Limit : all time
all time today this week this month this year
121,901 results • Page 627 of 2439
Sort: Rank
Rank Views Votes Replies
1
vote
2
replies
2.9k
views
annotate VCF file with LRG ?
LRG vcf annotation
updated 3.8 years ago by 45k • written 11.2 years ago by ▴ 600
1
vote
11
replies
3.0k
views
Blast 2.11 not blasting all sequences in a file?
blast
4.2 years ago by DNAngel ▴ 260
0
votes
5
replies
1.4k
views
Dock image for transcriptomics assembly
transcriptomics docker
updated 4.2 years ago by 45k • written 4.2 years ago by ▴ 50
0
votes
0
replies
2.2k
views
Why are there two peaks in per sequence GC content plot from FastQC report?
distribution WGS sequencing GC Illumina
4.2 years ago by Meng • 0
0
votes
4
replies
3.2k
views
Defining the threshold for reads and features
scRNA-seq
4.2 years ago by zizigolu ★ 4.4k
0
votes
1
reply
1.5k
views
import metaphlan3 output to Phyloseq
Phyloseq metagenomics MetaPhaln3 Genomics
updated 4.2 years ago by 3.4k • written 4.2 years ago by • 0
0
votes
3
replies
1.3k
views
`samtools depth` reports all positions though I don't indicate `-a` or `-aa`
samtools
updated 4.2 years ago by ★ 1.3k • written 4.2 years ago by ▴ 20
7
votes
2
replies
1.2k
views
Forum: Course on genome assembly and annotation
genomics
updated 4.2 years ago by 45k • written 4.2 years ago by ▴ 350
2
votes
13
replies
3.8k
views
pearson correlation between lncRNA and mRNA
pearson correlation R cor.test
updated 3.8 years ago by 45k • written 4.2 years ago by ▴ 40
4
votes
4
replies
2.2k
views
Generate QC report for STARsolo (html)
quality RNA-seq control STAR
updated 4.2 years ago by ★ 2.2k • written 4.2 years ago by ▴ 70
0
votes
4
replies
1.6k
views
gene expression databases
GEO high-throughput GEO2R
4.2 years ago by Zahra ▴ 110
0
votes
0
replies
879
views
Salmon Library Types
salmon RNA-Seq
4.2 years ago by aka ▴ 10
0
votes
7
replies
3.9k
views
Issues with genome indexing with bowtie2-build
bowtie2
updated 4.2 years ago by ▴ 80 • written 4.2 years ago by • 0
1
vote
1
reply
1.4k
views
Install STAR-Fusion inside Conda (Snakemake) fails
snakemake STAR-Fusion Conda
updated 4.2 years ago by 89k • written 4.2 years ago by • 0
3
votes
6
replies
2.3k
views
VEP chromosome name query
ensembl VCF annotation VEP
4.2 years ago by prasundutta87 ▴ 720
0
votes
5
replies
1.5k
views
AnalysingTopHat and Fast QC results
tophat FastQC RNA-seq
updated 2.5 years ago by 45k • written 4.2 years ago by • 0
0
votes
3
replies
1.4k
views
RNAseq analysis using EdgeR or Deseq2 for generating fold change graph
change fold RNAseq
4.2 years ago by najibveto ▴ 130
0
votes
0
replies
1.5k
views
Detect fusion genes from WES data
Fusion fusion WES genes
20 months ago by enes ▴ 40
2
votes
2
replies
1.5k
views
Should I subset my data before running EstimateDisp() in RNA-seq analysis ?
RNAseq edgeR EstimateDisp
4.2 years ago by Basti ★ 2.1k
5
votes
2
replies
1.2k
views
Annotation Mycoplasma genome using Prokka
Mycoplasma Annotation Prokka
4.2 years ago by A_heath ▴ 170
0
votes
3
replies
1.5k
views
Extract specific gene id from an annotation file
R RNA-seq Linux
updated 4.2 years ago by ▴ 940 • written 4.2 years ago by ▴ 30
3
votes
12
replies
3.7k
views
Amount of unique variants in VCF with linux terminal
variants unique VCF linux
updated 4.2 years ago by 45k • written 4.3 years ago by ▴ 10
3
votes
4
replies
1.3k
views
How to create boxplot with jitter points where one point is labelled
Boxplot script Labell Jitter R
4.2 years ago by Roland • 0
1
vote
3
replies
1.6k
views
Filtering duplicates with MACS2 after re-sequencing a sample to increase read depth
macs2 chip-seq
updated 4.2 years ago by 45k • written 4.2 years ago by • 0
2
votes
5
replies
2.1k
views
UMAP and "equal" objects
visualization
updated 4.2 years ago by • 0 • written 4.3 years ago by ★ 3.0k
0
votes
2
replies
1.5k
views
Is the pileup value the ATAC-seq counts?
ATAC
4.2 years ago by cthangav ▴ 110
0
votes
0
replies
405
views
Mitochondrial localization signal for CRISPR/CAS
CRISPRcas
4.2 years ago by chiti.agarwal ▴ 10
1
vote
0
replies
689
views
Pattern Search function in MicrobiomeAnalyst
MicrobiomeAnalyst metagenomics
4.2 years ago by GlycineMax ▴ 10
3
votes
4
replies
4.2k
views
Which R function can be used for intersection of genomic coordinates from one file and check if the coordinates are within a specific range?
coordinates R Genomic
4.2 years ago by bioinfo89 ▴ 60
1
vote
2
replies
770
views
FASTQC per base sequence quality
FASTQC
4.2 years ago by BIN • 0
0
votes
0
replies
751
views
Intersecting multiple bed files with reporting the number of base pairs of overlap between the features - Pybedtools
Pybedtools Coordinates Python Bedtools
4.2 years ago by BioICoder ▴ 40
0
votes
2
replies
950
views
De Novo Assembly from Oligos
assembly denovo
updated 4.2 years ago by ★ 1.5k • written 4.2 years ago by • 0
1
vote
3
replies
2.1k
views
Job: Bioinformaticist or computational biologist opportunity at Pattern Ag (CA, USA) in metagenomics
metagenomics python development NGS
updated 4.2 years ago by 45k • written 4.2 years ago by • 0
0
votes
3
replies
1.1k
views
For Loop for .fa files in folder
windows BLAST
updated 2.2 years ago by 45k • written 4.2 years ago by • 0
2
votes
2
replies
1.4k
views
Gene Regulatory Networks on Single Cell RNAseq Datasets
GRN Transcription scRNAseq ChIPseq Factors
4.2 years ago by fouerghi20 ▴ 90
1
vote
2
replies
1.1k
views
Blast Database on External Hard Disk
Standalone NCBI BLAST Local
updated 4.2 years ago by 45k • written 4.2 years ago by • 0
4
votes
12
replies
6.6k
views
How to Speed Up BLASTp
blastp linux-cluster BLAST nr-database
updated 4.2 years ago by ★ 30k • written 4.2 years ago by • 0
0
votes
0
replies
3.2k
views
2: Position guide is perpendicular to the intended axis. Did you mean to specify a different guide `position`?
EnhancedVolcano
4.2 years ago by Eko • 0
0
votes
5
replies
1.4k
views
how can i find expressions of miRNAs using TCGA
mirna tcga
updated 3.6 years ago by 153k • written 4.2 years ago by ▴ 10
1
vote
3
replies
1.4k
views
Demultiplexing reads from three libraries (non, single and dual indices)
demultiplexing bcl2fastq Illumina
updated 4.2 years ago by 153k • written 4.2 years ago by • 0
1
vote
1
reply
755
views
What is the most convenient way to interact with ncbi?
databases nsbi
updated 4.2 years ago by 153k • written 4.2 years ago by ▴ 50
0
votes
0
replies
816
views
News: Webinar on BRENDA database - comprehensive enzyme information system
enzyme protein database
updated 4.2 years ago by 153k • written 4.2 years ago by ▴ 470
3
votes
4
replies
1.5k
views
Mapping reads to a very small reference
bowtie2 mapping
updated 4.2 years ago by ★ 1.3k • written 4.2 years ago by • 0
0
votes
2
replies
1.6k
views
Exclude non shared SNPs from two datasets with PLINK
Human SNPs Genome Shared PLINK Sites
4.2 years ago by GIACOMO FRANCESCO • 0
0
votes
1
reply
779
views
How to find conserved enhancers between human cell lines?
chip enhancer h3k27ac
updated 4.2 years ago by 22k • written 4.2 years ago by ▴ 10
6
votes
2
replies
898
views
Differentially expressed genes and their promoter region accessiblity
gene regulation
updated 4.2 years ago by 22k • written 4.3 years ago by ▴ 20
1
vote
0
replies
517
views
plink vs MBMDR results :
Epistasis MBMDR plink
4.2 years ago by Mollie ▴ 10
4
votes
22
replies
11k
views
samtools coverage usage
NGS
updated 4.2 years ago by ★ 1.3k • written 4.2 years ago by ▴ 20
0
votes
0
replies
703
views
How to calculate RMSD and binding energy from the already docked ligand-receptor
python protein docking pdb structure
4.2 years ago by gundalav ▴ 380
0
votes
0
replies
624
views
Create a genomic portal web app
cbioportal genome shinyapp web server
updated 4.2 years ago by 89k • written 4.2 years ago by • 0
121,901 results • Page 627 of 2439
Recent Votes
Comment: STARlong for pacbio Isoseq reads
Comment: Automatically annotating a feature using a genbank file
Answer: Is this PCA plot correct??
Answer: Is this PCA plot correct??
Comment: Is this PCA plot correct??
Subsetting before QC in Spatial Transcriptomics
Comment: Subsetting before QC in Spatial Transcriptomics
Recent Locations • All
Memphis, TN, just now
France, 2 minutes ago
United States, 4 minutes ago
USA, 6 minutes ago
United States, 13 minutes ago
United States, 21 minutes ago
United States, 25 minutes ago
Recent Awards • All
Popular Question to okiedokie1208 ▴ 40
Popular Question to Mariano • 0
Popular Question to Physalia-courses ★ 2.6k
Popular Question to massimofaggiani • 0
Popular Question to Vanish007 ▴ 50
Popular Question to Tom • 0
Popular Question to Lawrence • 0
Recent Replies
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
Thanks, I'll give it a try.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
You could give `mapPacBio.sh` from BBMap suite a try while you wait for other answers. That works for reads up to 6 kb. BBMap has a new hom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
The average is 1.8kb. I was planning to post it on GitHub, but it seems like the repository has been unattended for the last months, so I d…
Comment: Getting just fastqc.zip file? by GenoMax 153k
Yes, You can either use it on command line or use the graphical user interface.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
What is the average length of your reads? That error sounds like a bug, so you may want to post that on `STAR` repo as an issue. I assume …
Comment: Getting just fastqc.zip file? by pourhangleila95 • 0
I want to perform fastQC on my data.Do you use fastQC software for doing it?
Comment: Whole Genome Sequencing IG regions by 719 • 0
Sorry for the poor wording of the original post, also should say I really appreciate people taking a moment to look at my post. My main con…
Comment: Is total miRNA in EV constant? Implications for library size normalization. by Thomas.H.Hampton ▴ 10
Thanks again for your carefully considered reply. You asked what I am hoping to learn from a DE analysis. Autologous stem cells are well …
Comment: Subsetting before QC in Spatial Transcriptomics by Kent ▴ 30
Hi ATpoint, thank you very much for the helpful insight! I'm still doing some literature reading on this myself, but have you come across a…
Comment: Whole Genome Sequencing IG regions by ATpoint 89k
The question is what you are after. Is this a disease setup, or...well, what is this all about. Generally, these regions are hotspots of hy…
Comment: Whole Genome Sequencing IG regions by Pierre Lindenbaum 166k
please define "interesting"
Comment: Hifiasm is getting killed while trying to assemble a genome by pranavdatar01 • 0
These are PacBio HiFi reads (total reads 5,237,005), and the total data size is 255 GB. I am the only user on the system.
Comment: Subsetting before QC in Spatial Transcriptomics by ATpoint 89k
Yes, absolutely. It is even (to me) a good practice to do (automated) crude celltype assignment first because QC metrics, such as number of…
Comment: Hifiasm is getting killed while trying to assemble a genome by pranavdatar01 • 0
I am expecting the genome to be around 1.5 Gb.
Comment: Hifiasm is getting killed while trying to assemble a genome by GenoMax 153k
> I even tried to decrease the number of threads and even used -f0, but nothing is working out. What kind of dataset is this? How many r…
Traffic: 3801 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6