Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this year
all time
today
this week
this month
this year
460 results • Page
2 of 10
Sort: Rank
Rank
Views
Votes
Replies
3
votes
3
replies
922
views
Forum:
Importance of Data Structures for Bioinformatics?
data-structures
updated 7 months ago by
Ram
43k • written 7 months ago by
S
• 0
19
votes
14
replies
2.1k
views
Forum:
What is the amount of sequencing data produced annually?
data
research
sequencing
updated 7 months ago by
Jeremy Leipzig
22k • written 7 months ago by
vincenthus
▴ 70
19
votes
10
replies
1.5k
views
Forum:
Pain points using commercial clouds
gpt
tinybio
updated 7 months ago by
vincenthus
▴ 70 • written 8 months ago by
Sasha
▴ 840
9
votes
6
replies
1.9k
views
6 follow
Forum:
GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl
bug
GTF
updated 7 months ago by
ATpoint
82k • written 17 months ago by
dlaehnemann
▴ 30
3
votes
2
replies
629
views
Forum:
How to contribute to the next edition of Biostars Handbook
handbook
updated 7 months ago by
Ram
43k • written 7 months ago by
Fouad
▴ 20
3
votes
6
replies
1.5k
views
6 follow
Forum:
Is Bioinformatics a Professional Degree?
career
degree
8 months ago by
anasjamshed
▴ 120
2
votes
5
replies
951
views
6 follow
Forum:
Biostar as a next generation version
meta
mobile-app
updated 6 months ago by
Ram
43k • written 8 months ago by
rj.rezwan
• 0
2
votes
9
replies
1.2k
views
Forum:
open source projects looking for contributors
open-source
updated 7 months ago by
vincenthus
▴ 70 • written 8 months ago by
claudiofr
▴ 20
0
votes
0
replies
539
views
Forum:
Recruiters: what do you expect on a junior bioinformatician?
career
skills
updated 8 months ago by
Ram
43k • written 8 months ago by
gallardodiazmiriam
▴ 20
3
votes
4
replies
1.4k
views
Forum:
Discussion: Uploading terabytes of data to NCBI SRA
NCBI
WGS
archiving
servers
remote
updated 8 months ago by
GenoMax
141k • written 8 months ago by
James Reeve
▴ 130
0
votes
0
replies
573
views
Forum:
I have a Master's and little experience in Bioinformatics - what would be the next best step?
career
updated 8 months ago by
Ram
43k • written 8 months ago by
RM123
▴ 10
1
vote
3
replies
788
views
Forum:
Spaceranger missing spatial coordinates [Discussion]
Visium
updated 8 months ago by
GenoMax
141k • written 8 months ago by
morovatunc
▴ 550
11
votes
8
replies
1.4k
views
6 follow
Forum:
How to write a review article in bioinformatics
article
review
updated 8 months ago by
Ram
43k • written 8 months ago by
joey
▴ 10
364
votes
58
replies
69k
views
44 follow
Forum:
Recommend Your Favorite Bioinformatics Books
education
books
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Istvan Albert
100k
1
vote
2
replies
18k
views
Forum:
Would you rather analyze a dataset with a strong, non-collinear batch effect, or a weak, collinear batch effect.
collinear
latent
batch-effect
variable
GLM
9 months ago by
LauferVA
4.2k
0
votes
3
replies
3.8k
views
10 follow
Forum:
Discussion question: Cutoff for SNP phylogeny
Phylogenetics
SNP
written 17 months ago by
SushiRoll
▴ 120
2
votes
3
replies
791
views
Forum:
Purely analytic or in silico manuscripts that have significantly improved biological understanding
dry-lab
updated 9 months ago by
GenoMax
141k • written 9 months ago by
LauferVA
4.2k
0
votes
2
replies
1.3k
views
Forum:
[Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 10 months ago by
Asaf
10k • written 10 months ago by
Davide
• 0
33
votes
23
replies
4.2k
views
8 follow
Forum:
Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF
file-format
genomics
updated 10 months ago by
Jeremy Leipzig
22k • written 10 months ago by
LauferVA
4.2k
7
votes
8
replies
1.9k
views
Forum:
Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind
career
10 months ago by
K
• 0
2
votes
3
replies
866
views
Forum:
Mapping a predicted sequence to a genome
predicted
map
alignment
sequence
updated 10 months ago by
Mensur Dlakic
★ 27k • written 10 months ago by
Andy
• 0
0
votes
0
replies
444
views
Forum:
Recommendation sought for differential exon usage of a single gene
splicing
differential-exon-usage
updated 10 months ago by
Ram
43k • written 10 months ago by
nick_b55
▴ 10
7
votes
4
replies
1.1k
views
Forum:
[Meta] Use of AI
AI
Artificial-Intelligence
meta
ChatGPT
updated 10 months ago by
Ram
43k • written 11 months ago by
LauferVA
4.2k
2
votes
2
replies
603
views
Forum:
Colleges
Colleges
india
universities
updated 11 months ago by
Ram
43k • written 11 months ago by
mahimanepalli36
• 0
19
votes
15
replies
2.0k
views
6 follow
Forum:
Cross out line in Biostars
meta
updated 11 months ago by
Ram
43k • written 6.0 years ago by
Bastien Hervé
5.3k
121
votes
33
replies
39k
views
24 follow
Forum:
Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 11 months ago by
carlopecoraro2
★ 2.5k • written 10.7 years ago by
Eric Normandeau
11k
103
votes
42
replies
31k
views
34 follow
Forum:
List of cloud genomics companies
cloud-genomics
updated 21 days ago by
Jeremy Leipzig
22k • written 10.5 years ago by
14134125465346445
★ 3.6k
26
votes
12
replies
7.5k
views
6 follow
Forum:
Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 11 months ago by
zyan2005
▴ 10 • written 10.5 years ago by
johnblue81
▴ 50
0
votes
2
replies
774
views
Forum:
How to start in bioinformatics?
career
updated 11 months ago by
Ram
43k • written 12 months ago by
caffrey
• 0
4
votes
5
replies
1.4k
views
Forum:
I'm looking for a mentor in Bioinformatics
mentor
teaching
updated 11 weeks ago by
alva
• 0 • written 12 months ago by
cwaingartentrabajo
• 0
10
votes
15
replies
2.1k
views
Forum:
How should reference genome fasta files be distributed by UCSC?
reference-genome
fasta
freeze
ucsc-genome-browser
updated 11 months ago by
Jeremy Leipzig
22k • written 14 months ago by
Maximilian Haeussler
★ 1.6k
5
votes
4
replies
1.3k
views
Forum:
Best BAM viewer in 2022
sam
bam
updated 10 months ago by
Ram
43k • written 17 months ago by
Cornelius
▴ 70
1.2k
votes
206
replies
59k
views
108 follow
Forum:
What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 11 months ago by
Raony Guimarães
★ 1.4k • written 13.1 years ago by
Jeremy Leipzig
22k
15
votes
13
replies
4.1k
views
8 follow
Forum:
Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice
industry
phd
updated 3 months ago by
benformatics
3.9k • written 17 months ago by
buhbs
▴ 30
4
votes
5
replies
1.4k
views
6 follow
Forum:
Which Bioinformatics Master's degree is better?
career
masters
updated 11 months ago by
Ram
43k • written 18 months ago by
stelakarayani7
• 0
3
votes
6
replies
1.1k
views
Forum:
How to become a moderator and other ways of contributing to Biostars
meta
biostars
updated 11 months ago by
Ram
43k • written 19 months ago by
iraun
6.2k
3
votes
2
replies
849
views
Forum:
From protein-protein interaction networks to..
workflow
computational
knowledge
limitations
updated 10 months ago by
Ram
43k • written 22 months ago by
BioInfoBeginner
▴ 50
15
votes
11
replies
4.7k
views
9 follow
Forum:
Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA
DAVID
enrichment-analysis
-geneontology
updated 11 months ago by
Ram
43k • written 2.1 years ago by
mark.ziemann
★ 1.9k
0
votes
3
replies
928
views
Forum:
Project Topics on bioinformatic
Data-analysis
Coding
Molecular-biology
updated 11 months ago by
Ram
43k • written 2.2 years ago by
Abdullahi
• 0
3
votes
1
reply
918
views
Forum:
How to download multiple .gz files from Ensembl Protists database
wget
protist
ensembl
updated 10 weeks ago by
BioinfGuru
★ 1.7k • written 2.2 years ago by
rohitsatyam102
▴ 850
17
votes
14
replies
3.3k
views
Forum:
Asking for feedback on a Python library for computing alignments
alignment
Python
updated 10 months ago by
Alexander
▴ 220 • written 2.3 years ago by
bernhard.liebl
▴ 60
0
votes
1
reply
772
views
Forum:
What are the most important papers/methods in Genomics/Bioinformatics of 2021?
publications
updated 10 months ago by
Ram
43k • written 2.3 years ago by
carlopecoraro2
★ 2.5k
12
votes
7
replies
7.1k
views
Forum:
Differences between SMART-seq2, SMART-seq3, and 10x
cell
smartseq
UMIs
single
10x
updated 5 weeks ago by
dsull
★ 5.9k • written 2.6 years ago by
hamarillo
▴ 70
0
votes
0
replies
519
views
Forum:
Poll about a structured description of a tool, a pipeline
survey
pipeline
updated 10 months ago by
Ram
43k • written 2.8 years ago by
Anastasiya M
• 0
7
votes
20
replies
2.1k
views
Forum:
NGS RNA-Seq Analysis Pipeline Tophat vs STAR
STAR
RNA-Seq
TopHat
updated 11 months ago by
Ram
43k • written 3.3 years ago by
mikefeixu
▴ 10
11
votes
9
replies
2.4k
views
7 follow
Forum:
Feature Selection and Dimensionality Reduction in 10X scRNA-seq data
software-error
pca
scRNA-seq
updated 11 months ago by
Ram
43k • written 4.3 years ago by
ATpoint
82k
0
votes
0
replies
700
views
Forum:
where to get the site mutation rate of SARS-CoV-2?
sequence
sequencing
updated 11 months ago by
Ram
43k • written 3.4 years ago by
2001linana
▴ 40
6
votes
5
replies
1.7k
views
Forum:
Very generally speaking, what are valid criteria to decide that a sample is an outlier?
outliers
updated 11 months ago by
Ram
43k • written 3.3 years ago by
Aspire
▴ 300
7
votes
4
replies
1.2k
views
Forum:
Specific question on torturing the data until it confesses
ipa
gene-set-enrichment
statistics
updated 11 months ago by
Ram
43k • written 3.3 years ago by
Aspire
▴ 300
7
votes
3
replies
1.3k
views
Forum:
Is it still recommended to avoid macOS Big Sur?
mac
updated 11 months ago by
Ram
43k • written 3.3 years ago by
jrleary
▴ 210
460 results • Page
2 of 10
Recent Votes
Answer: Extract protein sequence
Answer: Extract protein sequence
C: How do I ask a question on Biostars?
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
Comment: How to calculate identity percentage between proteins contained in a FASTA file?
Comment: How to calculate identity percentage between proteins contained in a FASTA file?
Recent Locations •
All
Colombia/Bogotá,
1 minute ago
France,
2 minutes ago
Seattle, WA USA,
4 minutes ago
United States,
4 minutes ago
Canada,
5 minutes ago
Canada,
6 minutes ago
United States,
8 minutes ago
Recent Awards •
All
Scholar
to
Gordon Smyth
★ 7.1k
Popular Question
to
elcortegano
▴ 200
Scholar
to
christopher medway
▴ 450
Popular Question
to
cwwong13
▴ 40
Popular Question
to
v.berriosfarias
▴ 140
Popular Question
to
scarey
• 0
Scholar
to
e.r.zakiev
▴ 200
Recent Replies
Answer: Post-imputation plot
by
LChart
3.9k
The anti-diagonal band does suggest some fraction of genotypes are strand-flipped - probably G/C or A/T variants.
Comment: Differential Accessibility
by
Ram
43k
Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the cod…
Comment: Extract protein sequence
by
anna
▴ 20
Thank you! I need this for eukaryotic organism and known protein sequences, but I guess seqkit would work well!
Comment: Landmark gene selection in L1000.
by
GenoMax
141k
Paper referred to in question: https://pubmed.ncbi.nlm.nih.gov/29195078/ > so I want to understand how you reduced the 12063 genes to 978…
Comment: What should I consider as FASTA for dataset?
by
Nafi
• 0
Protein attribute prediction
Comment: Batch effects : ComBat or removebatcheffects (limma package) ?
by
cwwong13
▴ 40
@kevin May I know whether your comments and edits were mainly based on the fact that "Previously, [crazy] people had been using the origina…
Comment: Programmatically retrieving positions of protein active site residues
by
Wayne
★ 2.0k
Wow, I was shocked at this AI answer that looks to be a good start for using UniProt. Sharing it in case it is useful. (It will work in ses…
Comment: NGS forensics: how to know if data is fabricated
by
noodle
▴ 570
> Can you clarify what you mean by "100% of reads pass cutadapt, even > though 70% of reads contain adapters and get trimmed. The header o…
Comment: Software to separate reads from different individuals
by
GenoMax
141k
If you have independent information available (e.g. genotype data for both individuals) then you *may* be able to assign reads based on the…
Answer: Extract protein sequence
by
Matthias Zepper
4.5k
You didn't mention what kind of organism you are working with and what kind of protein you are looking for? If it happens to be a microbia…
Comment: How to use limma to find differentially expressed genes in response to a continu
by
pairedttest
▴ 10
Thank you Gordon for your expertise. One question that I have now that I have a list of DE genes is how to interpret logFC of this continuo…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt
by
salias
• 0
Yes I plan to use QIIME2, but I'm Cutadapting outside QIIME so its easier to MultiQC without importing/unzipping QZAs (and QIIME2 importing…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt
by
GenoMax
141k
> 3' adapters were removed aprox. 90 times each one, so there sohuld not be read-through at all here Then you have data that has poor Q sc…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt
by
salias
• 0
Following your advice, I checked the primer and adapters sequences and edited the question accordingly
Comment: How should I make kallisto indexes?
by
dsull
★ 5.9k
We can't phase them out per se, because ``kallisto index`` is still the engine responsible for creating the index under the hood (and there…
Traffic: 2720 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6