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questions
3
votes
8
replies
6.4k
views
6 follow
Download CAZy database
genome
gene
database
cazy
updated 8 weeks ago by
GenoMax
142k • written 6.2 years ago by
anu014
▴ 190
0
votes
0
replies
407
views
MaxQuant - second peptide search
peptide-search
proteome
maxquant
updated 10 months ago by
Ram
43k • written 10 months ago by
anu014
▴ 190
2
votes
4
replies
1.8k
views
Universal Operon Database
genome
gene
database
updated 2.2 years ago by
rrapopor
▴ 40 • written 6.5 years ago by
anu014
▴ 190
3
votes
5
replies
7.4k
views
6 follow
Where can I find mouse Gene MatriX file format (GMT)?
gene
RNA-Seq
next-gen
updated 2.9 years ago by
Zeynab
• 0 • written 6.3 years ago by
anu014
▴ 190
3
votes
6
replies
2.8k
views
User-defined coverage in CollectHsMetrics [Picard]
next-gen
picard
coverage
broadinstitute
updated 3.2 years ago by
sh001
• 0 • written 6.9 years ago by
anu014
▴ 190
3
votes
7
replies
2.0k
views
Beta calculation & soft thresholding in WGCNA
gene
Network
next-gen
Langfelder
updated 11 months ago by
Ram
43k • written 4.2 years ago by
anu014
▴ 190
4
votes
4
replies
5.8k
views
VQSRTranche filters in GATK
gatk
next-gen
SNP
updated 4.8 years ago by
Nawar
• 0 • written 6.4 years ago by
anu014
▴ 190
3
votes
4
replies
3.6k
views
Narrow & Broad peaks from 'macs2 bdgdiff'
ChIP-Seq
macs2
peakcalling
next-gen
sequencing
updated 5.3 years ago by
John Ma
▴ 310 • written 6.7 years ago by
anu014
▴ 190
3
votes
9
replies
8.1k
views
bowtie2-align exited with value 139
software error
next-gen
alignment
Assembly
bowtie2
updated 5.3 years ago by
msg
▴ 10 • written 6.6 years ago by
anu014
▴ 190
10
votes
4
replies
2.3k
views
Neoantigen prediction Tools
next-gen
alignment
SNP
5.4 years ago by
anu014
▴ 190
2
votes
2
replies
2.1k
views
Integration of Chip-seq and RNA-Seq data
rna-seq
ChIP-Seq
next-gen
5.4 years ago by
anu014
▴ 190
4
votes
7
replies
3.7k
views
Plot lines color change in plotAvgProf2 [ChIPseeker]
R
ChIP-Seq
ChIPseeker
updated 5.5 years ago by
zx8754
11k • written 5.5 years ago by
anu014
▴ 190
6
votes
6
replies
2.6k
views
2 peak files in plotAvgProf2 [ChIPseeker]
ChIP-Seq
R
ChIPseeker
Bioconductor
updated 5.6 years ago by
zx8754
11k • written 5.6 years ago by
anu014
▴ 190
8
votes
6
replies
5.6k
views
Annovar result explanation
annotation
SNP
next-gen
ANNOVAR
updated 5.7 years ago by
tannerkoomar
▴ 50 • written 6.8 years ago by
anu014
▴ 190
0
votes
2
replies
1.0k
views
Using wig2array from iSeeRNA
RNA-Seq
genome
next-gen
updated 5.7 years ago by
hellosunking
• 0 • written 5.9 years ago by
anu014
▴ 190
0
votes
0
replies
1.2k
views
Crosstalk between KEGG pathways
gene
genome
sequence
kegg
5.7 years ago by
anu014
▴ 190
2
votes
2
replies
1.2k
views
Applying Steiner minimal tree algorithm in Cytoscape
gene
cytoscape
ppi
updated 5.8 years ago by
gary.bader
▴ 20 • written 5.8 years ago by
anu014
▴ 190
0
votes
0
replies
1.2k
views
Vertices name in steinertree [R]
gene
PPI
graph
5.8 years ago by
anu014
▴ 190
3
votes
2
replies
2.0k
views
Cytoscape's plugin 'stringApp' error
software error
gene
cytoscape
updated 5.9 years ago by
xanderpico
▴ 540 • written 6.0 years ago by
anu014
▴ 190
1
vote
1
reply
2.7k
views
Installing Seurat for scRNA
rna-seq
software error
R
updated 6.0 years ago by
GenoMax
142k • written 6.0 years ago by
anu014
▴ 190
3
votes
4
replies
2.9k
views
Removal of ERCC spike-in in RNA-Seq
RNA-Seq
Assembly
alignment
updated 3 months ago by
Daniel
▴ 30 • written 6.0 years ago by
anu014
▴ 190
5
votes
3
replies
3.5k
views
NovaSeq data analysis
next-gen
alignment
assembly
sequencing
updated 6.0 years ago by
GenoMax
142k • written 6.0 years ago by
anu014
▴ 190
0
votes
1
reply
2.0k
views
Difference in number of peaks called
ChIP-Seq
macs2
peakcalling
updated 6.1 years ago by
colindaven
6.4k • written 6.9 years ago by
anu014
▴ 190
0
votes
4
replies
1.3k
views
Statistics between 3 sets of genes
gene
genome
statistics
R
updated 6.2 years ago by
Nicolas Rosewick
11k • written 6.2 years ago by
anu014
▴ 190
0
votes
8
replies
2.2k
views
How to get Gene symbols & nuclotide FASTA for taxid :1239
gene
sequence
genome
updated 6.2 years ago by
tdmurphy
▴ 190 • written 6.2 years ago by
anu014
▴ 190
0
votes
2
replies
1.6k
views
Getting MDSplot from Cufflinks data [cummeRbund]
rna-seq
R
next-gen
updated 6.3 years ago by
Kevin Blighe
88k • written 6.3 years ago by
anu014
▴ 190
1
vote
4
replies
1.5k
views
GO Annotations from geneontology.org
next-gen
gene
genome
updated 6.3 years ago by
EagleEye
7.5k • written 6.3 years ago by
anu014
▴ 190
3
votes
3
replies
1.7k
views
try command in R
R
updated 6.3 years ago by
e.rempel
★ 1.1k • written 6.3 years ago by
anu014
▴ 190
1
vote
8
replies
2.4k
views
miRNA target genes prediction.
mirna
gene
R
updated 6.3 years ago by
lieven.sterck
15k • written 6.3 years ago by
anu014
▴ 190
0
votes
1
reply
1.5k
views
Features for detection of gene.
biology
gene
genome
sequence
updated 6.4 years ago by
Ian
6.0k • written 6.4 years ago by
anu014
▴ 190
4
votes
4
replies
2.3k
views
5 prime & 3 prime end of the gene in GTF
genome
sequence
gene
gencode
ensembl
6.5 years ago by
anu014
▴ 190
5
votes
3
replies
5.8k
views
Plotting TSS & TTS for Chip-seq peaks
ChIP-Seq
plot
next-gen
updated 6.5 years ago by
Simply Bioinformatics
▴ 200 • written 6.6 years ago by
anu014
▴ 190
2
votes
6
replies
1.9k
views
Difference between ncRNA & non_coding in GENCODE
SNP
genome
next-gen
gene
6.5 years ago by
anu014
▴ 190
2
votes
4
replies
2.3k
views
Motif prediction in Chip-seq data
ChIP-Seq
motif
next-gen
updated 6.5 years ago by
simon.vanheeringen
▴ 270 • written 6.6 years ago by
anu014
▴ 190
3
votes
4
replies
3.6k
views
GC & AT content calculation
ChIP-Seq
next-gen
R
genome
updated 6.5 years ago by
simon.vanheeringen
▴ 270 • written 6.5 years ago by
anu014
▴ 190
1
vote
2
replies
1.2k
views
Ori-Ter normalization [Chip-seq]
ChIP-Seq
normalize
next-gen
6.5 years ago by
anu014
▴ 190
3
votes
2
replies
1.5k
views
Correlation between Chip-seq BAMs
ChIP-Seq
next-gen
correlation
updated 6.6 years ago by
Devon Ryan
104k • written 6.6 years ago by
anu014
▴ 190
3
votes
2
replies
977
views
Tophat alignment against BALB_cJ_R
alignment
next-gen
RNA-Seq
updated 6.6 years ago by
Devon Ryan
104k • written 6.6 years ago by
anu014
▴ 190
5
votes
17
replies
4.2k
views
Subtracting one BAM [control] from another BAM [sample].
next-gen
Assembly
ChIP-Seq
updated 6.6 years ago by
Pierre Lindenbaum
161k • written 6.6 years ago by
anu014
▴ 190
0
votes
1
reply
1.7k
views
Motif prediction in Bacteria species using HOMER [Chip-seq]
motif
chip-seq
next-gen
genome
updated 6.6 years ago by
Biostar
20 • written 6.7 years ago by
anu014
▴ 190
0
votes
1
reply
1.9k
views
Normalisation using Input DNA & calling peaks [Chip-seq]
ChIP-Seq
next-gen
normalization
macs2
6.7 years ago by
anu014
▴ 190
7
votes
5
replies
2.4k
views
UTR size range for 5' UTR & 3' UTR variants
gene
sequence
biology
variant
updated 6.7 years ago by
Emily
23k • written 6.7 years ago by
anu014
▴ 190
8
votes
4
replies
1.8k
views
Localise up-regulated & down-regulated genes across the genome
plot
RNA-Seq
R
updated 10 months ago by
Ram
43k • written 6.9 years ago by
anu014
▴ 190
4
votes
3
replies
4.5k
views
Visualising BedGraph files on UCSC [custom tracks]
visualisation
bedgraph
ucsc
genome
updated 6.9 years ago by
Arup Ghosh
3.2k • written 6.9 years ago by
anu014
▴ 190
10
votes
7
replies
3.9k
views
Chip-seq peak annotation [Chipseeker]
ChIP-Seq
chipseeker
peak
annotation
updated 6.9 years ago by
Guangchuang Yu
★ 2.6k • written 6.9 years ago by
anu014
▴ 190
0
votes
0
replies
1.2k
views
Using Zagros & understanding its results
ChIP-Seq
software error
clip-seq
next-gen
updated 6.9 years ago by
Biostar
20 • written 7.7 years ago by
anu014
▴ 190
4
votes
3
replies
1.6k
views
UCSC genome viewer for non-model organism
ChIP-Seq
alignment
visualization
bed
updated 6.9 years ago by
Pierre Lindenbaum
161k • written 6.9 years ago by
anu014
▴ 190
11
votes
8
replies
4.7k
views
Single-end control & Paired-end sample in Chip-seq
ChIP-Seq
macs
peakcalling
updated 7.0 years ago by
Devon Ryan
104k • written 7.0 years ago by
anu014
▴ 190
1
vote
0
replies
1.7k
views
Window size for MEDIPS
medips
medip-seq
peakcalling
sequencing
7.0 years ago by
anu014
▴ 190
0
votes
0
replies
1.1k
views
Stacks: Map types in genotypes program
next-gen
genome
genotyping
SNP
software error
7.2 years ago by
anu014
▴ 190
58 results • Page
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