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News: MinION Community Meeting: Thursday Dec 3rd (now live)
minion
updated 21 months ago by 43k • written 8.4 years ago by 100k
19
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4
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News: How to analyze NGS data: An overview of nine different IT solutions
NGS RNA-Seq DNA-Seq
updated 12 months ago by 43k • written 7.5 years ago by 11k
0
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0
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News: Nature Genetics - DNA Methyloma Analysis in Burkitt and follicular lymphomas
workshop NGS epigenetics epigenomics
updated 2.4 years ago by 43k • written 8.6 years ago by 11k
12
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3
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News: Google Summer of Code and Open Bioinformatics Foundation is looking for students
GSoC open-source
updated 13 months ago by 43k • written 8.1 years ago by 8.4k
2
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0
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News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
Statistics R BioCounductor
updated 11 months ago by 43k • written 6.6 years ago by ▴ 20
3
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0
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News: Samtools/htslib/bcftools 1.1 released
htslib samtools
updated 13 months ago by 43k • written 9.6 years ago by 104k
0
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0
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2.4k
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News: Total RNA Commercial Kit Comparison Study
microarray NGS RNA-Seq qPCR
updated 13 months ago by 43k • written 9.4 years ago by ▴ 40
0
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0
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News: WORKSHOP - Landscape genetic data analysis using R
genome R RNA-Seq
updated 11 months ago by 43k • written 7.1 years ago by ▴ 110
6
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3
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News: Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
ChIP-Seq next-gen RNA-Seq
updated 12 months ago by 43k • written 7.2 years ago by • 0
14
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1
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2.4k
views
News: The Gene Ontology Handbook (open access)
training handbook GO
updated 12 months ago by 43k • written 7.4 years ago by ▴ 740
2
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0
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2.4k
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News: The NAR annual Web Server Issue is here..
web-servers
updated 13 months ago by 43k • written 8.8 years ago by ★ 5.1k
0
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0
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2.4k
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News: Intro to Python for Biologists
next-gen RNA-Seq SNP
updated 11 months ago by 43k • written 6.5 years ago by ▴ 110
11
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2
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views
News: Ensembl 76 is out
Genome-browser Ensembl
updated 2.4 years ago by 43k • written 9.7 years ago by 23k
0
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1
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News: Hands-on training in Bioinformatics and Biomedical Data Science
NGS training
updated 11 months ago by 43k • written 5.6 years ago by ▴ 10
2
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0
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News: Bioinformatics Specialization on Coursera is On Demand
Assembly education alignment sequencing RNA-Seq
updated 13 months ago by 43k • written 7.9 years ago by ▴ 50
1
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2
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2.4k
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News: Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics Metagenomics
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.5k
1
vote
1
reply
2.4k
views
News: Bioinformatics for Cancer Genomics Workshop
Cancer-Genomics
updated 21 months ago by 43k • written 8.3 years ago by ▴ 30
4
votes
0
replies
2.4k
views
News: Upcoming Workshop: Ensembl Perl APIs
ensembl APIs Perl workshops
updated 13 months ago by 43k • written 9.5 years ago by ★ 5.2k
3
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4
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2.4k
views
News: Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics microbiome training
updated 12 months ago by 43k • written 7.6 years ago by ▴ 140
10
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7
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News: Free draft copy of book on bioinformatics tools
alignment Assembly RNA-seq next-gen
updated 15 months ago by 43k • written 9.0 years ago by ★ 1.1k
4
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0
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News: Google Genomics and Broad Institute Team Up to Tackle Genomic Data
google broad gatk
updated 16 months ago by 43k • written 8.9 years ago by ★ 5.3k
0
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3
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2.4k
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News: Eukaryotic Metabarcoding workshop
next-gen blast alignment
updated 12 months ago by 43k • written 7.4 years ago by ★ 2.5k
0
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1
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2.4k
views
News: Nature Index: Novogene is teaming up with laboratories worldwide for life sciences and human health research
NGS Nature Sequencing
updated 16 months ago by 43k • written 2.1 years ago by ▴ 420
8
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2
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News: The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast Assembly RNA-Seq
updated 11 months ago by 43k • written 7.0 years ago by ▴ 120
4
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0
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News: 2nd UK Bioinformatics Student Symposium on 7 Oct '15 at TGAC, Norwich
symposium
updated 19 months ago by 43k • written 8.7 years ago by ▴ 100
0
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0
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News: DEADLINE 18th of March: 2nd Annual Training Course on Viral Bioinformatics and Genomics
virus genomics virology
updated 21 months ago by 43k • written 8.3 years ago by ★ 3.0k
0
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9
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News: Practical Genomics: From Biology to Biostatistics Workshop (Baltimore, MD)
workshop
updated 14 months ago by 43k • written 9.8 years ago by 10k
0
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1
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2.3k
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News: Webinar on Unique Molecular Identifier (UMI)-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study
Strand-NGS NGS RNA-Seq UMI dna-seq
updated 11 months ago by 43k • written 6.5 years ago by ▴ 70
3
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0
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News: Programming for Evolutionary Biology course, Nov 24 - Dec 12 2014, Bogota, Colombia
Perl R Linux
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 3.7k
1
vote
0
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2.3k
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News: APPLICATION DEADLINE IS DECEMBER 5 for Penn State Applied Bioinformatics Program – 100% Online
education courses online
updated 13 months ago by 43k • written 9.5 years ago by ▴ 10
4
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1
reply
2.3k
views
News: ENCODE Users' Meeting
encode ucsc conference functional-genomics ensembl
updated 21 months ago by 43k • written 8.9 years ago by 23k
2
votes
0
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2.3k
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News: Course on "Genomic data visualisation and manipulation using Python"
genome next-gen RNA-Seq
updated 11 months ago by 43k • written 6.7 years ago by ▴ 60
7
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2
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2.3k
views
News: Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing moRNAs pri-miRNAs zebrafish
updated 21 months ago by 43k • written 8.4 years ago by ★ 2.4k
3
votes
3
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News: Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 14 months ago by 43k • written 11.0 years ago by ▴ 830
1
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0
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News: Multivariate analysis of ecological communities in R with the VEGAN package (VGNR01)
R
updated 11 months ago by 43k • written 6.1 years ago by ▴ 60
3
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1
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2.3k
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News: NCBI : New API Keys for the E-utilities
pubmed eutils ncbi api
updated 11 months ago by 43k • written 6.5 years ago by 161k
0
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0
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2.3k
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News: Coursera Bioinformatics Specialization will start in August 31 2015
Coursera
updated 19 months ago by 43k • written 8.7 years ago by ★ 2.2k
0
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0
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2.3k
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News: Want to learn more about data visualization with Python? Read our interview to Dr. Martin Jones.
genome next-gen-sequencing
updated 12 months ago by 43k • written 7.3 years ago by ★ 2.5k
0
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0
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2.3k
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News: Workshop on Computational Approaches for Cancer, Supercomputer 2015 meeting in Austin, TX
meeting supercomputer cancer
updated 19 months ago by 43k • written 8.7 years ago by 26k
5
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1
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2.3k
views
News: New version of the GATB library
minia next-gen gatb dsk
updated 2.3 years ago by 43k • written 9.3 years ago by ▴ 730
0
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0
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News: Fully funded PhD studentships in Quantitative Biology, Universite de Lausanne, Lausanne, Switzerland
snp R genome RNA-Seq
updated 11 months ago by 43k • written 5.5 years ago by • 0
1
vote
0
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2.3k
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News: The power and promise of Genome-Wide Association Studies
Meta-analysis NGS GWAS Linux R
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
6
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0
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2.3k
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News: Bioinformatics internships with Google Summer of Code 2019
intern Ensembl GSOC
updated 11 months ago by 43k • written 5.2 years ago by 23k
0
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0
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2.3k
views
News: Genomics Summer School- 6 weeks NGS Data Analysis Program
Data-Analysis Exome DNA-Seq RNA-Seq
updated 11 months ago by 43k • written 7.1 years ago by • 0
6
votes
2
replies
2.3k
views
News: Galaxy-specific Biostar Instance
galaxy biostars
updated 14 months ago by 43k • written 10.0 years ago by ▴ 380
38
votes
7
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2.3k
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News: 2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics DNA-Seq Variant-Calling RNA-Seq
9 months ago by David Langenberger 11k
0
votes
0
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2.3k
views
News: Second Annual International Environmental Omics conference to be held in Liverpool, UK. September 15th-18th
Conference
updated 14 months ago by 43k • written 9.8 years ago by ★ 4.0k
3
votes
5
replies
2.3k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
8 months ago by Alexander ▴ 220
3
votes
5
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2.3k
views
News: Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
kegg gene-enrichment cancer gene-ontology
updated 13 months ago by 43k • written 7.6 years ago by 7.5k
0
votes
0
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2.3k
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News: Workshop on Machine Learning for Transcriptomics Data
next-gen RNA-Seq
updated 11 months ago by 43k • written 6.0 years ago by ▴ 340
1,000 results • Page 5 of 20
Recent Votes
C: TOPGO- how to do GO enrichment using a custom go database?
Answer: NGS forensics: how to know if data is fabricated
Comment: Adjust pvalue in R with different approach give me all different outcome
Comment: Bacterial plasmid analysis
Comment: DESeq2 processing problems
Comment: What does 'bundle_uuid' refer to in this metadata sheet?
What Is The Difference Between Structural Variants (Svs) And Copy-Number Variants (Cnvs)?
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Recent Replies
Comment: Bacterial plasmid analysis by nicole.kavanagh • 0
I think I will perhaps use their predominant PlasmidFinder type to group plasmids together and create separate core phylogenies for each as…
Comment: Bacterial plasmid analysis by GenoMax 141k
Can you classify the plasmids based on function (resistance genes they are carrying or some other criteria). Sizes above are indicating a w…
Comment: DESeq2 processing problems by ATpoint 82k
Initially posted here https://support.bioconductor.org/p/9158036/ where I suggested to put code and data and noted that GEOquery returns ar…
Answer: Post-imputation plot by LChart 3.9k
I agree that some need to be flipped (A/T and C/G where your panel frequency is 1 - ref panel frequency). There are other variants which yo…
Comment: RNA editing sites based on DNA seq and RNA seq by Adam ▴ 30
Are those 20% unaligned reads coming after hyper-editing detection?
Answer: How to find overlap of clusters in two seurat porject by Adam ▴ 30
I think your best bet would be to use annotation mapping. You can use the features of your clusters in group 1 and apply them to group 2 to…
Answer: DESeq2 processing problems by Adam ▴ 30
> when I put in the dataset, I am not able to run it for DEG analysis because system asks me to remove the first column which is of gene na…
Comment: Bacterial plasmid analysis by nicole.kavanagh • 0
Thank you so much for your quick response, I have been searching scientific papers for about a week but have failed to come up with a reaso…
Comment: Bacterial plasmid analysis by GenoMax 141k
> however I'm not sure this would be appropriate in my case as the plasmid sequences are obviously much more diverse and vary in size Can…
Answer: cnetplot category names are too long by bkleiboeker ▴ 370
I'm sure someone could find a more elegant solution using `stringr::str_wrap`, but for a one-time solution I did this: # my results of…
Comment: Telescope issue by GenoMax 141k
You could edit the SAM file but I wonder if this problem is present in your original fastq data file so if not inconvenient do the alignmen…
Comment: Mutect2 for mitochondria variant discovery by GenoMax 141k
> I keep getting error. Without providing information about the actual error no one can help. Please edit the post and add this informati…
Comment: Telescope issue by eleven11 • 0
Thank you! how would I correct that?
Comment: DESeq2 processing problems by Ram 43k
This is an open science community, not a place to write an email to Michael Love. Please address the entire community.
Comment: Post-imputation plot by kl ▴ 10
All of them are G/C and A/T variants Some seem mismatches based on AF and some seem to need flipping. I guess I am confused, as in the Mich…
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