniprot.org/pub/databases/uniprot/uniref/ When you select `uniref100`, the file you wan…
Comment: Where can I get the ICB datasets in this website? by GenoMax 125k
What is ICB therapies for those of us that do not know. The site you linked says `isb` something so is that the same as what you are lookin…
Answer: De novo motif in DNA sequences by Buffo ★ 2.0k
The [MEME][1] Suite can be a good start for you. [1]: https://meme-suite.org/meme/
Comment: How to Calulate Allele Frequency from a VCF File? by Jeremy Leipzig 21k
Hmm i would expect some heteroplasmy to show up in AD or DP at some positions
Answer: KMP algorithm's time complexity by umang • 0
Not sure if this is the right forum to ask about KMP. Anyways you can read https://www.w3spot.com/2020/07/kmp-algorithm-explained-in-plain-…
Traffic: 2119 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6