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1,000 results • Page 4 of 20
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6
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7
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1.1k
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Forum: Generic avatars, not gravatars?
technical avatar
2.1 years ago by Michael 54k
5
votes
0
replies
2.9k
views
Forum: Correct method of Merging/Integrating multiple single cell dataset using Seurat
seurat scrnaseq
2.1 years ago by rohitsatyam102 ▴ 860
0
votes
0
replies
546
views
Forum: Phylogenomics in the presence of gene flow
hybridisation introgression gene-flow Phylogenomics
2.2 years ago by jeronimocid93 • 0
2
votes
2
replies
1.0k
views
Forum: Bioinformatician Jobs: Remote Flexible is possible?
remote-jobs bioinformatician
updated 23 months ago by 43k • written 2.2 years ago by ▴ 20
15
votes
11
replies
4.7k
views
9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA DAVID enrichment-analysis -geneontology
updated 12 months ago by 43k • written 2.2 years ago by ★ 1.9k
0
votes
0
replies
483
views
Forum: CIRCexplorer2 - Getting Count Matrix
CIRCexplorer2 counts circRNA
2.2 years ago by akamonto • 0
3
votes
5
replies
1.0k
views
Forum: 1000 genomes data?
DNA 1000genomes variation
updated 2.2 years ago by 43k • written 2.2 years ago by ▴ 520
0
votes
0
replies
531
views
Forum: What kind of analysis automation or pipeline is most needed in genomic data analysis right now?
dna genome analysis programming statistics
updated 2.2 years ago by 82k • written 2.2 years ago by • 0
29
votes
10
replies
6.5k
views
10 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz python visualisation
updated 14 months ago by 43k • written 6.2 years ago by 21k
3
votes
6
replies
2.2k
views
Forum: A Css For Small Screen Devices?
meta
updated 15 months ago by 43k • written 12.1 years ago by ★ 3.6k
12
votes
6
replies
2.9k
views
Forum: M.S. Bioinformatics and Computational Biology: Will I be able to find a job after graduation? I'm worried...
career Masters Graduation
updated 23 months ago by 43k • written 2.2 years ago by ▴ 20
0
votes
3
replies
939
views
Forum: Project Topics on bioinformatic
Data-analysis Coding Molecular-biology
updated 12 months ago by 43k • written 2.2 years ago by • 0
0
votes
4
replies
1.3k
views
Forum: Declining multithreading Diamond performance on decent dual AMD Epyc 7643 server
diamond performance EPYC 7643 multithreading AMD poor
updated 2.2 years ago by 142k • written 2.2 years ago by ▴ 10
3
votes
1
reply
933
views
Forum: How to download multiple .gz files from Ensembl Protists database
wget protist ensembl
updated 12 weeks ago by ★ 1.7k • written 2.2 years ago by ▴ 860
3
votes
4
replies
2.6k
views
Forum: Bioinformatics Research Topics/Areas that Everyone should take a look / Current Trends
research-area postgraduates
updated 15 months ago by 43k • written 2.3 years ago by ▴ 10
1
vote
0
replies
560
views
Forum: Continue exploring Bioinformatics and improving Bioinformatics Skills
postgraduate bioinformatics-skills
updated 15 months ago by 43k • written 2.3 years ago by ▴ 10
0
votes
1
reply
780
views
Forum: ensemble VEP server is down
VEP ensemble
updated 2.3 years ago by 82k • written 2.3 years ago by • 0
15
votes
10
replies
2.0k
views
7 follow
Forum: Tips and tricks to improve data visualization in bioinformatics
visualization ggplot2 plot
updated 2.3 years ago by ★ 27k • written 2.3 years ago by ★ 2.9k
3
votes
8
replies
1.6k
views
Forum: What are the pain points of using Genomics on the cloud today?
datasharing pipelines workspaces cloud genomics
updated 2.3 years ago by 22k • written 2.3 years ago by ▴ 520
0
votes
0
replies
562
views
Forum: UniProt survey about programmatic access
documentation api survey uniprot
updated 2.3 years ago by 161k • written 2.3 years ago by ★ 2.4k
4
votes
9
replies
3.1k
views
Forum: 100% variance explained on one PC in DESeq2 PCA?
RNA-Seq DESeq2
2.3 years ago by melatoninixo ▴ 10
17
votes
14
replies
3.4k
views
Forum: Asking for feedback on a Python library for computing alignments
alignment Python
updated 11 months ago by ▴ 220 • written 2.3 years ago by ▴ 60
0
votes
1
reply
649
views
Forum: Statistical methods Books Recommendation
Books Recommendation
updated 2.3 years ago by 82k • written 2.3 years ago by ▴ 110
0
votes
0
replies
477
views
Forum: Is there any limitation for number of samples in AUC analysis ?
curves ROC
2.3 years ago by sabaghianamir70 ▴ 70
6
votes
5
replies
4.0k
views
6 follow
Forum: How is the job outlook in 2020 ?
career outlook
updated 23 months ago by 43k • written 5.9 years ago by • 0
6
votes
5
replies
1.2k
views
6 follow
Forum: Usability of depiction of individual reads in genome browser visualization
visualization browser genome
updated 2.3 years ago by 100k • written 2.3 years ago by ▴ 600
4
votes
7
replies
1.8k
views
Forum: Data Base management system for data lake: Cassandra vs MongoDB vs Apache HBase
HBase Cassandra MongoDB Data-Lake
updated 2.3 years ago by ★ 3.2k • written 2.3 years ago by ▴ 120
9
votes
8
replies
5.2k
views
9 follow
Forum: insert figure and code in the post of Biostars?
meta biostars
updated 14 months ago by 43k • written 9.0 years ago by ★ 2.2k
7
votes
2
replies
1.6k
views
Forum: What are the most influential Bioinformatics/Computational Biology papers/methods/discoveries of 2021?
snp papers survey
updated 15 months ago by 43k • written 2.4 years ago by ★ 1.4k
0
votes
1
reply
778
views
Forum: What are the most important papers/methods in Genomics/Bioinformatics of 2021?
publications
updated 11 months ago by 43k • written 2.4 years ago by ★ 2.5k
24
votes
11
replies
4.3k
views
7 follow
Forum: In 2022 is Perl and Ruby programming languages still useful for bioinformatics?
ruby perl
updated 2.4 years ago by 8.6k • written 2.4 years ago by • 0
0
votes
4
replies
873
views
Forum: Terms (like atlas, map, and archive) on database description
database
2.4 years ago by bioinformaticsBoy ▴ 10
2
votes
2
replies
807
views
Forum: How much are companies willing to pay for microbiome data?
NGS metagenomics microbiome
2.4 years ago by maa4618 • 0
19
votes
1
reply
4.5k
views
Forum: Best programming language for bioinformatics - R Language
programming R
updated 14 months ago by 82k • written 3.2 years ago by ▴ 420
6
votes
7
replies
1.4k
views
Forum: How to change my email address
meta biostars
updated 2.4 years ago by • 0 • written 3.2 years ago by ▴ 50
9
votes
11
replies
3.4k
views
6 follow
Forum: 2021: state and usage of compressed file standards better than BAM and FASTQ
bam compression fastq
updated 22 months ago by ▴ 120 • written 3.1 years ago by ★ 5.3k
10
votes
3
replies
4.7k
views
Forum: Trimming tools - your experience please?
trimming
updated 2.5 years ago by 19k • written 2.5 years ago by ▴ 20
8
votes
9
replies
1.8k
views
Forum: Most useful public genomic/genetic databases/tools/applications
public-data genomics Genetics open-access
updated 15 months ago by 43k • written 2.5 years ago by ▴ 520
74
votes
14
replies
30k
views
12 follow
Forum: Bioinformatics Consulting Thoughts
consulting
updated 23 months ago by 43k • written 13.9 years ago by 4.5k
6
votes
3
replies
1.2k
views
Forum: Computational Biology Conference
biology computational science research conference
updated 2.5 years ago by 47k • written 2.5 years ago by ▴ 790
0
votes
1
reply
741
views
Forum: UK supercomputer Cambridge-1 vs SDSC vs TACC
SDSC TACC HPC Cambridge-1
updated 2.5 years ago by 142k • written 2.5 years ago by ★ 9.4k
0
votes
1
reply
727
views
Forum: Official/centralized/designated genetic/biological knowledge graph?
knowledge graph
updated 2.5 years ago by 8.7k • written 2.5 years ago by • 0
0
votes
0
replies
547
views
Forum: Targeted sequencing and phylogenetics
SC sequencing exome gene_panel
updated 15 months ago by 43k • written 2.5 years ago by • 0
2
votes
7
replies
3.1k
views
Forum: M1 Pro/Max and future
Max M1 M2 Pro Mac
updated 2.5 years ago by 142k • written 2.5 years ago by ▴ 20
21
votes
8
replies
7.6k
views
Forum: Is there ever a good reason to use a log transformation instead of Box-Cox?
data skew transformation power
updated 2.5 years ago by 100k • written 2.5 years ago by ★ 27k
6
votes
2
replies
796
views
Forum: Biology undergraduate looking for mentor
computational-biology Biology mentor Toronto
updated 2.5 years ago by 43k • written 2.5 years ago by • 0
1
vote
7
replies
1.4k
views
Forum: Does it matter where I get my PhD? I am currently a masters student.
advice PhD Masters
2.5 years ago by nickroseae ▴ 10
16
votes
7
replies
2.0k
views
Forum: Will a user #100000 get Tesla Model 3?
milestone
updated 2.6 years ago by 100k • written 2.6 years ago by ★ 27k
2
votes
8
replies
1.9k
views
Forum: Non biology & computer professional interested in bioinformatics
computer-science machine-learning
updated 15 months ago by 43k • written 2.6 years ago by • 0
0
votes
0
replies
649
views
Forum: PhD Bioinformatics Remote positions
PhD
updated 23 months ago by 43k • written 2.6 years ago by ▴ 30
1,000 results • Page 4 of 20
Recent Votes
Answer: --normalizeUsing RPGC
Answer: Details on salmon index
Answer: Details on salmon index
Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
A: How count reads
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Popular Question to carlopecoraro2 ★ 2.5k
Scholar to GenoMax 142k
Popular Question to ben@f ▴ 20
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Recent Replies
Comment: About runing Pilon on individual chromosomes when polish draft genome assembly by sansan_96 ▴ 90
Hello, What approach could you recommend for a large genome (3Gb) with about 10k scaffolds? I'm having problems with RAM when processing t…
Comment: Single-cell ambient RNA correction: SoupX vs decontX contamination fraction by e.r.zakiev ▴ 210
Very good question and analysis. I personally only tried SoupX so can't weigh in on the comparison. This might be not really the issue here…
Comment: Is there any way to modify this pie chart ? by marco.barr ▴ 120
Try following the same logic as the guide which adds the labels about halfway through each pie slice value. Check column's name in script b…
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
sorry for that, this is first time i use it.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
thank sir, i will check it again
Comment: In one PCA plot, can I calculate the percentage of different factors that contri by diqixiaoyaoer ▴ 10
Ok, I will response to you here as soon as possible.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by GenoMax 142k
How much memory do you have available? For `nt` database you are going to need 30-40G minimum. You may simply be running out of memory.
Comment: Can 5' and 3' scRNAseq be processed with the same pipeline? by ev97 ▴ 20
Noted! Thanks very much for your help!
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
i'm using linux. I was use 3 file.fasta to debug and it is nucleotide file, and my blast -h still work > (/data/quyho/tools/mgs2amr_tool…
Answer: Details on salmon index by Rob 6.5k
Hi Lorenzo, Thanks for your question. First, I'd like to clarify that several substantial updates have been made to salmon since its …
Comment: Can 5' and 3' scRNAseq be processed with the same pipeline? by yura.grabovska ▴ 90
sc/snRNASeq tends to have differences in things like mitochondrial genes etc, which you can account for using tools like SCTransform but in…
Comment: Why does assigning genes with biomart give me different values than using a tran by bioinfo ▴ 150
Thank you! I ended up using the transcripts_to_genes instead of biomart.
Comment: How can I calculate the OS of each patient? by ATpoint 82k
Please be specific. Which TCGA subset, what did you try? Show code.
Answer: mitochondrial genome assembly pipeline by shelkmike ★ 1.2k
A good tool for mitochondrial genome assembly is GetOrganelle (https://github.com/Kinggerm/GetOrganelle)
Comment: getting exon coordinates by Ram 43k
Please do not use `bioinformatics` as a tag unless your post in about the field of bioinformatics itself.
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