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121,831 results • Page
598 of 2437
Sort: Rank
Rank
Views
Votes
Replies
3
votes
2
replies
1.3k
views
How to perform DESEQ2 analysis when there are three treatments (one of them being a reference)?
comparisons
DESEQ2
expression
multiple
differential
analysis
4.1 years ago by
mrj
▴ 180
0
votes
6
replies
3.4k
views
fgsea result "size" parameter - can I pull out size of the original pathway?
GSEA
fgsea
pathway
R
updated 4.1 years ago by
alserg
★ 1.0k • written 4.1 years ago by
garfield320
▴ 20
0
votes
2
replies
1.4k
views
[Biopython] endweight, endopen and endextend equivalent for Bio.Align.PairwiseAligner()
alignment
Needle
Biopython
4.1 years ago by
gaspanic987
• 0
4
votes
1
reply
1.7k
views
Ensembl Homology: Human orthologs of mouse genes labled "many2many" but correspond to a single mouse ortholog
homology
Ensembl
updated 4.1 years ago by
Michal @Ensembl
▴ 270 • written 4.3 years ago by
adam.faranda
▴ 110
2
votes
12
replies
7.0k
views
Trying to read multiple CSV files in a folder and add filename to each column in R
R
Merging
4.1 years ago by
mxz707
• 0
0
votes
1
reply
916
views
How to sum/merge two hicpro raw matrices in python/r
matrices
hic
updated 4.1 years ago by
cpad0112
21k • written 4.1 years ago by
TheCatalyst
• 0
0
votes
0
replies
541
views
analyzing copy number variation in sunflower with cn.mops
cn.mops
copy.number.variation
4.1 years ago by
ziv_attia
• 0
3
votes
1
reply
3.0k
views
Mitochondrial percentage in Seurat
Seurat
R
updated 3.5 years ago by
rohitsatyam102
▴ 940 • written 4.1 years ago by
zizigolu
★ 4.4k
0
votes
10
replies
2.1k
views
ImputewithPHG_main:fastq
PHG
updated 4.1 years ago by
GenoMax
153k • written 4.1 years ago by
bp
• 0
0
votes
1
reply
571
views
Pairwise comparison of AA fasta files which contain multiple domains
R
updated 4.1 years ago by
Mensur Dlakic
★ 29k • written 4.1 years ago by
MaheJaan
• 0
0
votes
0
replies
699
views
Is there an easily implementable analysis (R based) for copy number, ROH, mosaicism, and ploidy in R using Illumina 850K SNP array data?
Illumina
array
Omni
SNP
850K
data
4.1 years ago by
Jng
• 0
1
vote
4
replies
1.9k
views
Does scRNA-seq Tabula Sapiens store: counts or log2( 1+counts ) or most probably something else ?
scRNA-seq
scRNAseq
TabulaSapiens
4.1 years ago by
Alexander
▴ 220
1
vote
2
replies
608
views
jActiveModules - alternative.
cytoscape
4.1 years ago by
rin
▴ 40
1
vote
6
replies
2.6k
views
Has anyone here gotten Segmentation Faults when trying to use Clustal Omega?
Clustal
segmentation_fault
updated 4.1 years ago by
Joe
22k • written 4.1 years ago by
crisstyl
▴ 10
1
vote
6
replies
4.9k
views
Preparing ChIP-seq data for analysis with DESeq2
DESeq2
ChIP-seq
updated 3.7 years ago by
tom
• 0 • written 4.3 years ago by
gkunz
▴ 30
5
votes
7
replies
9.5k
views
put data into tertile groups in Excel
excel
4.1 years ago by
Nona
▴ 90
1
vote
0
replies
745
views
How to extract intergenic regions
intergenic
region
4.1 years ago by
Ak
▴ 60
3
votes
1
reply
1.0k
views
Is reclustering of a cluster obtained from hierarchical clustering "allowed"?
analysis
cluster
hierarchical
clustering
updated 4.1 years ago by
German.M.Demidov
★ 3.0k • written 4.1 years ago by
Jonathan Lefebre
▴ 70
0
votes
0
replies
660
views
How to easily summarize counts from different exon under the same gene
featureCounts
gene
exon
updated 4.1 years ago by
ATpoint
89k • written 4.1 years ago by
wang-yanfang
• 0
0
votes
0
replies
488
views
how to select SNPs at regular intervals based on their physical positions?
R
4.1 years ago by
blacktomato27
▴ 70
0
votes
0
replies
555
views
Differential expression to compare genes between brain regions (Allen Mouse Brain Atlas)
expression
differential
comparison
allen
atlas
4.1 years ago by
dekel
▴ 10
0
votes
0
replies
884
views
Job:
Bioinformatician | Clinical Data | Newcastle UK
next-gen
RNA-Seq
medicine
clinical
variant
4.1 years ago by
dasha.deen
• 0
12
votes
7
replies
10k
views
clusterprofiler: How to extract genes of a specific GO-term/pathway
clusterprofiler
GO-term
goterm
go term analysis
updated 2.2 years ago by
FatihSarigol
▴ 260 • written 5.1 years ago by
ccha97
▴ 60
9
votes
10
replies
3.1k
views
problem with no replicate data analysis
RNA-Seq
updated 3.2 years ago by
Ram
45k • written 4.1 years ago by
Bioinformatics1
▴ 10
2
votes
1
reply
2.0k
views
Using vcftools and got Error: Unknown option: --max-missing
vcftools
updated 4.1 years ago by
samuelandjw
▴ 270 • written 4.1 years ago by
pmiller
▴ 10
3
votes
2
replies
4.3k
views
UMI counts and read counts in GeneGlobe output
UMI
GeneGlobe
4.1 years ago by
Abhishek
• 0
0
votes
0
replies
919
views
DESeq2: difficulty with contrasts and main effects
phyloseq
DESeq2
updated 4.1 years ago by
ATpoint
89k • written 4.1 years ago by
Mir
• 0
2
votes
1
reply
1.7k
views
how to adjust deeptools computeMatrix graph
bigwig
deeptools
heatmap
updated 4.1 years ago by
Friederike
9.0k • written 4.1 years ago by
alan
▴ 10
0
votes
14
replies
2.8k
views
analyzing cel files
chip
snp
updated 4.1 years ago by
benformatics
4.2k • written 4.1 years ago by
scipio04
• 0
0
votes
3
replies
1.2k
views
What is the best way to get all bacteria proteins from nr?
protists
database
nr
updated 4.1 years ago by
GenoMax
153k • written 4.1 years ago by
O.rka
▴ 750
3
votes
7
replies
3.6k
views
6 follow
Online BLAST search using R
BLAST
R
updated 18 months ago by
SequenceServer
▴ 150 • written 4.1 years ago by
accibio
▴ 20
2
votes
5
replies
2.9k
views
rRNA rate from RNA seq data- Qualimap
quality-control
Qualimap
RNAseq
4.1 years ago by
Ahmed.waraky
▴ 10
0
votes
1
reply
830
views
RNAseq quality control-rRNA rate
rRNA
rate
RNAseq
updated 4.1 years ago by
Ram
45k • written 4.1 years ago by
Ahmed.waraky
▴ 10
0
votes
1
reply
1.1k
views
Finding lncRNA using cufflinks
lncRNA
cuffcompare
cufflinks
updated 4.1 years ago by
Ram
45k • written 4.1 years ago by
bart
▴ 50
0
votes
2
replies
1.1k
views
RNA-SeQC
RNA-SeQC
RNAseq
updated 4.1 years ago by
opplatek
▴ 300 • written 4.1 years ago by
Ahmed.waraky
▴ 10
1
vote
0
replies
391
views
Determining genes that varying along disease trajectory
rna-seq
4.1 years ago by
sobethon
▴ 10
0
votes
0
replies
516
views
Dispersion in read numbers
FASTQ
RNA-seq
BAM
updated 4.1 years ago by
Ram
45k • written 4.1 years ago by
Gotumbtai
▴ 10
1
vote
1
reply
1.0k
views
kraken2 read assignment: difference between G and G1?
unclassified
kraken2
genus
4.1 years ago by
cjb
▴ 10
1
vote
2
replies
1.3k
views
RNASEQ differential expression of paired samples
Differential-expression
RNASEQ
4.1 years ago by
hans
▴ 20
13
votes
8
replies
2.9k
views
6 follow
Forum:
Why do bioinformatics scientists collaborate and why that's good for science?
Bioinformatics
updated 4.1 years ago by
Istvan Albert
103k • written 4.1 years ago by
MAPK2
▴ 50
0
votes
10
replies
2.4k
views
Qualitative Comparison of 2 scRNAseq analyses
Seurat
scRNA
mt.reads
4.1 years ago by
ConfusedSheep
▴ 10
0
votes
1
reply
824
views
Filter peaks based on coverage
eCLIP
ChIP-seq
updated 4.1 years ago by
Nitin Narwade
★ 1.7k • written 4.1 years ago by
kstangline
▴ 100
0
votes
3
replies
2.9k
views
Error with installing CrossMap
CrossMap
updated 4.1 years ago by
Ram
45k • written 4.5 years ago by
ellenbdrake30
• 0
1
vote
2
replies
1.3k
views
Remove adpater from reads
trimming
adpater
cutadapt
updated 4.1 years ago by
gb
★ 2.2k • written 4.1 years ago by
priya.bmg
▴ 70
3
votes
3
replies
1.8k
views
What QC measures to look for when performing deconvolution?
QC
CibersortX
deconvolution
updated 3.7 years ago by
Shicheng Guo
★ 9.6k • written 4.1 years ago by
Aspire
▴ 390
3
votes
4
replies
3.5k
views
the --fraction option of featureCounts
RNA-Seq
featureCounts
rna-seq
genome
sequencing
4.1 years ago by
Apex92
▴ 320
1
vote
1
reply
1.6k
views
Need some help with next steps after getting fGSEA results from Microarray data.
microarray
differential expression analysis
fGSEA
updated 4.1 years ago by
charlielonergan
▴ 20 • written 4.9 years ago by
biotrekker
▴ 110
0
votes
0
replies
3.2k
views
Seurat object
seuratobject
seurat
updated 4.1 years ago by
Friederike
9.0k • written 4.1 years ago by
lsudupe
▴ 20
0
votes
1
reply
762
views
Does genes for different subunits of a protein have different KO IDs?
kegg
updated 4.1 years ago by
andres.firrincieli
3.9k • written 4.1 years ago by
dpc
▴ 250
0
votes
4
replies
2.3k
views
how to speed up SNP calling using bcftools
bcftools
updated 4.1 years ago by
Ram
45k • written 4.1 years ago by
Chenfei Zheng
▴ 60
121,831 results • Page
598 of 2437
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Answer: Split chromosome into smaller fragments to save memory when build xg and gcsa in
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Answer: CBioPortal: What does Mutation type: Targeted_Region means?
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Comment: how to start
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Comment: Split chromosome into smaller fragments to save memory when build xg and gcsa in
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李经纬
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Thank you. Even if I build the XG index after some modifications, the building of gcsa failed even on a single chromosome. Even though I h…
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
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★ 29k
For posterity, here is `nvidia-smi` output for our cluster: ``` +-------------------------------------------------------------------------…
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How often do we get a chance to help @yokofakun after all the help Pierre has provided? I feel like we have to make a serious effort here. …
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I am having the same issue with the same situation, so i do not understand what could be the problem...i do not know if you finally figure …
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Are you running this under a job scheduler? Is there a separate partition for the GPU's/are they accessible to the scheduler?
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Are the batches biological replicates?
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If you want to save time at the cost of having a lesser understanding of how bioinformatic programs work, you may study through the BioStar…
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I would recommend, in the following order:<br> 1) Go through Bioinformatics Algorithms, either as a video course or as a book, and do all e…
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For what is worth, in a previous project, I have done some tests on different hierarchical clustering methods for single cell RNAseq. I had…
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"ward.D2" -- top of the pops in terms of interpretatble clusters from gene expression data in my hands, the rest is...often crytpic.
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I'd expect to see more or less what they see in your reference. Somewhere between half and two thirds of reads mapping to exons. The low fr…
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6.4k
As the whole presentation relies on a distance matrix and elements aggregation by hierarchical clustering, it would be helpful to better un…
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