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1,000 results • Page
2 of 20
Sort: Votes
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Views
Votes
Replies
70
votes
19
replies
5.6k
views
13 follow
Forum:
Thrown Into A Bioinformatics Position
computational-analysis
updated 21 months ago by
Ram
43k • written 8.6 years ago by
System
▴ 170
69
votes
39
replies
4.6k
views
14 follow
Forum:
Preparation for Bioinformatics.SE closing
meta
biostars
updated 11 months ago by
Ram
43k • written 6.9 years ago by
John
13k
68
votes
48
replies
8.8k
views
16 follow
Forum:
Stranger Things: unexpected limitations of popular tools
samtools
hisat2
updated 11 months ago by
Ram
43k • written 6.8 years ago by
Istvan Albert
100k
68
votes
22
replies
7.9k
views
16 follow
Forum:
Learning Python: list of resources
python
updated 12 months ago by
Ram
43k • written 7.5 years ago by
dago
★ 2.8k
67
votes
21
replies
6.1k
views
8 follow
Forum:
Meta: Markdown in Biostars (now enabled)
meta
13 months ago by
Ram
43k
67
votes
40
replies
9.7k
views
12 follow
Forum:
I want to re-open the old debate: python or perl ?
perl
python
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
Gabriel R.
★ 2.9k
66
votes
21
replies
6.8k
views
18 follow
Forum:
Is there anyone who was a pure biologist?
next-gen
updated 14 months ago by
Ram
43k • written 10.0 years ago by
Chong Tang
▴ 100
66
votes
29
replies
16k
views
15 follow
Forum:
Fundamentals Of Designing Biological Databases?
database
updated 14 months ago by
Ram
43k • written 13.5 years ago by
anon1234z
▴ 130
65
votes
57
replies
8.3k
views
12 follow
Forum:
Bioinformatics Mobile App
android
genome
iphone
mutations
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
aeinsights
▴ 20
65
votes
26
replies
19k
views
13 follow
Forum:
Macosx For Bioinformatics?
linux
updated 14 months ago by
Ram
43k • written 10.4 years ago by
Eric Normandeau
11k
65
votes
27
replies
7.5k
views
14 follow
Forum:
What is the reason for most software errors in Bioinformatics according to you?
software-error
blast
sequencing
SNP
R
updated 13 months ago by
Ram
43k • written 8.1 years ago by
harne.priyanka
▴ 110
64
votes
8
replies
8.3k
views
7 follow
Forum:
Isaac Asimov Accurately Predicts Woes Of Bioinformatician
bioinformatician
updated 14 months ago by
Ram
43k • written 11.0 years ago by
Obi Griffith
20k
64
votes
24
replies
3.0k
views
12 follow
Forum:
How much I must feel useless?
machine-learning
Programming
statistics
updated 11 months ago by
Ram
43k • written 5.6 years ago by
Molecular_genetics
▴ 80
63
votes
11
replies
15k
views
9 follow
Forum:
Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
programming
updated 14 months ago by
Ram
43k • written 10.8 years ago by
Malachi Griffith
19k
63
votes
9
replies
3.9k
views
Forum:
Should The "Post Closing" Option Exist? Vote Now!
meta
updated 14 months ago by
Ram
43k • written 10.9 years ago by
Istvan Albert
100k
63
votes
28
replies
4.0k
views
11 follow
Forum:
Bioinformatics analyses & errors: need for better post-publication tools?
next-gen
RNA-Seq
updated 12 months ago by
Ram
43k • written 8.0 years ago by
ablanchetcohen
★ 1.2k
61
votes
70
replies
14k
views
21 follow
Forum:
Biostar 2.0 released
meta
biostars
updated 14 months ago by
Ram
43k • written 10.0 years ago by
Istvan Albert
100k
61
votes
16
replies
8.1k
views
14 follow
Forum:
Rust or C++, what to learn after Go for high-performance bioinformatics tools?
library
updated 15 months ago by
Samuel Lampa
★ 1.3k • written 3.5 years ago by
shenwei356
8.4k
60
votes
25
replies
5.5k
views
8 follow
Forum:
Am I crazy, or are most published RNA-seq studies vastly underpowered?
sample-size
statistical-power
RNA-Seq
updated 10 months ago by
Ram
43k • written 3.7 years ago by
telroyjatter
▴ 230
60
votes
28
replies
8.3k
views
27 follow
Forum:
Jim Robinson of the Integrative Genomics Viewer (IGV) uses this
uses-this
updated 13 months ago by
Ram
43k • written 9.6 years ago by
Istvan Albert
100k
60
votes
14
replies
12k
views
16 follow
Forum:
Interesting bioinformatics blogs (2017 edition)
blogs
updated 14 months ago by
Ram
43k • written 7.1 years ago by
WouterDeCoster
47k
57
votes
43
replies
16k
views
8 follow
Forum:
Best RNA-Seq aligner: A comparison of mapping tools
NGS
alignment
genome
RNA-Seq
sequence
updated 13 months ago by
Ram
43k • written 5.3 years ago by
David Langenberger
11k
57
votes
42
replies
6.6k
views
12 follow
Forum:
Why is academic software hard to install?
software-installation
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
lh3
33k
57
votes
15
replies
6.2k
views
9 follow
Forum:
Good practices while dealing with very large datasets
Big-Data
Programming
updated 11 months ago by
Ram
43k • written 7.0 years ago by
VHahaut
★ 1.2k
57
votes
9
replies
5.7k
views
14 follow
Forum:
Handbooks for Bioinformatics Ninjas
gallery
updated 12 months ago by
Ram
43k • written 8.0 years ago by
Shicheng Guo
★ 9.4k
57
votes
19
replies
28k
views
6 follow
Forum:
Attention: Bowtie2 And Multiple Hits
next-gen
bowtie
mapping
updated 14 months ago by
Ram
43k • written 11.5 years ago by
David Langenberger
11k
57
votes
15
replies
4.8k
views
9 follow
Forum:
Entice Biologists To Learn R
r
updated 14 months ago by
Ram
43k • written 12.6 years ago by
Madelaine Gogol
5.3k
56
votes
19
replies
4.1k
views
9 follow
Forum:
How to apply for a job
resume
cover-letter
application
CV
updated 11 months ago by
Ram
43k • written 6.8 years ago by
Emily
23k
55
votes
16
replies
6.0k
views
8 follow
Forum:
Mission Impossible: you have 1 minute to analyze the Ebola Genome
ebola
mission-impossible
updated 19 months ago by
Ram
43k • written 9.5 years ago by
Istvan Albert
100k
54
votes
16
replies
5.7k
views
13 follow
Forum:
The new era of bioinformatics: simple and fast tools, fewer and more informative data
kallisto
computational-cost
updated 15 months ago by
Ram
43k • written 9.0 years ago by
Istvan Albert
100k
54
votes
34
replies
4.9k
views
13 follow
Forum:
Should We Release Database Dumps Of All Questions On Biostar?
meta
biostars
updated 14 months ago by
Ram
43k • written 13.4 years ago by
Istvan Albert
100k
52
votes
8
replies
4.8k
views
8 follow
Forum:
What Is The Proper Way To Think About Reinventing The Wheel As A Bioinformatician?
software-development
updated 14 months ago by
Ram
43k • written 11.2 years ago by
KCC
★ 4.1k
52
votes
18
replies
6.3k
views
14 follow
Forum:
Do You Feel Good Or Bad About Putting Your Photo At Biostar?
meta
biostars
updated 14 months ago by
Ram
43k • written 10.6 years ago by
ugly.betty77
★ 1.1k
51
votes
16
replies
5.9k
views
11 follow
Forum:
What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2011?
papers
updated 14 months ago by
Ram
43k • written 12.4 years ago by
Farhat
★ 2.9k
51
votes
24
replies
9.1k
views
7 follow
Forum:
Bio-informatics salary distribution versus Java salary distribution in the UK
career
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
William
★ 5.3k
50
votes
8
replies
9.5k
views
6 follow
Forum:
Encode Commentary From Dan Graur
encode
updated 14 months ago by
Ram
43k • written 11.2 years ago by
Damian Kao
16k
50
votes
20
replies
6.0k
views
18 follow
Forum:
Explain bioinformatics to a 10 year old
bioinformatics
updated 13 months ago by
Ram
43k • written 8.1 years ago by
novice
★ 1.1k
50
votes
4
replies
9.3k
views
Forum:
How to add images to a Biostars post
how-to
14 months ago by
Ram
43k
50
votes
19
replies
4.9k
views
7 follow
Forum:
Proposal: Biostar Wants To Run Your Ads. Feedback Requested.
biostars
updated 14 months ago by
Ram
43k • written 11.2 years ago by
Istvan Albert
100k
49
votes
36
replies
8.6k
views
11 follow
Forum:
New features and bug fixes for Biostar to work on during Google Summer of Code
meta
biostars
gsoc
updated 14 months ago by
Ram
43k • written 10.0 years ago by
Paolo
▴ 110
49
votes
19
replies
7.3k
views
13 follow
Forum:
Why Are There No Proteomics Questions In Biostar?
proteomics
biostars
updated 14 months ago by
Ram
43k • written 13.5 years ago by
Jdnavarro
▴ 410
49
votes
27
replies
7.3k
views
10 follow
Forum:
Possible augmented reality tools for bioinformatics and current problems
visualization
3D
augmented-reality
updated 13 months ago by
Ram
43k • written 8.5 years ago by
Peter Leontev
▴ 90
49
votes
20
replies
2.0k
views
10 follow
Forum:
First experiences matter
first-time
tolerance
updated 3 months ago by
Michael Love
★ 2.6k • written 3 months ago by
Mensur Dlakic
★ 27k
48
votes
38
replies
17k
views
8 follow
Forum:
Eukaryotic Genome Annotation in 2016
software
genome
annotation
updated 13 months ago by
Ram
43k • written 8.1 years ago by
Eric Normandeau
11k
47
votes
14
replies
5.1k
views
Forum:
Was FASTA ever popular?
FASTA
alignment
updated 12 months ago by
Ram
43k • written 7.6 years ago by
John
13k
47
votes
24
replies
6.5k
views
15 follow
Forum:
What's fascinating about Bioinformatics for potential students?
career
msc
updated 16 months ago by
Ram
43k • written 6.5 years ago by
Michael
54k
47
votes
11
replies
4.1k
views
Forum:
What Operating System Are You Using For Bioinformatic Work?
linux
windows
updated 14 months ago by
Ram
43k • written 10.4 years ago by
Eric Normandeau
11k
47
votes
19
replies
14k
views
10 follow
Forum:
Is Software Development a key part of Bioinformatics?
Software-Development
updated 20 months ago by
Ram
43k • written 9.3 years ago by
xinuke
▴ 70
47
votes
30
replies
4.3k
views
10 follow
Forum:
Bioinformatics software distribution
software
updated 11 months ago by
Ram
43k • written 7.1 years ago by
Petr Ponomarenko
★ 2.8k
47
votes
7
replies
3.9k
views
7 follow
Forum:
Would There Be Interest In A 'Next-Gen Sequencing' Stackexchange Site?
meta
next-gen
updated 14 months ago by
Ram
43k • written 11.4 years ago by
14134125465346445
★ 3.6k
1,000 results • Page
2 of 20
Recent Votes
Answer: Extract protein sequence
Answer: Extract protein sequence
C: How do I ask a question on Biostars?
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
Comment: How to calculate identity percentage between proteins contained in a FASTA file?
Comment: How to calculate identity percentage between proteins contained in a FASTA file?
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Recent Replies
Answer: Post-imputation plot
by
LChart
3.9k
The anti-diagonal band does suggest some fraction of genotypes are strand-flipped - probably G/C or A/T variants.
Comment: Differential Accessibility
by
Ram
43k
Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the cod…
Comment: Extract protein sequence
by
anna
▴ 20
Thank you! I need this for eukaryotic organism and known protein sequences, but I guess seqkit would work well!
Comment: Landmark gene selection in L1000.
by
GenoMax
141k
Paper referred to in question: https://pubmed.ncbi.nlm.nih.gov/29195078/ > so I want to understand how you reduced the 12063 genes to 978…
Comment: What should I consider as FASTA for dataset?
by
Nafi
• 0
Protein attribute prediction
Comment: Batch effects : ComBat or removebatcheffects (limma package) ?
by
cwwong13
▴ 40
@kevin May I know whether your comments and edits were mainly based on the fact that "Previously, [crazy] people had been using the origina…
Comment: Programmatically retrieving positions of protein active site residues
by
Wayne
★ 2.0k
Wow, I was shocked at this AI answer that looks to be a good start for using UniProt. Sharing it in case it is useful. (It will work in ses…
Comment: NGS forensics: how to know if data is fabricated
by
noodle
▴ 570
> Can you clarify what you mean by "100% of reads pass cutadapt, even > though 70% of reads contain adapters and get trimmed. The header o…
Comment: Software to separate reads from different individuals
by
GenoMax
141k
If you have independent information available (e.g. genotype data for both individuals) then you *may* be able to assign reads based on the…
Answer: Extract protein sequence
by
Matthias Zepper
4.5k
You didn't mention what kind of organism you are working with and what kind of protein you are looking for? If it happens to be a microbia…
Comment: How to use limma to find differentially expressed genes in response to a continu
by
pairedttest
▴ 10
Thank you Gordon for your expertise. One question that I have now that I have a list of DE genes is how to interpret logFC of this continuo…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt
by
salias
• 0
Yes I plan to use QIIME2, but I'm Cutadapting outside QIIME so its easier to MultiQC without importing/unzipping QZAs (and QIIME2 importing…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt
by
GenoMax
141k
> 3' adapters were removed aprox. 90 times each one, so there sohuld not be read-through at all here Then you have data that has poor Q sc…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt
by
salias
• 0
Following your advice, I checked the primer and adapters sequences and edited the question accordingly
Comment: How should I make kallisto indexes?
by
dsull
★ 5.9k
We can't phase them out per se, because ``kallisto index`` is still the engine responsible for creating the index under the hood (and there…
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