Limit : all time
all time today this week this month this year
121,906 results • Page 678 of 2439
Sort: Rank
Rank Views Votes Replies
0
votes
2
replies
1.5k
views
extract pathogens from metaphlan3 results
analysis MetaPhlAn3 Metagenome genomics
4.5 years ago by serene.s • 0
1
vote
2
replies
1.3k
views
Comparing Log2 Fold Change Values across all timepoints between two groups in DESEQ2
RNA-seq Bioconductor DESEQ2 R
updated 4.5 years ago by 9.0k • written 4.5 years ago by ▴ 30
0
votes
4
replies
1.6k
views
Plotting points that are in Enhanced Volcano that are 0.01 LFC units apart
RNA-seq EnhancedVolcano
4.4 years ago by raisamathenge ▴ 30
3
votes
5
replies
5.7k
views
I could not load GTF data at IGV("Could not create index file") Please help me :)
gtf igvtools igv sort index
updated 4.5 years ago by 153k • written 4.5 years ago by • 0
1
vote
3
replies
2.0k
views
Nextflow chipseq error: Prevent PHANTOMPEAKQUALTOOLS from running out of disk space
nextflow phantompeakqualtools chipseq
updated 4.4 years ago by ★ 4.8k • written 4.5 years ago by ▴ 20
3
votes
7
replies
3.8k
views
Tophat2 Error gzip pipe broken? zipped file empty?
tophat2 RNA-Seq gzip bowtie alignment
updated 4.5 years ago by • 0 • written 7.2 years ago by ▴ 10
0
votes
1
reply
1.8k
views
Comparing HiC results
hic chromatin hiccups 3-C
4.5 years ago by Nikleotide ▴ 130
3
votes
4
replies
4.7k
views
Python program that reads a fastq file and calculate Phred score
phred fastq
4.5 years ago by sherrygeek • 0
1
vote
3
replies
4.6k
views
GTR always the best model of evolution
Phylogenetics GTR Nucleotide Evolution Models
updated 4.5 years ago by ▴ 10 • written 10.4 years ago by ▴ 130
0
votes
0
replies
668
views
Family analysis in PLINK
plink --Tdt
4.5 years ago by Jacob • 0
0
votes
0
replies
1.3k
views
Controlled vs Public MAFs
GDC TCGA MAF
4.5 years ago by Jn Rmro ▴ 10
0
votes
0
replies
654
views
Plot Categorical Traits on Terminal Nodes of Tree using Character Matrix
charactermatrix phylogeny phylogenetics Mesquite
4.5 years ago by molly77 ▴ 10
0
votes
0
replies
921
views
bootstrapping help
genome bootstrap vcf bootstrapping SNP
4.5 years ago by truebeliever24 ▴ 50
0
votes
3
replies
1.3k
views
I want to use global test.
rpy r rpy2 gene globaltest
updated 4.5 years ago by 89k • written 4.5 years ago by • 0
0
votes
3
replies
1.4k
views
How to extract consensus sequence for a genomic region from a bam file
samtools bam
4.5 years ago by michael.flower.14 ▴ 210
0
votes
0
replies
1.6k
views
Job: Postdoc positions at Harvard Medical School
niche postdoc stem Harvard immunology
4.5 years ago by Joji • 0
2
votes
3
replies
3.0k
views
Efficient way to merge multiple single sample vcf files with same variants / load into PLINK
vcf plink merging bcftools
4.4 years ago by dmitry.s.kolobkov • 0
1
vote
0
replies
999
views
LC-MS/MS normalisation techniques in metabolomics
normalisation metabolomics R
4.5 years ago by judhenaosa ▴ 50
0
votes
0
replies
612
views
Conversion of Zebrafish GO id to KEGG id
KEGG
4.5 years ago by aranyak111 • 0
3
votes
2
replies
1.3k
views
Meaning of start codon not made of 3 consecutive bases?
start
updated 4.5 years ago by 166k • written 4.5 years ago by ▴ 10
1
vote
7
replies
5.1k
views
Converting genbank to GTF?
gtf genbank
updated 4.5 years ago by 103k • written 4.5 years ago by ▴ 50
0
votes
1
reply
727
views
Chi Square Test
ChiSquareTest
updated 4.5 years ago by 103k • written 4.5 years ago by • 0
3
votes
8
replies
2.8k
views
Quantification of stranded RNA-seq data
featureCounts RNA-seq stranded Hisat2
updated 4.5 years ago by 9.0k • written 4.5 years ago by ▴ 110
0
votes
0
replies
1.0k
views
filter bam file by summarizing tags
tags bamtools filter bowtie2
4.5 years ago by Hadar • 0
0
votes
0
replies
893
views
Canu possibly idling in the "meryl" step
canu meryl assembly genomics kmer
4.5 years ago by Matteo Schiavinato ★ 3.7k
0
votes
0
replies
683
views
MSA - optimize prealigned sequences - limit number of introduced gaps
MSA
4.5 years ago by massa.kassa.sc3na ▴ 650
2
votes
6
replies
2.9k
views
Aligning Paired-end file in R/Rstudio using align function
Rstudio RNA-Seq R
updated 4.5 years ago by 7.9k • written 4.5 years ago by • 0
8
votes
4
replies
4.3k
views
Any standalone tool for INDEL Realignment?
indels deepvariant realignment
updated 4.5 years ago by 89k • written 4.5 years ago by ▴ 20
5
votes
4
replies
1.7k
views
Complete of Illumina raw reads
assembly illumina
4.5 years ago by A_heath ▴ 170
0
votes
2
replies
994
views
Jellyfish databases overlap
Jellyfish
4.5 years ago by MarVi ▴ 30
0
votes
0
replies
798
views
How to add rs ID to SNP dosage file
SNPs Plink rsID
updated 4.5 years ago by 166k • written 4.5 years ago by ▴ 70
0
votes
0
replies
669
views
Validation of Bioinformatics pipeline with NA12763
hap.py
updated 2.5 years ago by 45k • written 4.5 years ago by ▴ 30
9
votes
6
replies
4.6k
views
Why does Illumina have the extra +1 cycle?
NGS Illumina
updated 4.5 years ago by 153k • written 4.5 years ago by ▴ 290
1
vote
4
replies
1.5k
views
How to find the true orthologs from recipocal blast hits (blastn) ?
RNA DNA blast alignment
3.2 years ago by sunnykevin97 ▴ 1000
0
votes
2
replies
815
views
Phylotranscriptomics approach understanding evolution from museum specimens ?
genomics RNA alignment
4.5 years ago by sunnykevin97 ▴ 1000
0
votes
2
replies
1.6k
views
R ggplot2 creating separate plots for different subsets of rows
r facet-wrap cowplot for-loop ggplot2
4.5 years ago by moritz.lasse • 0
2
votes
2
replies
1.8k
views
TiTv ratio
TiTv QC stat WES BCFtools
updated 4.5 years ago by ▴ 720 • written 4.5 years ago by ▴ 40
3
votes
5
replies
6.0k
views
How to explain fastq insert size peak
RNAseq trimming
updated 4.5 years ago by 153k • written 4.5 years ago by ▴ 290
0
votes
0
replies
859
views
News: Online training - Network Analysis in R
R NetworkAnalysis
4.5 years ago by Physalia-courses ★ 2.6k
0
votes
1
reply
1.5k
views
Convert a DNA sequence to MEME format
FIMO fasta motif MEME-suite format conversion
updated 4.5 years ago by 153k • written 4.5 years ago by ▴ 190
5
votes
5
replies
3.5k
views
Trying to do log2 transformation of my rna seq data
R
updated 4.5 years ago by ★ 8.3k • written 4.5 years ago by ▴ 30
1
vote
0
replies
1.0k
views
rvtest fails after Snpeff annotation: Core dumped error
snpeff Genomics rvtests
4.5 years ago by raphael.B ▴ 540
1
vote
7
replies
2.7k
views
What's the most efficient way to load k-mers into dict in python?
K-mer
updated 4.2 years ago by 45k • written 4.5 years ago by • 0
1
vote
0
replies
1.1k
views
Job: Computational Genomics Position is Opening at Johnson & Johnson
genetics statistical genomics
updated 2.3 years ago by 45k • written 4.5 years ago by ★ 9.6k
0
votes
2
replies
2.0k
views
Structural variations (SV calling using Parliament2)
SV CNV software error
updated 4.5 years ago by 153k • written 5.1 years ago by ▴ 20
1
vote
3
replies
1.5k
views
how to add scientific samples to yfull
samples yfull
updated 4.4 years ago by • 0 • written 4.5 years ago by • 0
0
votes
0
replies
792
views
ChIPSeq and WGBS Read mapping to HLA region
WGBS MHC-1 ChIPSeq bisulfite hla
4.5 years ago by Nikleotide ▴ 130
2
votes
3
replies
3.1k
views
hmmer e-value
hmmer pfam
updated 4.5 years ago by ★ 30k • written 4.5 years ago by ▴ 10
0
votes
0
replies
761
views
Job: Postdoctoral Research Scholar with ASU and Sun Genomics - human gut microbiome and Autism
biodesign biotech autism microbiome postdoc
4.5 years ago by Leah • 0
3
votes
1
reply
1.0k
views
How to download specific genomes
comparative ncbi genomes genomics assembly
updated 4.5 years ago by 153k • written 4.5 years ago by ▴ 30
121,906 results • Page 678 of 2439
Recent Votes
Answer: Tried building a compact sequence format with 4-bit storage
Tried building a compact sequence format with 4-bit storage
Shift in RNA 3' position, Term-Seq vs RNASeq
Comment: STARlong for pacbio Isoseq reads
Comment: Automatically annotating a feature using a genbank file
Answer: Is this PCA plot correct??
Answer: Is this PCA plot correct??
Recent Locations • All
France/Nantes/Institut du Thorax - INSERM UMR1087, just now
United States, 2 minutes ago
Hong Kong, 6 minutes ago
Austria, 9 minutes ago
India, 36 minutes ago
Norway, 47 minutes ago
United Kingdom, 1 hour ago
Recent Awards • All
Popular Question to Apprentice ▴ 190
Popular Question to pranavdatar01 • 0
Popular Question to Matteo Ungaro ▴ 130
Popular Question to mbramble • 0
Popular Question to okiedokie1208 ▴ 40
Popular Question to Mariano • 0
Popular Question to Physalia-courses ★ 2.6k
Recent Replies
Comment: Is total miRNA in EV constant? Implications for library size normalization. by Gordon Smyth ★ 8.3k
RNA-seq is very good at relative analyes. It would be straightforward to determine which miRNAs are relatively more abundant, compared to o…
Comment: Tried building a compact sequence format with 4-bit storage by Pranava ▴ 10
Woah!!! Thank you very much, Matthias. I honestly didn't even know some of those existed and I will definitely go through them and try to u…
Answer: Tried building a compact sequence format with 4-bit storage by Matthias Zepper 5.1k
Hello Pranava, Thanks for sharing your repository. Devising a new file format is an interesting undertaking and certainly a task with many…
Answer: Gene Ontology Enrichment with LOC gene IDs in Common Carp (Cyprinus carpio) by GenoMax 153k
`LOC` gene ID's are often assigned to uncharacterized genes and you may not get useful information from databases for them, thus they will …
Comment: Whole Genome Sequencing IG regions by GenoMax 153k
> are the calls I am seeing reliable or should I take them with something of a pinch of salt? Not sure what calls you are referring to but…
Comment: RNA-SEQ where only a subset of genes is of interest by piffelpaff • 0
Sorry to revive this ancient thread but I'm currently discussing the same question with some people in my lab and would love to somebody po…
Answer: STARlong for pacbio Isoseq reads by YuZJ • 0
Hello, you may try deSALT (DOI: 10.1186/s13059-019-1895-9, GitHub: ydLiu-HIT/deSALT) or uLTRA (DOI: 10.1093/bioinformatics/btab540, GitHub:…
Comment: Shift in RNA 3' position, Term-Seq vs RNASeq by acvill ▴ 350
Without knowing the details of the Term-seq method, could the 38 nt shift be accounted for by the difference in the position of the ribosom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
Thanks, I'll give it a try.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
You could give `mapPacBio.sh` from BBMap suite a try while you wait for other answers. That works for reads up to 6 kb. BBMap has a new hom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
The average is 1.8kb. I was planning to post it on GitHub, but it seems like the repository has been unattended for the last months, so I d…
Comment: Getting just fastqc.zip file? by GenoMax 153k
Yes, You can either use it on command line or use the graphical user interface.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
What is the average length of your reads? That error sounds like a bug, so you may want to post that on `STAR` repo as an issue. I assume …
Comment: Getting just fastqc.zip file? by pourhangleila95 • 0
I want to perform fastQC on my data.Do you use fastQC software for doing it?
Comment: Whole Genome Sequencing IG regions by 719 • 0
Sorry for the poor wording of the original post, also should say I really appreciate people taking a moment to look at my post. My main con…
Traffic: 4871 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6