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News: course: Population Genomic Inference from Low-coverage Whole-genome Sequencing Data
whole-genome genomics population low-coverage sequencing
updated 20 months ago by 22k • written 20 months ago by ★ 2.5k
0
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392
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News: :: FINAL CALL :: RNA-Seq Data Analysis Workshop (October 25 - 28, 2022 in Leipzig, Germany) - 2 seats left
RNA-Seq workshop transcriptomics
20 months ago by David Langenberger 11k
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0
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350
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News: Getting the most out of R course - last call
ggplot2 R tidyverse
20 months ago by carlopecoraro2 ★ 2.5k
0
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0
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434
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News: The NCTR Indel Calling from Oncopanel Sequencing Data Challenge Winners have been announced!
FDA-challenge
updated 17 months ago by 43k • written 20 months ago by ▴ 10
1
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0
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448
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News: Webinar (free) on Multimodal Single-Cell Data from winner of NeurIPS 2021
ATAC-seq CITE-seq scRNA-seq
20 months ago by Alexander ▴ 220
1
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0
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410
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News: course Reproducible Analysis With R
R Reproducibility analysis Data
20 months ago by carlopecoraro2 ★ 2.5k
10
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4
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1.0k
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News: Good morning
good morning
updated 20 months ago by 100k • written 20 months ago by 88k
6
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7
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4.3k
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News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
20 months ago by Rory Stark ★ 2.0k
0
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0
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458
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News: Sex Chromosome Evolution course
course Genomics
updated 17 months ago by 43k • written 20 months ago by ★ 2.5k
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0
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392
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News: Online training - Data visualization in R with ggplot2
Visualization ggplot2 R Data
20 months ago by carlopecoraro2 ★ 2.5k
1
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516
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News: Searching for people who can share experience (give free webinars/discuss) on multimodal single cell data
ATAC-seq CITE-seq scRNA-seq
20 months ago by Alexander ▴ 220
0
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0
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404
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News: Online training - Introduction to Deep Learning for biologists
Python DeepLearning bigdata MachineLearning
21 months ago by carlopecoraro2 ★ 2.5k
0
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0
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621
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News: 2023 EMBL Courses and Conferences
EMBL EMBLMalaria EESImaging
21 months ago by EMBL Events ▴ 10
0
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0
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428
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News: Online training -Getting the most out of R
R Science analysis Data
21 months ago by carlopecoraro2 ★ 2.5k
0
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442
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News: Online training - Cancer Genomics in R
Cancer Genomics R
updated 17 months ago by 43k • written 21 months ago by ★ 2.5k
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0
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423
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News: Online training - DNA methylation in plants and animals
OxfordNanopore DNAMethylation BSseq longreads PacBio
21 months ago by carlopecoraro2 ★ 2.5k
0
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0
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440
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News: 3rd edition of the Analysis of RNA sequencing data with R/Bioconductor course.
RNAseq Bioconductor R
22 months ago by carlopecoraro2 ★ 2.5k
4
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1
reply
2.2k
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News: 2014 ISCB Wikipedia Article Competition announcement
ISCB competition Wikipedia
written 9.8 years ago by ★ 2.0k
1
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2
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929
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News: Online training - Introduction to Nextflow
Bionfirmatics Pipeline Workflow Netflow
21 months ago by carlopecoraro2 ★ 2.5k
4
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1
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662
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News: Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop ngs data-analysis
updated 22 months ago by 43k • written 22 months ago by 11k
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0
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493
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News: Final Call! Tomorrow (7/8) is the Deadline for Phase 1 submissions of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 17 months ago by 43k • written 22 months ago by ▴ 10
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512
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News: Automate your NGS data analyses and create reproducible/scalable pipelines with NextFlow
pipeline Nextflow automation
22 months ago by David Langenberger 11k
0
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1
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1.0k
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News: Hands-On RNA-Seq Data Analysis Workshop in Leipzig, Germany (October 25-28, 2022)
RNA-Seq Transcriptomics NGS Workshop
22 months ago by David Langenberger 11k
0
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3
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1.3k
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News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 17 months ago by 43k • written 23 months ago by ▴ 10
0
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0
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429
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News: EBI Competency Hub Supporting competency-based training and professional development.
ebi carreer
22 months ago by Pierre Lindenbaum 161k
0
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0
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435
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News: Introduction to Statistics in R for biologists
tydeverse R Statistics
22 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
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433
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News: Data analysis with the Tidyverse in July (18th-21st).
Visualization R Tidyverse data-analysis
updated 22 months ago by 43k • written 22 months ago by ★ 2.5k
1
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0
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465
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News: Use your standard DNA variant caller for SNP calling in Bisulfite-Seq data
bisulfite BS-Seq methylation
23 months ago by David Langenberger 11k
0
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0
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481
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News: online training - Data Visualization with Python
Python Data-Visualization
updated 22 months ago by 43k • written 23 months ago by ★ 2.5k
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0
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563
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News: Cellosaurus release 42 is available
line cell biocuration knowledgebase database
23 months ago by Amos Bairoch ▴ 120
0
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413
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News: Online course- Reproducibility in Bioinformatics - 11-13 July
Docker Reproducibility
updated 17 months ago by 43k • written 23 months ago by ★ 2.5k
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0
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454
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News: Online statistics courses
R statistics
23 months ago by carlopecoraro2 ★ 2.5k
0
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1
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627
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News: API for accessing SARS-COV-2 genomic data
rpackage sars genomics api covid
updated 23 months ago by 142k • written 23 months ago by • 0
2
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0
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551
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News: UniProt: Annotation of biologically relevant ligands using ChEBI
binding protein site metal uniprot chebi
23 months ago by Elisabeth Gasteiger ★ 2.4k
3
votes
0
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623
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News: Tutorial on SemiBin (metagenonomics binning tool). June 14 - online
metagenomics binning
updated 23 months ago by 142k • written 23 months ago by ▴ 60
0
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0
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441
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News: Nanopore direct RNA Sequencing - online course
Sequencing direct Nanopore RNA
24 months ago by carlopecoraro2 ★ 2.5k
0
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0
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396
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News: ONLINE COURSE - LINEAR MIXED MODELS IN R - September 26th-30th
Models Mixed R
24 months ago by carlopecoraro2 ★ 2.5k
7
votes
1
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689
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News: NGSymposium - Conference in Computational Biology, 23-24.09
ML statistics conference ngschool
24 months ago by kzkedzierska ▴ 290
0
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0
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485
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News: ONLINE course "Population genomic inference from low-coverage whole-genome sequencing data"
lcWGS Genomics Population
2.0 years ago by carlopecoraro2 ★ 2.5k
0
votes
0
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450
views
News: Online course - Metabarcoding in microbial Ecology
Qiime2 Metabarcoding Microbial-Ecology
updated 17 months ago by 43k • written 2.0 years ago by ★ 2.5k
3
votes
1
reply
629
views
News: Free web seminars related to small non-coding RNA bioinformatics
smallRNA microRNA
updated 17 months ago by 43k • written 2.0 years ago by ▴ 60
0
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0
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468
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News: ONLINE COURSE - RADseq data analysis using Stacks
Phylogenomics Population RADseq Genomics Stacks
24 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
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423
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News: Online course - Developing R/Bioconductor packages for genomics
Bioconductor R
updated 17 months ago by 43k • written 2.0 years ago by ★ 2.5k
1
vote
0
replies
588
views
News: Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge is now live!
oncopanel indel-calling
updated 17 months ago by 43k • written 2.0 years ago by ▴ 10
0
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2
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838
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News: ClusteredNR NCBI BLAST database provides faster searches and more informative BLAST results
NCBI BLAST
2.0 years ago by PeterC_NCBI ▴ 410
0
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0
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384
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News: NCBI poster at Bio-IT World on the new cloud BLAST tool, ElasticBLAST
NCBI BLAST ElasticBLAST
2.1 years ago by PeterC_NCBI ▴ 410
1
vote
0
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439
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News: DATA ANALYSIS WITH THE TIDYVERSE in July (18th-21st).
tidyverse data R analysis
2.1 years ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
550
views
News: Introduction to Nextflow course
Nextflow
2.1 years ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
538
views
News: Online Course - A Practical Introduction to NGS Data Analysis (May 16-18, 2022)
NGS RNA DNA Workshop
2.1 years ago by David Langenberger 11k
6
votes
0
replies
578
views
News: NGSchool2022: Machine Learning in Computational Biology
summer machine learning school ngschool ML statistics
2.1 years ago by kzkedzierska ▴ 290
1,000 results • Page 7 of 20
Recent Votes
constructing pangenome through psvcp
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Answer: RNAseq coverage vs depth for transcript isoform expression?
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
C: How can I perform Differential expression analysis with just one control and one
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Comment: constructing pangenome through psvcp by analyst ▴ 50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by GenoMax 142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R by 1769mkc ★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks by ATpoint 82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner by Joe 21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression? by Gordon Smyth ★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Table 1 o…
Comment: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA by mavy ▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object by Alex Reynolds 35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF) by aidangcruickshank ▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data? by Ngrin • 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2 by swbarnes2 14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot by LauferVA 4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
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