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1,000 results • Page
3 of 20
Sort: Votes
Rank
Views
Votes
Replies
4
votes
7
replies
798
views
Help with weighted nearest neighbor analysis
seurat
single-cell
8 months ago by
Chris
▴ 260
4
votes
6
replies
1.1k
views
Pre-processing for single cell RNAseq: Hard thresholds, data (cluster)-driven or both?
scRNA-seq
updated 6 months ago by
yl759
▴ 120 • written 7 months ago by
psm
▴ 130
4
votes
11
replies
1.8k
views
PCA WITH PLINK
PLINK
updated 8 months ago by
Kevin Blighe
87k • written 8 months ago by
Michelle Guerra
• 0
4
votes
6
replies
2.1k
views
Single nucleotide Polymorphism (SNP)
SNP
updated 10 months ago by
Ram
43k • written 9.0 years ago by
Harish Sanja
▴ 10
4
votes
6
replies
1.0k
views
Python script to automatically read in, name output files & parse R1 & R2 fastq.gz files when given an input directory with raw data files
python
fastq
9 months ago by
eorr
▴ 30
4
votes
5
replies
1.0k
views
VEP run with --af_gnomadg refuses to provide allele frequencies for extremely rare variants
vep
gnomad
updated 8 months ago by
Louisse_Ensembl
▴ 60 • written 8 months ago by
Jeremy Leipzig
22k
4
votes
8
replies
1.2k
views
Error executing nf-core/metaboigniter pipeline
nf-core
metaboigniter
nextflow
updated 8 months ago by
Phil Ewels
★ 1.4k • written 8 months ago by
eesha28112001
• 0
4
votes
2
replies
471
views
KEGG DATABASE
DATABASE
KEGG
updated 4 months ago by
jv
★ 1.8k • written 4 months ago by
Sijjil
• 0
4
votes
11
replies
1.6k
views
Check Strandedness
Check_Strandedness
how_are_we_stranded_here
leafcutter
bash
updated 6 months ago by
Brian Bushnell
20k • written 8 months ago by
Y
• 0
4
votes
3
replies
313
views
Getting less DE genes when incorporating all samples
RNA-seq
differential-expression
deseq2
updated 10 weeks ago by
jv
★ 1.8k • written 10 weeks ago by
shome
▴ 10
4
votes
3
replies
727
views
Why is there a big difference between the outputs of `geneBody_coverage` of `RSeQC` when using different bed files?
RSeQC
11 months ago by
Dan
▴ 180
4
votes
2
replies
627
views
Visualization package for Maf Files using Python
Python
maftools
Visualization
MAF
updated 6 months ago by
Mark
★ 1.5k • written 6 months ago by
Manuel Sokolov Ravasqueira
▴ 100
4
votes
3
replies
754
views
Creating custom GTF file for use with Cellranger with barcode sequences
Cellranger
7 months ago by
stefano.iantorno
▴ 70
4
votes
8
replies
1.8k
views
Error while running nf-core/rnaseq pipeline
nf-core
RNA-seq
11 months ago by
eesha28112001
• 0
4
votes
6
replies
633
views
Unexpected separation of RNA-seq samples on PCA plot
depletion
PCA
rRNA
plot
RNA-seq
5 months ago by
Tihana
▴ 10
4
votes
14
replies
2.7k
views
Is it possible to annotate single genes by snpeff
snp
vcf
updated 10 months ago by
Ram
43k • written 6.7 years ago by
misbahabas
▴ 70
4
votes
5
replies
1.1k
views
STAR mapping - regarding output files content
STAR
RNA-seq
mapping
updated 8 months ago by
rfran010
▴ 900 • written 8 months ago by
Manko47
• 0
4
votes
5
replies
385
views
Filter out miRNA from ncRNA dataset
bowtie
bowtie2
miRNA
filtering
ncRNA
updated 9 weeks ago by
ATpoint
82k • written 9 weeks ago by
binaryCode
▴ 10
4
votes
6
replies
2.6k
views
Convert Nanopore Fast5 files to Fasta format
fast5
fasta
Nanopore
11 months ago by
Sowmya Pulapet
▴ 70
4
votes
8
replies
1.9k
views
Hello, I have differential ATAC-seq from control and diseased cells (H3K27ac mark as chromatin mark) and wondering how to call enhancers using ROSE …
super-enhancers
Enhancers
updated 12 weeks ago by
jared.andrews07
★ 16k • written 3 months ago by
Manhezz
• 0
4
votes
5
replies
1.2k
views
tranfering sam file easy and fast way
SAM
RNA-seq
hisat2
updated 8 months ago by
Ram
43k • written 2.3 years ago by
iamsmor
• 0
4
votes
2
replies
231
views
Trying to write bwa mem -> samtools view -> samtools sort loop
bwa
samtools
mapping
genome
updated 23 days ago by
Pierre Lindenbaum
161k • written 23 days ago by
Lee
• 0
4
votes
7
replies
568
views
Can any JBrowse2 tracks show multiple colors for reads at different nucleotide positions?
JBrowse
JBrowse2
updated 25 days ago by
cmdcolin
★ 3.8k • written 29 days ago by
I0110
▴ 140
4
votes
4
replies
494
views
Correlation for ATAC-Seq and Chip-Seq
RNA-Seq
Chip-Seq
ATAC-Seq
8 weeks ago by
qudrat.nii
▴ 10
4
votes
3
replies
1.0k
views
What is the difference between vst and rlog to perform PCA ?
rlog
PCA
vsd
updated 11 months ago by
ATpoint
82k • written 11 months ago by
Amr
▴ 160
4
votes
9
replies
1.2k
views
Snakemake issue with wrappers
Python
Snakemake
5 months ago by
Begonia_pavonina
▴ 150
4
votes
9
replies
1.0k
views
bcl2fastq troubleshooting all reads dumped to "Undetermined"
demultiplex
illumina
sequencing
updated 4 months ago by
GenoMax
141k • written 4 months ago by
MaxF
▴ 120
4
votes
6
replies
840
views
bwa mem hangs after a few thousand reads
bwa
alignment
variant-calling
bwa-mem
updated 25 days ago by
Ram
43k • written 5 months ago by
cee28
▴ 30
4
votes
9
replies
2.6k
views
Blast+ remote database names
blast
remote
databases
Blastplus
updated 9 months ago by
GenoMax
141k • written 2.3 years ago by
Komalharini
• 0
4
votes
7
replies
1.0k
views
Statistical test to compare data across timepoints
Statistics
updated 6 months ago by
Matthias Zepper
4.5k • written 6 months ago by
Sean
▴ 20
4
votes
6
replies
1.8k
views
Failure in installing the ggtree, enrichplot, and ggtree (Bioconductor packages )
Bioconductor
updated 9 months ago by
GenoMax
141k • written 9 months ago by
applepie
• 0
4
votes
4
replies
3.3k
views
Unable to install Autogrid4
autogrid
software-error
autogrid4
updated 11 months ago by
Ram
43k • written 3.2 years ago by
roybatty269
• 0
4
votes
5
replies
538
views
Which refseq_protein db to choose for zingiberaceae
local
blastp
blast
updated 8 months ago by
GenoMax
141k • written 8 months ago by
Nilo
• 0
4
votes
7
replies
813
views
SNP IDs
SNP
5 months ago by
kl
▴ 10
4
votes
14
replies
1.1k
views
remove white space in fastq file
fastq
updated 4 months ago by
GenoMax
141k • written 4 months ago by
gkarere
• 0
4
votes
6
replies
1.2k
views
Transcript quantification
rna-seq
transcriptome
SRA
updated 10 months ago by
ATpoint
82k • written 10 months ago by
firefox91
• 0
4
votes
3
replies
590
views
Over Representation analysis altered pathways in common between comparisons plot
R
Visualization
DGE
ORA
updated 6 months ago by
Basti
★ 2.0k • written 6 months ago by
Manuel
▴ 10
4
votes
7
replies
556
views
DESeq2 Multifactor Design
RNA-seq
DESeq2
updated 14 days ago by
Ram
43k • written 15 days ago by
AHerik
▴ 20
4
votes
12
replies
3.5k
views
How to read VCF (v4.1) file? (student project) (samtools version 0.1.19)
variant-calling
samtools
VCF
BCF
updated 4 weeks ago by
Ram
43k • written 5.5 years ago by
c.clarido
▴ 110
4
votes
16
replies
1.8k
views
How to subset large BAM files specifically/ extract specific subsets?
bamtools
RNAseq
samtools
BAM
updated 9 weeks ago by
Ram
43k • written 7 months ago by
ella
• 0
4
votes
6
replies
804
views
how to plot SV(structural variants) from many assemblies of a given locus
SV
11 months ago by
natalev
▴ 20
4
votes
3
replies
592
views
Identifying enhancers that regulate certain genes
enhancers
updated 9 months ago by
rfran010
▴ 900 • written 9 months ago by
Rozita
▴ 40
4
votes
6
replies
936
views
How to pass from DNA to AA fasta
genetics
updated 11 months ago by
Buffo
★ 2.4k • written 11 months ago by
Anderson Stiward
• 0
4
votes
2
replies
563
views
Can I still remove ambient RNA if I do not have raw barcode-gene matrix?
SoupX
6 months ago by
malonzm1
▴ 20
4
votes
8
replies
2.0k
views
How to extract promoter sequences from a plant draft genome?
promoter
genome
updated 11 months ago by
Ram
43k • written 4.6 years ago by
Kumar
▴ 120
4
votes
13
replies
1.0k
views
Mapping FASTQ files of scRNA-seq to reference genome
star
EBI
cellranger
scRNA-seq
SRA
updated 3 months ago by
Ram
43k • written 3 months ago by
Researcher
▴ 20
4
votes
6
replies
880
views
Hisat2 index and alignment question
ubuntu
rna-seq
index
hisat2
updated 7 months ago by
Istvan Albert
100k • written 7 months ago by
Athena
• 0
4
votes
6
replies
341
views
Protein loops
protein
Loop
6 weeks ago by
Curious
▴ 10
4
votes
4
replies
795
views
Segmentation fault Biopython pairwise alignment
biopython
alignment
updated 11 months ago by
Joe
21k • written 11 months ago by
antoine.fauchois92
▴ 20
4
votes
9
replies
574
views
variant calling
variant-calling
updated 24 days ago by
Ram
43k • written 25 days ago by
dalibenam64
• 0
1,000 results • Page
3 of 20
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