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1,000 results • Page
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News:
New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind
ChIP-seq
deepTools
visualization
ATAC-seq
5 months ago by
Rory Stark
★ 1.6k
2
votes
7
replies
1.3k
views
News:
Beyond pest control: What can we learn from parasites?
parasitism
heme
in silico
docking
News
3.9 years ago by
Michael Dondrup
52k
25
votes
7
replies
2.3k
views
6 follow
News:
Who qualifies to be a bioinformatician?
resume
bioinformatician
vc
updated 7 months ago by
Ram
37k • written 7.8 years ago by
Pierre Lindenbaum
152k
10
votes
7
replies
1.6k
views
News:
Linux for Biologists e-book (free to read online)
linux
python
galaxy
conda
virtual-machine
16 months ago by
vimalkvn
▴ 310
27
votes
7
replies
3.1k
views
News:
The Biostar Swarm: A Visualization
biostar
updated 14 months ago by
Ram
37k • written 10.0 years ago by
Istvan Albert
96k
3
votes
6
replies
2.3k
views
News:
Brief Getting Started with Broad Firecloud tutorial posted
RNA-Seq
News
6.6 years ago by
Sean Davis
26k
32
votes
6
replies
12k
views
7 follow
News:
Ncbi Releases Entrez Direct, The Entrez Utilities On The Unix Command Line
ncbi
linux
command-line
entrez
pubmed
genbank
News
updated 15 months ago by
Ram
37k • written 9.0 years ago by
Pierre Lindenbaum
152k
2
votes
6
replies
2.2k
views
News:
Master in integrated systems biology / Luxembourg
Master course
bioinformatics
systems biology
News
5.5 years ago by
Rainer
▴ 130
1
vote
6
replies
594
views
News:
Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometry
R
updated 24 days ago by
synat.keam
▴ 70 • written 7 weeks ago by
carlopecoraro2
★ 2.2k
8
votes
6
replies
1.1k
views
News:
Illumina to Acquire Pacific Biosciences
illumina
pacbio
News
4.3 years ago by
Istvan Albert
96k
17
votes
6
replies
8.3k
views
News:
Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
News
methylation
rna-seq
updated 16 months ago by
Ram
37k • written 8.9 years ago by
David Langenberger
9.8k
8
votes
6
replies
3.7k
views
News:
Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
rna-seq
bioinformatics
News
10.0 years ago by
David Langenberger
9.8k
8
votes
6
replies
16k
views
News:
Bioinformatics PhD Programs in the US
education
PhD
News
3.9 years ago by
Ahmed Youssef
▴ 70
14
votes
6
replies
6.4k
views
News:
FINAL CALL: NGS Workshop - A Beginner's Guide to NGS Data Analysis (2 last seats)
NGS
RNA-Seq
workshop
updated 8 weeks ago by
Ram
37k • written 7.6 years ago by
David Langenberger
9.8k
9
votes
6
replies
1.8k
views
News:
No more hidden solutions in bioinformatics
precision-medicine
genome-sequencing
updated 17 days ago by
Ram
37k • written 7.7 years ago by
HG
★ 1.2k
0
votes
5
replies
2.3k
views
News:
Workshop: Data manipulation and visualization with Python
next-gen
sequence
genome
SNP
News
6.2 years ago by
carlopecoraro2
★ 2.2k
14
votes
5
replies
3.0k
views
News:
Science Article On Social Influence Bias On Voting Patterns ("Herding") With Impact On Biostar.
biostar
meta
News
updated 9.5 years ago by
Mary
11k • written 9.5 years ago by
Michael Dondrup
52k
4
votes
5
replies
2.4k
views
News:
Kover will provide support via Biostars
kover
kmer
machine learning
news
News
updated 6.1 years ago by
hfan22
▴ 40 • written 6.7 years ago by
Alexandre Drouin
▴ 90
1
vote
5
replies
592
views
News:
Cancer Genomics course - 2 seats left
Genomics
Cancer-Genomics
R
updated 3 days ago by
Ram
37k • written 4 weeks ago by
carlopecoraro2
★ 2.2k
9
votes
5
replies
8.1k
views
News:
A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg
api
News
updated 10.2 years ago by
Manu Prestat
4.1k • written 10.2 years ago by
wchknudt
▴ 50
3
votes
5
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1.9k
views
News:
Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
tool
kegg
geneontology
cancer
geneenrichment
News
updated 6.4 years ago by
Mike
★ 1.8k • written 6.4 years ago by
EagleEye
7.4k
9
votes
5
replies
3.2k
views
News:
SAMTOOLS 1.4 released
samtools
News
5.9 years ago by
Pierre Lindenbaum
152k
0
votes
5
replies
1.3k
views
News:
LAST CALL - 'Introduction to NGS Data Analysis' course in Berlin, October 8-10 2018
NGS
training
DNA-Seq
RNA-Seq
News
4.7 years ago by
David Langenberger
9.8k
6
votes
5
replies
4.7k
views
News:
NCBI MagicBlast ( Short read mapper )
ncbi
blast
hts
mapper
shortread
News
6.4 years ago by
Pierre Lindenbaum
152k
7
votes
5
replies
2.2k
views
News:
Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
Assembly
next-gen
alignment
Unix
News
5.9 years ago by
carlopecoraro2
★ 2.2k
9
votes
5
replies
2.7k
views
News:
The NIH Software Discovery Index | We invite your comments
NIH
software-catalog
updated 12 months ago by
Ram
37k • written 8.3 years ago by
Sean Davis
26k
0
votes
5
replies
1.7k
views
News:
Ashg 2012 Biostar Meetup
News
updated 10.3 years ago by
Istvan Albert
96k • written 10.3 years ago by
Zev.Kronenberg
12k
9
votes
5
replies
9.5k
views
8 follow
News:
Online course: Learn Bioinformatics in 100 hours
online course
biostar
News
updated 5.4 years ago by
lucilepain
• 0 • written 5.5 years ago by
Istvan Albert
96k
33
votes
5
replies
3.3k
views
News:
FINAL CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
Workshop
Epigenetics
Bisulfite Sequencing
News
updated 6.3 years ago by
David Langenberger
9.8k • written 6.7 years ago by
Adele Feuerstein
▴ 460
7
votes
4
replies
2.4k
views
News:
Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python
training
News
updated 9.3 years ago by
marksimon112
• 0 • written 9.8 years ago by
Mary
11k
19
votes
4
replies
1.9k
views
News:
How to analyze NGS data: An overview of nine different IT solutions
NGS
RNA-Seq
DNA-Seq
News
updated 6.3 years ago by
Lars
▴ 910 • written 6.3 years ago by
David Langenberger
9.8k
9
votes
4
replies
3.3k
views
News:
Conference Announcement - Camda 2013
conference
classification
News
10.0 years ago by
okko.clevert
▴ 240
12
votes
4
replies
1.6k
views
News:
#NGSchool2018 summer school in bioinformatics
NGSchool
Nanopore
Personalised Medicine
News
4.6 years ago by
kzkedzierska
▴ 290
6
votes
4
replies
898
views
News:
Course online - Comparative Genomics
assembly
next-gen
genome
alignment
News
2.8 years ago by
carlopecoraro2
★ 2.2k
10
votes
4
replies
569
views
News:
Good morning
good
morning
updated 5 months ago by
Istvan Albert
96k • written 5 months ago by
Kevin Blighe
84k
4
votes
4
replies
1.4k
views
News:
VCFclin working group
vcfclin
News
8.8 years ago by
keilbeck
▴ 30
3
votes
4
replies
2.0k
views
News:
Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics
training
microbiome
News
5.3 years ago by
AABI
▴ 130
8
votes
4
replies
1.5k
views
News:
supporting vg users on biostars
vg
graph
vgteam
genome
News
variation
updated 7 weeks ago by
colindaven
4.4k • written 3.4 years ago by
Erik Garrison
★ 2.3k
31
votes
4
replies
6.0k
views
News:
Rosalind: A Novel Bioinformatics Education Platform
bioinformatics
education
News
10.4 years ago by
phcompeau
▴ 310
0
votes
4
replies
373
views
News:
Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl
GTF
updated 7 weeks ago by
Ben_Ensembl
★ 2.2k • written 10 weeks ago by
dlaehnemann
▴ 10
6
votes
4
replies
770
views
News:
Upcoming online training courses
Python
R
18 months ago by
carlopecoraro2
★ 2.2k
4
votes
4
replies
1.5k
views
News:
12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome
bioinformatics
Computational Biology
News
updated 4.3 years ago by
cdsouthan
★ 1.9k • written 4.8 years ago by
bioinformatics
▴ 20
2
votes
4
replies
1.1k
views
News:
Online training - Snakemake: Reproducible and Scalable Bioinformatic Workflows
Snakemake
Pipeline
14 months ago by
carlopecoraro2
★ 2.2k
5
votes
4
replies
1.6k
views
News:
2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene
News
updated 5.9 years ago by
GenoMax
125k • written 5.9 years ago by
pediatriconcology
• 0
2
votes
4
replies
868
views
News:
Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
rna-seq
R
Bioconductor
News
updated 2.7 years ago by
lessismore
★ 1.3k • written 2.7 years ago by
carlopecoraro2
★ 2.2k
9
votes
4
replies
1.2k
views
News:
Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
News
4.9 years ago by
Laura
★ 1.8k
4
votes
4
replies
2.6k
views
News:
Join The Dnanexus Developer Program
cloud
api
News
9.6 years ago by
akislyuk
▴ 30
1
vote
4
replies
1.4k
views
News:
Bioconductor Development Visualization
bioconductor
updated 7 months ago by
Ram
37k • written 7.8 years ago by
Sean Davis
26k
1
vote
4
replies
1.7k
views
News:
webserver of TCGA data www.tcgaportal.org
RNA-Seq
gene
rna-seq
genome
News
4.7 years ago by
xushutan
▴ 40
10
votes
4
replies
2.3k
views
News:
Ensembl 77 is out
ensembl
updated 12 months ago by
Ram
37k • written 8.4 years ago by
Emily
23k
1,000 results • Page
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Recent Votes
Does Gene length corrected TMM [GeTMM] violate any assumptions of TMM normalization?
A: Does Gene length corrected TMM [GeTMM] violate any assumptions of TMM normalizat
C: Does Gene length corrected TMM [GeTMM] violate any assumptions of TMM normalizat
C: Using RPK counts as DESeq2 input
Answer: how to split multi-fasta file into single fasta file named by header
A: How To Split A Multiple Fasta
Comment: Question on how to filter DESeq2 results correctly and use of the results functi
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Recent Replies
Comment: fastqc: Per base sequence content
by
GenoMax
125k
If the library was made using tagmentation then you will see that pattern. Flag warnings on FastQC do not immediately indicate that the da…
Answer: What type of database does gnomAD use?
by
Matthias Zepper
2.9k
I suppose there are multiple? Queries via Hail are very likely run against a [Matrix Table][1], but the web application likely uses a diffe…
Comment: What type of database does gnomAD use?
by
Pierre Lindenbaum
152k
> I have my own data, so I would like to try to create my own type of exome aggregation database, and the idea was to try to replicate gnom…
Answer: What type of database does gnomAD use?
by
Pierre Lindenbaum
152k
Google Cloud SDK https://github.com/broadinstitute/gnomad-browser/tree/main/deploy , but previous versions used mongodb https://github.com/…
Comment: Clustering and dynamic tree cutting
by
andres.firrincieli
3.1k
I don't think the `cutreeDynamic` function will work very well with a distance matrix calculated from pearson correlation values: `as.matri…
Comment: Clustering and dynamic tree cutting
by
harish
• 0
These are differentially expressed genes, which are around 15K genes from a total of 30 K genes. Then I follow the clustering protocol as g…
Comment: ceres score in crispr screen
by
edus_bioinfo
▴ 20
I solved the issue with using bowtie. But now I am experiencing this issue; > Error in makeGRangesFromDataFrame(., seqinfo = genomeinfo, k…
Comment: Protein protein interactions
by
Peerzada
• 0
Sir, How much time does this server take to give output for 1 pair of proteins as I have submitted several hours ago and it still shows ru…
Comment: Question on how to filter DESeq2 results correctly and use of the results functi
by
Frederik
• 0
Thanks alot :)
Comment: Is it possible to do bedtools multicov across the entire genome?
by
amy__
▴ 50
Amazing, thank you so much! BW, Amy
Answer: Is it possible to do bedtools multicov across the entire genome?
by
GenoMax
125k
`mosdepth` ([**LINK**][1]) is an excellent/fast alternative. [1]: https://github.com/brentp/mosdepth
Answer: Index with unmasked or masked in HISAT2
by
GenoMax
125k
Use `top level` file. See [**README**][1] more information about other files you are referring to. [1]: https://ftp.ebi.ac.uk/en…
Answer: Is it possible to do bedtools multicov across the entire genome?
by
Nicolas Rosewick
10k
Simply use then `bedtools genomecov` with `-d` parameter : https://bedtools.readthedocs.io/en/latest/content/tools/genomecov.html
Answer: How to enable multiple cores/threads for Bowtie2 or BWA using Macbook M2 chip?
by
GenoMax
125k
Programs do not use all the threads/cores all the time. They will do so during appropriate part of the analysis. As long as you have enable…
Comment: Clustering and dynamic tree cutting
by
andres.firrincieli
3.1k
Help me to understand. Is this a clustering analysis of differentially expressed genes or an unsupervised clustering analysis (eg WGCNA)?
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