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726 results • Page 6 of 15
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6
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4
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1.3k
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News: Course online - Comparative Genomics
assembly genome next-gen alignment
updated 11 months ago by 43k • written 4.1 years ago by ★ 2.5k
0
votes
0
replies
816
views
News: TScourse: Introduction to GWAS (Genome-Wide Association Studies) (July 6th-10th, 2020, Crete (Greece))
PLINK PRSice GWAS R Genome
updated 11 months ago by 43k • written 4.1 years ago by ▴ 70
0
votes
0
replies
849
views
News: Online Live TScourse: Python Machine Learning in Biology (July 20th-24th, 2020)
online-course Python Machine-learning
updated 11 months ago by 43k • written 4.1 years ago by ▴ 70
2
votes
0
replies
662
views
News: Online course - Introduction to Machine Learning in R -13-16 July 2020
Machine-Learning R
updated 11 months ago by 43k • written 4.1 years ago by ★ 2.5k
0
votes
0
replies
751
views
News: Online Live TScourse: Introduction to Python for Biology (Transmitting Science) July 13th-17th, 2020
online-course progranming Python
updated 11 months ago by 43k • written 4.1 years ago by ▴ 70
0
votes
0
replies
657
views
News: precisionFDA is launching the Truth Challenge V2: Calling Variants from Short and Long Reads in Difficult-to-Map Regions on May 1st!
gene genome
updated 11 months ago by 43k • written 4.1 years ago by ▴ 150
2
votes
0
replies
644
views
News: Tailored online courses in R
Machine-Learning R tidyverse
updated 11 months ago by 43k • written 4.1 years ago by ★ 2.5k
0
votes
0
replies
645
views
News: Reminder for the precisionFDA Detecting Adverse Event Anomalies Using FDA Open Data Challenge
R
updated 11 months ago by 43k • written 4.1 years ago by ▴ 150
6
votes
13
replies
2.1k
views
News: Ensembl reduced functionality: 10th March-16th April 2020
BLAT VEP Ensembl service
updated 11 months ago by 43k • written 4.2 years ago by ★ 2.4k
2
votes
0
replies
525
views
News: ONLINE COURSE-Advanced programming in R
R
updated 11 months ago by 43k • written 4.1 years ago by ★ 2.5k
2
votes
0
replies
825
views
News: Landscape Genomics course ONLINE
snp R next-gen
updated 11 months ago by 43k • written 4.1 years ago by ★ 2.5k
1
vote
2
replies
1.7k
views
News: NCBI Datasets - try it out!
Assembly refseq genome ncbi
updated 11 months ago by 43k • written 4.1 years ago by ★ 3.7k
1
vote
0
replies
1.3k
views
News: Population Genomics course online
R SNP next-gen
updated 11 months ago by 43k • written 4.1 years ago by ★ 2.5k
4
votes
0
replies
1.4k
views
News: ONLINE course - Metagenomics, metatranscriptomics, and multi'omics for microbial community studies
next-gen-sequencing
updated 11 months ago by 43k • written 4.2 years ago by ★ 2.5k
2
votes
1
reply
2.6k
views
News: RNAseq data analysis with R/ Bioconductor - ONLINE COURSE
R RNA-Seq Bioconductor
updated 11 months ago by 43k • written 4.2 years ago by ★ 2.5k
0
votes
0
replies
558
views
News: Results are now Available for the precisionFDA, George Washington University, and FDA/CBER HIVE BioCompute Object App-a-thon
R
updated 11 months ago by 43k • written 4.2 years ago by ▴ 150
0
votes
0
replies
818
views
News: Training in Linux for Biomedical Researchers@NIH, USA,May 13-15,2020
Linux Training Biomedical Researchers Programming
updated 11 months ago by 43k • written 4.3 years ago by ▴ 140
6
votes
0
replies
978
views
News: CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
cwl thanks
updated 11 months ago by 43k • written 4.6 years ago by ★ 1.9k
0
votes
0
replies
595
views
News: Deadline extended for the FDA Open Data Adverse Event Anomalies Challenge
R
updated 11 months ago by 43k • written 4.2 years ago by ▴ 150
0
votes
0
replies
759
views
News: Cellosaurus release 34 is available
knowledgebase cell-line
updated 11 months ago by 43k • written 4.2 years ago by ▴ 120
1
vote
0
replies
625
views
News: Calling Data Scientists and Bioinformaticians for the NHLBI Big Data Challenge Competition
Big-Data Challenge Competition
updated 11 months ago by 43k • written 4.2 years ago by ▴ 10
0
votes
0
replies
666
views
News: Reminder for the FDA Open Data Adverse Event Anomalies Challenge
R
updated 11 months ago by 43k • written 4.2 years ago by ▴ 150
1
vote
0
replies
933
views
News: Submit to ACM COMPASS 2020 -- Now with a Global Health Track - Deadline extended to March 8th!!
global-health public-health
updated 11 months ago by 43k • written 4.2 years ago by 18k
0
votes
0
replies
679
views
News: Training in NCBI Resources for Biomedical Researchers @NIH
Resources NCBI Biomedical Researchers Programming
updated 11 months ago by 43k • written 4.2 years ago by ▴ 140
0
votes
0
replies
904
views
News: New Courses @ Edinburgh Genomics
alignment GATK R RNA-Seq Python
updated 11 months ago by 43k • written 4.2 years ago by ▴ 40
2
votes
0
replies
549
views
News: Comparative Genomics course in Berlin
Assembly next-gen-sequencing alignment
updated 11 months ago by 43k • written 4.2 years ago by ★ 2.5k
0
votes
4
replies
1.0k
views
News: Pan-Structural Variation hackathon in the Cloud!
SV sequencing
updated 11 months ago by 43k • written 4.3 years ago by 9.7k
1
vote
1
reply
947
views
News: Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
detection webinar RNA-Seq gene-fusion
updated 11 months ago by 43k • written 4.3 years ago by ▴ 40
0
votes
0
replies
623
views
News: Deadline extended for the FDA Open Data Adverse Event Anomalies Challenge
R
updated 11 months ago by 43k • written 4.2 years ago by ▴ 150
1
vote
0
replies
862
views
News: hackseqRNA: Computational RNA hackathon, Vancouver BC
hackathon RNA
updated 11 months ago by 43k • written 4.2 years ago by ▴ 50
0
votes
0
replies
614
views
News: PrecisionFDA FDA Open Data Challenge Reminder
R
updated 11 months ago by 43k • written 4.2 years ago by ▴ 150
9
votes
3
replies
4.8k
views
News: Bioinformatics Contest 2020. Call for problems
contest
updated 11 months ago by 43k • written 4.7 years ago by ▴ 930
0
votes
0
replies
735
views
News: Training in Bioinformatic Analysis of Next Generation Sequencing Data@NIH
Genomics RNA-Seq Biomedical next-gen
updated 11 months ago by 43k • written 4.3 years ago by ▴ 140
0
votes
0
replies
599
views
News: Georgetown ICBI and precisionFDA Brain Cancer Challenge Final Reminder
R
updated 11 months ago by 43k • written 4.3 years ago by ▴ 150
0
votes
0
replies
590
views
News: Training in Variant Analysis @NIH, March 23-26,2020
Variant-calling Variant-Analysis Genotype next-gen
updated 11 months ago by 43k • written 4.3 years ago by ▴ 140
0
votes
0
replies
552
views
News: Phase 2 Data Now Available for the precisionFDA and Georgetown ICBI Brain Cancer Challenge
gene
updated 11 months ago by 43k • written 4.3 years ago by ▴ 150
0
votes
0
replies
775
views
News: Training in Programming for Biomedical Researchers @NIH, USA,March 2-5,2020
Researchers Biomedical Programming
updated 11 months ago by 43k • written 4.3 years ago by ▴ 140
0
votes
0
replies
707
views
News: Training in Creating Plots, Graphs and Maps using R @ NIH
RNA-Seq Biomedical next-gen
updated 11 months ago by 43k • written 4.3 years ago by ▴ 140
0
votes
0
replies
703
views
News: Training in Advanced Transcriptomics (RNA-Seq) Analysis
Transcriptome-analysis RNA-Seq Biomedical next-gen
updated 11 months ago by 43k • written 4.3 years ago by ▴ 140
2
votes
0
replies
704
views
News: Population Genomics course
R SNP next-gen
updated 11 months ago by 43k • written 4.3 years ago by ★ 2.5k
7
votes
0
replies
1.0k
views
News: New layout for NCBI BLAST FTP database site starting February 4, 2020
ftp blast blast_index blast-plus
updated 11 months ago by 43k • written 4.3 years ago by 142k
1
vote
0
replies
710
views
News: Bioinformatics for Precision Oncology 2020 Program
cancer-biology RNA-Seq cancer
updated 11 months ago by 43k • written 4.3 years ago by ▴ 10
0
votes
0
replies
554
views
News: precisionFDA & Georgetown ICBI Brain Cancer Predictive Modeling Challenge Extension and New Incentive
genome
updated 11 months ago by 43k • written 4.3 years ago by ▴ 150
0
votes
0
replies
650
views
News: 2nd Workshop on Single-Cell Sequencing
single-cell sequencing
updated 11 months ago by 43k • written 4.3 years ago by • 0
1
vote
0
replies
647
views
News: New precisionFDA data science challenge: Help advance postmarket surveillance techniques for FDA regulated products
R
updated 11 months ago by 43k • written 4.3 years ago by ▴ 150
2
votes
0
replies
808
views
News: RNAseq data analysis with R and Bioconductor
R RNA-Seq RNA Bioconductor
updated 11 months ago by 43k • written 4.3 years ago by ★ 2.5k
2
votes
0
replies
1.3k
views
News: Introduction to genome-wide association studies (GWAS)
Unix GWAS R
updated 11 months ago by 43k • written 4.3 years ago by ★ 2.5k
0
votes
0
replies
678
views
News: Ensembl reduced functionality - Monday 20th January
Service Ensembl
updated 11 months ago by 43k • written 4.3 years ago by ★ 2.4k
1
vote
2
replies
770
views
News: Ensembl reduced functionality, early March
ensembl
updated 11 months ago by 43k • written 4.3 years ago by 23k
0
votes
0
replies
563
views
News: precisionFDA and Georgetown-ICBI Brain Cancer Predictive Modeling Challenge Submission Reminder
genome
updated 11 months ago by 43k • written 4.3 years ago by ▴ 150
726 results • Page 6 of 15
Recent Votes
Answer: RNAseq coverage vs depth for transcript isoform expression?
constructing pangenome through psvcp
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Answer: RNAseq coverage vs depth for transcript isoform expression?
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
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Recent Awards • All
Scholar to jv ★ 1.8k
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Recent Replies
Comment: constructing pangenome through psvcp by analyst ▴ 50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by GenoMax 142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R by 1769mkc ★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks by ATpoint 82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner by Joe 21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression? by Gordon Smyth ★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Table 1 o…
Comment: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA by mavy ▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object by Alex Reynolds 35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF) by aidangcruickshank ▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data? by Ngrin • 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2 by swbarnes2 14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot by LauferVA 4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
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