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Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
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Mensur Dlakic
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For posterity, here is `nvidia-smi` output for our cluster:
```
+-------------------------------------------------------------------------…
Answer: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
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How often do we get a chance to help @yokofakun after all the help Pierre has provided? I feel like we have to make a serious effort here.
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I am having the same issue with the same situation, so i do not understand what could be the problem...i do not know if you finally figure …
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@genomax I'm using the 'GPU' queue of my cluster (SLURM). The very same config was used with another parabrick subtool and I got not probl…
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Are you running this under a job scheduler? Is there a separate partition for the GPU's/are they accessible to the scheduler?
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Are the batches biological replicates?
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If you want to save time at the cost of having a lesser understanding of how bioinformatic programs work, you may study through the BioStar…
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I would recommend, in the following order:<br>
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For what is worth, in a previous project, I have done some tests on different hierarchical clustering methods for single cell RNAseq.
I had…
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"ward.D2" -- top of the pops in terms of interpretatble clusters from gene expression data in my hands, the rest is...often crytpic.
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I'd expect to see more or less what they see in your reference. Somewhere between half and two thirds of reads mapping to exons. The low fr…
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As the whole presentation relies on a distance matrix and elements aggregation by hierarchical clustering, it would be helpful to better un…
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> Read in data
Add an example of what is in `data.csv`.
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