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121,982 results • Page
640 of 2440
Sort: Rank
Rank
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Votes
Replies
0
votes
3
replies
1.3k
views
CD45R isoforms in RNA-seq
RNAseq
4.3 years ago by
dioscorea.bulbifera
▴ 10
4
votes
2
replies
1.2k
views
How to measure the similarity of operons from two species?
operon
similarity
bacteria
updated 4.3 years ago by
alexandermcfarland2022
▴ 30 • written 5.5 years ago by
mrj
▴ 180
0
votes
2
replies
1.3k
views
Subset gff with non-unique seqid
gff
4.3 years ago by
hazirliver
▴ 10
4
votes
6
replies
2.7k
views
python importing featureCounts to automate multiple files
featureCounts
python
updated 4.3 years ago by
Ram
45k • written 4.3 years ago by
maxdlf12
• 0
0
votes
1
reply
857
views
classification or metadata for metabolites
annotations
updated 4.3 years ago by
Arsenal
▴ 160 • written 4.3 years ago by
cmo
▴ 90
12
votes
6
replies
3.2k
views
Which is better: PacBio or Illumina for de novo transcriptome?
transcriptome
PacBio
Illumina
updated 4.3 years ago by
Friederike
9.0k • written 4.3 years ago by
karenkvn
▴ 40
0
votes
1
reply
1.2k
views
what is the best tool to remove PCR duplicates from miRNA seq without UMI?
mirna-seq
sequencing
updated 2.3 years ago by
Ram
45k • written 4.3 years ago by
Hyper_Odin
▴ 320
0
votes
2
replies
1.2k
views
topGO : compare 2 distinct groups
topGO
3.3 years ago by
lagartija
▴ 160
2
votes
2
replies
4.7k
views
dyld : Library not loaded: Reason: image not found
python
dyld
R
updated 2.6 years ago by
Ram
45k • written 4.3 years ago by
jjp55
▴ 20
1
vote
3
replies
1.7k
views
How to remove repeated sequence region in Interproscan .gff3 with many ORFs?
format
region
interproscan
gff3
gtf
updated 4.3 years ago by
Juke34
9.3k • written 4.3 years ago by
acastill
• 0
0
votes
0
replies
809
views
How can I make multiple taxID queries using qblast and store multiple blast handles using NCBIXML?
NCBIXML
qblast
python
biopython
updated 2.6 years ago by
Ram
45k • written 4.3 years ago by
oseias.rf.junior
• 0
0
votes
1
reply
818
views
Tools for SNPs and Indels (RNA seq)
SNPs
Oxford
RNA-seq
Nanopore
INDELS
updated 4.3 years ago by
Manisha Sapre
• 0 • written 4.3 years ago by
mailard
▴ 30
0
votes
0
replies
846
views
Job:
Postdoc Fellow @ New York: Long Reads, Alternative Splicing and Human Diseases
assembly
sequencing
RNA-Seq
4.3 years ago by
fanggang
▴ 120
118
votes
66
replies
53k
views
20 follow
Tutorial:
[Deprecated] Fast download of FASTQ files from the European Nucleotide Archive (ENA)
aspera
fastq-dump
Fastq
ENA
updated 2.6 years ago by
Ram
45k • written 7.3 years ago by
ATpoint
89k
0
votes
2
replies
1.4k
views
CNVkit result interpretation
results
cnv
interpretation
updated 4.3 years ago by
brunobsouzaa
▴ 840 • written 4.3 years ago by
enes
▴ 40
2
votes
6
replies
2.2k
views
Downloading bacterial genomes: correspondence between ftp ncbi identifiers and the "nucleotide" database
python
ncbi
biopython
updated 4.3 years ago by
vkkodali_ncbi
★ 3.9k • written 4.3 years ago by
Debut
▴ 20
6
votes
6
replies
6.7k
views
Problem with featureCounts using a GTF generated by me
gtf
annotation
rnaseq
updated 4.3 years ago by
Juke34
9.3k • written 4.3 years ago by
arturo.marin
▴ 20
0
votes
1
reply
2.1k
views
MACS2 error in fragment size estimation from paired-end STAR-aligned RNA-seq data
ChIP-Seq
software
alignment
RNA-Seq
error
updated 4.3 years ago by
ATpoint
89k • written 5.3 years ago by
bsaleme
• 0
0
votes
1
reply
1.1k
views
Is there a pipeline for analyzing the chromatin states and describe the process of formation?
chromHMM
updated 4.3 years ago by
Ram
45k • written 4.3 years ago by
charlie
• 0
2
votes
1
reply
947
views
jellyfish
HELPPPPPPPPPPP
updated 4.3 years ago by
GenoMax
154k • written 4.3 years ago by
Oumaima
• 0
4
votes
5
replies
1.6k
views
List index out of range
python
varscan
cnvtogenes
4.3 years ago by
Samiah
▴ 10
1
vote
4
replies
1.8k
views
unmapped reads BAM TCGA
unmapped
BAM
read
TCGA
updated 4.3 years ago by
GenoMax
154k • written 4.3 years ago by
Taktak31
• 0
1
vote
2
replies
1.4k
views
How to choose k-mer for the genome size estimation?
Assembly
genome
updated 4.3 years ago by
Oumaima
• 0 • written 4.8 years ago by
524730309
• 0
0
votes
2
replies
1.2k
views
How to calculate PSSM for large batch of proteins?
PSIBLAST
BLAST
PSSM
MACHINELEARNING
4.3 years ago by
aakashy01
• 0
1
vote
4
replies
5.0k
views
How to know if the sample from SRA is trimmed or un-trimmed
FASTQC
NGS
SRA
FASTQ
NCBI
updated 4.3 years ago by
ATpoint
89k • written 4.3 years ago by
FadyNabil
▴ 20
0
votes
0
replies
737
views
About Structural variation genotypes
variants
Structural-variants
variant-calling
genotypes
updated 24 months ago by
Ram
45k • written 4.3 years ago by
prasundutta87
▴ 730
6
votes
3
replies
8.0k
views
How to set up bcftools plugins?
BCFTOOLS
updated 4.3 years ago by
ATpoint
89k • written 4.3 years ago by
Filago
▴ 110
12
votes
8
replies
22k
views
Genome assembly N50
Assembly
assembly tools
N50
updated 4.3 years ago by
lieven.sterck
16k • written 7.3 years ago by
Inquisitive8995
▴ 280
3
votes
1
reply
1.3k
views
Fisher exact test in R package
Fisher-test
updated 18 months ago by
Ram
45k • written 4.3 years ago by
Nuglozeh
▴ 10
4
votes
0
replies
1.5k
views
Tutorial:
Long Read Genome Assembly Video Series
long-read
genome-assembly
4.3 years ago by
pbpanigrahi
▴ 430
0
votes
1
reply
884
views
Query regarding WGCNA module formation
WGCNA
R
RNA-seq
updated 4.3 years ago by
andres.firrincieli
3.9k • written 4.3 years ago by
microorganism_001
▴ 30
0
votes
1
reply
1.1k
views
Detection of biallelic mutation (inactivation)
somatic
biallelic
mutation
updated 4.3 years ago by
Arsenal
▴ 160 • written 4.3 years ago by
CY
▴ 750
15
votes
10
replies
22k
views
7 follow
How to convert bulk UniProt Id to GO terms/Ids?
Uniprot
RNA-Seq
Assembly
updated 4.3 years ago by
Pratik
★ 1.1k • written 8.6 years ago by
mirzaei86.vahid
▴ 50
1
vote
0
replies
1.2k
views
Colocalization window size
COLOC
eqtl
R
gwas
updated 4.3 years ago by
zx8754
12k • written 4.3 years ago by
Filago
▴ 110
8
votes
25
replies
4.7k
views
construction of a database
sql
noSQL
neo4j
database
updated 2.6 years ago by
Ram
45k • written 4.4 years ago by
Debut
▴ 20
2
votes
3
replies
12k
views
Using Seurat function `FindMarkers` to find differentially expressed genes between normal group and treatment group within one specific cell type clu…
Seurat
FindMarkers
scRNA
updated 4.3 years ago by
ATpoint
89k • written 4.3 years ago by
FantasticAI
▴ 60
4
votes
6
replies
14k
views
Looking for differential gene expression between treatment, within a specific cluster (seurat)
seurat
updated 16 months ago by
jared.andrews07
★ 19k • written 6.1 years ago by
cook.675
▴ 250
2
votes
4
replies
1.3k
views
What is the meaning of the name MUMmer ?
Mummerplot
Dna
Alignment
Mummer
Sequence
4.3 years ago by
Student
▴ 30
0
votes
0
replies
739
views
GWAS catalog results as input for Prsice2
Polygenic
SNPs
scoring
risk
GWAS
Genotype
4.3 years ago by
davidenoma
▴ 50
0
votes
3
replies
1.8k
views
Sequence Read Archive (SRA) submission ERROR
submission
rnaseq
sra
updated 4.0 years ago by
annabelle.damerum
• 0 • written 4.3 years ago by
ovariohisterectomia
▴ 40
2
votes
1
reply
856
views
Color protein multiple sequence alignement per secondary structures
multiple
secondary
sequence
alignment
structures
color
4.3 years ago by
ttubiana
▴ 30
0
votes
4
replies
1.4k
views
different padj from DESeq2 when using different contrast input format
DESeq2
RNA-Seq
4.3 years ago by
cwwong13
▴ 40
2
votes
4
replies
1.3k
views
whole tissue and RNA-seq: can I still study specific cell types?
WGCNA
rnaseq
4.3 years ago by
demoraesdiogo2017
▴ 120
0
votes
2
replies
1.9k
views
Converting U to T in my miRNA sequences
RNA-Seq
updated 4.3 years ago by
Pierre Lindenbaum
166k • written 4.3 years ago by
aranyak111
• 0
1
vote
1
reply
1.8k
views
Job:
Bioinformatics Solution Architect @ Elucidata, Cambridge MA (USA)
Cambridge
Boston
updated 4.3 years ago by
Ram
45k • written 4.3 years ago by
ben.lubetsky
• 0
0
votes
1
reply
1.2k
views
SICER2 (or EPIC) genomes
Genome
EPIC
ChIP-seq
SICER
Sequencing
updated 4.3 years ago by
ATpoint
89k • written 4.3 years ago by
jjp55
▴ 20
1
vote
3
replies
1.6k
views
circular R plot
r
updated 4.3 years ago by
Ram
45k • written 4.3 years ago by
evafinegan
• 0
0
votes
1
reply
1.1k
views
How can i handle the multimapped reads?
assembly
sequencing
alignment
updated 4.3 years ago by
Charlene Hsuan-lin Her
• 0 • written 4.6 years ago by
PK
▴ 130
2
votes
4
replies
1.1k
views
Finding length of multiple fastq.gz files
zcat
Fastq
updated 4.3 years ago by
cpad0112
21k • written 4.3 years ago by
brisbio
▴ 30
5
votes
2
replies
1.7k
views
How to compare cell-type ratios in sc-RNA seq data?
sc-RNA
single-cell
cell-type
4.3 years ago by
sc-ruzafa
▴ 20
121,982 results • Page
640 of 2440
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Comment: GTF file for HIV strain pNL4-3
by
Ales
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All of the genome assemblies are from the LANL compendiu, match accession with GENBANK (>2,000 complete genome assemblies from the 2021 LAN…
Comment: Hisat2 splice sites extract blank files
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Comment: convert genome file to transcriptome file
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Should be noted that the gtf/gff and genomic.fna files for HIV only contain CDS annotations of the 9 ORFs and not the full transcripts. Onl…
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just wanted to follow up that to address this specific issue we just released HIV transcriptome annotations of alternative splicing featuri…
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For anyone stumbling on this. We have recently completed reference-grade annotation for several thousand HIV-1 genomes including the HXB2 (…
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Yes, I found all the barcodes, but could working on WSL affect the basecalling results?
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Since I was running in stub-run mode, the solution was to make unique names for the FASTQC process like this: touch ${sample}_${rea…
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Many researchers use the CLC Genomics Workbench and Ingenuity Pathway Analysis. CLC can be used to do secondary analysis for your dataset a…
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For example, in this image, the red area represents the differentially acetylated region returned by DiffBind. The green area is a promoter…
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Interesting pricing model : https://www.nygen.io/pricing Depending on user needs could be used (or certainly tested) for free. And this is …
Answer: Dorado in PowerShell on Windows
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> yet I received 96 fastq files in demux_out that corresponded to the 96 barcodes. Additionally, I'm unsure if I should re-trim the fastq f…
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