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1,000 results • Page
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News:
Free draft copy of book on bioinformatics tools
alignment
Assembly
RNA-seq
next-gen
updated 15 months ago by
Ram
43k • written 8.9 years ago by
ugly.betty77
★ 1.1k
38
votes
7
replies
2.3k
views
News:
2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics
DNA-Seq
Variant-Calling
RNA-Seq
9 months ago by
David Langenberger
11k
10
votes
7
replies
2.9k
views
News:
Linux for Biologists e-book (free to read online)
linux
python
galaxy
conda
virtual-machine
2.6 years ago by
vimalkvn
▴ 320
6
votes
7
replies
2.2k
views
News:
NCBI wants to remove quality scores from SRA
quality-scores
trimming
Assembly
genome
SRA
updated 10 months ago by
Ram
43k • written 3.8 years ago by
zhousun21
▴ 40
25
votes
7
replies
6.3k
views
News:
Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi
pubmed
updated 14 months ago by
Ram
43k • written 10.5 years ago by
Pierre Lindenbaum
161k
17
votes
7
replies
9.0k
views
News:
Upcoming NGS Workshop: A Beginner's Guide to NGS Data Analysis
workshop
Assembly
transcriptomics
RNA-Seq
updated 2.1 years ago by
Ram
43k • written 9.4 years ago by
David Langenberger
11k
13
votes
7
replies
5.8k
views
News:
Free HiSeq X Ten human genome fastq test data
HiSeq-X-Ten
Human-genome
Fastq
next-gen
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
rbagnall
★ 1.8k
8
votes
6
replies
17k
views
News:
Bioinformatics PhD Programs in the US
education
PhD
updated 11 months ago by
Ram
43k • written 6.4 years ago by
Ahmed Youssef
▴ 70
1
vote
6
replies
1.2k
views
News:
Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometry
R
updated 15 months ago by
synat.keam
▴ 100 • written 16 months ago by
carlopecoraro2
★ 2.5k
17
votes
6
replies
9.0k
views
News:
Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
methylation
RNA-seq
updated 13 months ago by
Ram
43k • written 10.1 years ago by
David Langenberger
11k
8
votes
6
replies
1.5k
views
News:
Illumina to Acquire Pacific Biosciences
pacbio
illumina
updated 11 months ago by
Ram
43k • written 5.5 years ago by
Istvan Albert
100k
8
votes
6
replies
4.0k
views
News:
Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 14 months ago by
Ram
43k • written 11.3 years ago by
David Langenberger
11k
9
votes
6
replies
2.2k
views
News:
No more hidden solutions in bioinformatics
precision-medicine
genome-sequencing
updated 15 months ago by
Ram
43k • written 8.9 years ago by
HG
★ 1.2k
3
votes
6
replies
2.7k
views
News:
Brief Getting Started with Broad Firecloud tutorial posted
RNA-Seq
updated 12 months ago by
Ram
43k • written 7.8 years ago by
Sean Davis
26k
32
votes
6
replies
13k
views
7 follow
News:
Ncbi Releases Entrez Direct, The Entrez Utilities On The Unix Command Line
ncbi
genbank
pubmed
command-line
entrez
updated 14 months ago by
Ram
43k • written 10.2 years ago by
Pierre Lindenbaum
161k
2
votes
6
replies
2.9k
views
News:
Master in integrated systems biology / Luxembourg
systems-biology
Masters-course
updated 11 months ago by
Ram
43k • written 6.8 years ago by
Rainer
▴ 130
14
votes
6
replies
7.1k
views
News:
FINAL CALL: NGS Workshop - A Beginner's Guide to NGS Data Analysis (2 last seats)
NGS
RNA-Seq
workshop
updated 16 months ago by
Ram
43k • written 8.8 years ago by
David Langenberger
11k
6
votes
5
replies
5.3k
views
News:
NCBI MagicBlast ( Short read mapper )
blast
ncbi
short-read
mapper
hts
updated 12 months ago by
Ram
43k • written 7.6 years ago by
Pierre Lindenbaum
161k
9
votes
5
replies
3.1k
views
News:
The NIH Software Discovery Index | We invite your comments
NIH
software-catalog
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Sean Davis
26k
0
votes
5
replies
1.6k
views
News:
LAST CALL - 'Introduction to NGS Data Analysis' course in Berlin, October 8-10 2018
NGS
training
RNA-Seq
DNA-Seq
updated 11 months ago by
Ram
43k • written 5.9 years ago by
David Langenberger
11k
3
votes
5
replies
2.3k
views
News:
(18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology
CAFA
protein
8 months ago by
Alexander
▴ 220
3
votes
5
replies
1.3k
views
News:
Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl
GTF
updated 7 months ago by
alejandrogzi
▴ 120 • written 17 months ago by
dlaehnemann
▴ 30
4
votes
5
replies
2.8k
views
News:
Kover will provide support via Biostars
kmer
kover
machine-learning
updated 12 months ago by
Ram
43k • written 7.9 years ago by
Alexandre Drouin
▴ 90
14
votes
5
replies
3.4k
views
News:
Science Article On Social Influence Bias On Voting Patterns ("Herding") With Impact On Biostar.
meta
biostars
updated 14 months ago by
Ram
43k • written 10.7 years ago by
Michael
54k
3
votes
5
replies
2.3k
views
News:
Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
kegg
gene-enrichment
cancer
gene-ontology
updated 12 months ago by
Ram
43k • written 7.6 years ago by
EagleEye
7.5k
0
votes
5
replies
2.6k
views
News:
Workshop: Data manipulation and visualization with Python
next-gen
genome
SNP
sequence
updated 12 months ago by
Ram
43k • written 7.4 years ago by
carlopecoraro2
★ 2.5k
7
votes
5
replies
2.6k
views
News:
Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
next-gen
Unix
Assembly
alignment
updated 11 months ago by
Ram
43k • written 7.1 years ago by
carlopecoraro2
★ 2.5k
1
vote
5
replies
1.1k
views
News:
Cancer Genomics course - 2 seats left
Genomics
Cancer-Genomics
R
updated 14 months ago by
Ram
43k • written 15 months ago by
carlopecoraro2
★ 2.5k
9
votes
5
replies
3.7k
views
News:
SAMTOOLS 1.4 released
samtools
updated 11 months ago by
Ram
43k • written 7.1 years ago by
Pierre Lindenbaum
161k
9
votes
5
replies
8.8k
views
News:
A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg
api
updated 14 months ago by
Ram
43k • written 11.4 years ago by
wchknudt
▴ 50
0
votes
5
replies
2.0k
views
News:
Ashg 2012 Biostar Meetup
ASHG
updated 14 months ago by
Ram
43k • written 11.5 years ago by
Zev.Kronenberg
12k
33
votes
5
replies
3.8k
views
News:
FINAL CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
Epigenetics
Workshop
Bisulfite-Sequencing
updated 12 months ago by
Ram
43k • written 7.9 years ago by
Adele Feuerstein
▴ 460
9
votes
5
replies
10k
views
8 follow
News:
Online course: Learn Bioinformatics in 100 hours
biostars
online-course
updated 14 months ago by
Ram
43k • written 6.7 years ago by
Istvan Albert
100k
0
votes
4
replies
1.0k
views
News:
Pan-Structural Variation hackathon in the Cloud!
SV
sequencing
updated 10 months ago by
Ram
43k • written 4.2 years ago by
Medhat
9.7k
6
votes
4
replies
1.2k
views
News:
Upcoming online training courses
Python
R
2.7 years ago by
carlopecoraro2
★ 2.5k
19
votes
4
replies
2.5k
views
News:
How to analyze NGS data: An overview of nine different IT solutions
NGS
RNA-Seq
DNA-Seq
updated 12 months ago by
Ram
43k • written 7.5 years ago by
David Langenberger
11k
2
votes
4
replies
1.2k
views
News:
Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
R
RNA-seq
Bioconductor
updated 10 months ago by
Ram
43k • written 4.0 years ago by
carlopecoraro2
★ 2.5k
14
votes
4
replies
3.4k
views
News:
FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq
next-gen
NGS
updated 21 months ago by
Ram
43k • written 8.2 years ago by
David Langenberger
11k
1
vote
4
replies
1.5k
views
News:
Spring School for RNA-seq Sequence Analysis
RNA-Seq
genome
sequence
sequencing
updated 12 months ago by
Ram
43k • written 7.3 years ago by
scientificcomputingismms
▴ 10
7
votes
4
replies
2.7k
views
News:
Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python
training
updated 14 months ago by
Ram
43k • written 11.1 years ago by
Mary
11k
15
votes
4
replies
2.6k
views
News:
Call For Nominations: 2013 Benjamin Franklin Award
benjamin-franklin-award
award
updated 14 months ago by
Ram
43k • written 11.2 years ago by
Pierre Lindenbaum
161k
12
votes
4
replies
2.0k
views
News:
#NGSchool2018 summer school in bioinformatics
NGSchool
Personalised-Medicine
Nanopore
updated 11 months ago by
Ram
43k • written 5.9 years ago by
kzkedzierska
▴ 290
9
votes
4
replies
2.5k
views
7 follow
News:
fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 9 months ago by
Ram
43k • written 2.7 years ago by
chen
★ 2.5k
5
votes
4
replies
1.9k
views
News:
2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene
updated 12 months ago by
Ram
43k • written 7.2 years ago by
pediatriconcology
• 0
33
votes
4
replies
6.8k
views
News:
Rosalind: A Novel Bioinformatics Education Platform
education
updated 14 months ago by
Ram
43k • written 11.6 years ago by
phcompeau
▴ 330
10
votes
4
replies
2.6k
views
News:
Ensembl 77 is out
ensembl
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Emily
23k
3
votes
4
replies
2.4k
views
News:
Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics
microbiome
training
updated 12 months ago by
Ram
43k • written 7.5 years ago by
AABI
▴ 140
9
votes
4
replies
1.6k
views
News:
Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 11 months ago by
Ram
43k • written 6.2 years ago by
Laura
★ 1.8k
1
vote
4
replies
1.8k
views
News:
Bioconductor Development Visualization
bioconductor
updated 22 months ago by
Ram
43k • written 9.0 years ago by
Sean Davis
26k
4
votes
4
replies
1.9k
views
News:
12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome
Computational-Biology
updated 11 months ago by
Ram
43k • written 6.0 years ago by
bioinformatics
▴ 20
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A: Blast Settings For Short Sequences
A: Blast Settings For Short Sequences
Comment: Heatmap and rna-seq
Answer: Heatmap and rna-seq
Comment: Heatmap and rna-seq
A: should FASTA files be sorted before indexed with SAMtools?
Answer: A faidx-indexed FASTA format file or a FASTA format file
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Answer: Limma Analysis Agilent Microarray Data (GPL1708)
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There is an Agilent array case study in the limma User's Guide, which you might find helpful and somewhat simpler. I don't recommend col…
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The comparison you've done seems exactly right to test whether treatment 2 modifies or enhances the effect of treatment 1. Have you exam…
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There's no need for form a contrast because the score variable is already in the model. A continuous variable is its own contrast. Just run…
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Oh wow, bedops closest-features, how did I overlook that!! I didn't know about it; thank you! Your awk script is beautiful. This worked per…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴ 10
Thank you Pierre! I'll try this out with my full data set.
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cao510927
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I happend to see one paper doing the similar thing, share it with you guys, "A systematic evaluation of normalization methods and probe rep…
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35k
I think Pierre's answer might be correct for your test input, but it doesn't account for the start position of the reference element and so…
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You need to be clear about how `Seurat` defines highly variable genes here. Highly variable genes are the genes that have very high express…
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GenoMax
141k
Please include a link when you are recommending a tool. There can be programs with similar names.
Answer: Heatmap and rna-seq
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dsull
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Check out clustergrammer from Avi Ma'ayan's lab.
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
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Ram
43k
Simple: ```r data <- lapply(files, read_tsv) data <- Reduce(merge, data) # or Reduce(full_join, data) ``` <a href="" title="Text added bec…
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Hi, Just thought I'd share this code snippet here for when each file contains multiple samples. I tried using lapply (as suggested by Ram)…
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Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
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If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value. https://www.b…
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