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121,912 results • Page
698 of 2439
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
921
views
Q-Q plot for p-value from HWE exact test
Q-Q plot
Hardy-Weinberg
p-value
GWAS
QC
4.5 years ago by
panacotaforcota
• 0
0
votes
0
replies
639
views
Reference gffs for jitterbug
jitterbug
MEl
WES
4.5 years ago by
Paso
▴ 10
0
votes
0
replies
1.0k
views
FIMO --max-stored-scores option
fimo
meme
4.5 years ago by
lessismore
★ 1.4k
1
vote
5
replies
1.2k
views
Mugsy percentage of identity
Mugsy
Genome-alignment
updated 2.0 years ago by
Ram
45k • written 4.5 years ago by
A_heath
▴ 170
3
votes
6
replies
2.1k
views
microrna mRNA interactions search
microrna
mrna
updated 4.4 years ago by
i.sudbery
22k • written 4.5 years ago by
cagdas
▴ 10
0
votes
0
replies
1.1k
views
variant calling error with VarDict
R
software error
snp
4.5 years ago by
shubhamkumbhar420
▴ 40
3
votes
2
replies
2.6k
views
ATAC-seq FastQC showing 5' sequence content bias
ATAC-seq
fastqc
updated 4.5 years ago by
ATpoint
89k • written 4.5 years ago by
Papyrus
★ 3.1k
3
votes
3
replies
1.2k
views
Samtools sort by name - bam size issue
alignment
genome
samtools
updated 4.5 years ago by
Pierre Lindenbaum
166k • written 4.5 years ago by
quentin54520
▴ 120
0
votes
1
reply
1.1k
views
metaphlan2.py ERROR: Unable to create folder for database install
genome
metagenome
4.5 years ago by
kocharovskayaj
• 0
3
votes
6
replies
2.3k
views
should I merge several SRR fastq file download from sra?
RNA-Seq
updated 4.5 years ago by
lieven.sterck
15k • written 4.5 years ago by
hellocita
▴ 40
3
votes
4
replies
2.0k
views
Unused command line option: --make-just-fam
plink
GWAS
linux
updated 4.5 years ago by
davidenoma
▴ 50 • written 4.5 years ago by
suraj.adewale1
• 0
2
votes
2
replies
1.1k
views
Remove fasta sequence on the basis of header name
fasta
header
updated 4.5 years ago by
5heikki
11k • written 4.5 years ago by
harry
▴ 40
2
votes
8
replies
4.3k
views
R script for loading .CEL.gz files in afffy package
R
microarray data
.CEL files
affy package
4.5 years ago by
raavi21198
▴ 20
0
votes
1
reply
971
views
GWAS LocusZoom Plot from .CSV
gwas
plotting
updated 3.2 years ago by
El Rishi
• 0 • written 4.5 years ago by
abyousaf
• 0
2
votes
9
replies
6.1k
views
Allele count from factor variable in R
genome
SNP
R
updated 2.6 years ago by
Ram
45k • written 10.4 years ago by
pifferdavide
▴ 110
0
votes
2
replies
2.9k
views
Is it worth to analyzing low quality ATAC-seq data
ATAC-seq
QC
TSS
4.5 years ago by
cwwong13
▴ 40
1
vote
0
replies
1.1k
views
Single-cell-ATAC normalization and merginig
next-gen
R
sequencing
4.5 years ago by
C4
▴ 30
1
vote
3
replies
1.8k
views
How to extract the longest CDS from Homo_sapiens.GRCh38.cds.all.fa?
python script
biopython
ensembl
4.5 years ago by
Enhancer
• 0
0
votes
0
replies
1.1k
views
TopMed VCF validation error
TopMed
VCF
Chunks
Validation
4.5 years ago by
Guilherme
▴ 40
0
votes
1
reply
701
views
How will the fusion sequence looks like in RNA level
rna-seq
next-gen
4.5 years ago by
sichen0415
• 0
1
vote
5
replies
1.2k
views
GO Terms - most common between - many gene lists (from 36 scRNAseq clusters)
RNA-Seq
next-gen
4.5 years ago by
kieran.short
• 0
0
votes
0
replies
824
views
Job:
HIRING: Sequencing Specialist - UC Santa Cruz Genomcis Institute
genome
RNA-Seq
assembly
illumina
sequence
updated 2.2 years ago by
Ram
45k • written 4.5 years ago by
genomicshr
▴ 30
0
votes
2
replies
899
views
Bowtie: "Floating point exception: 8"
bowtie
alignment
ChIP-Seq
updated 4.5 years ago by
swbarnes2
15k • written 4.5 years ago by
Marco Pannone
▴ 810
18
votes
39
replies
6.8k
views
Tool:
CBioInfCpp.h as a C++ lib containing some functions for bioinformatics
cpp
updated 2.3 years ago by
Ram
45k • written 6.4 years ago by
chernouhov sergey
▴ 50
0
votes
7
replies
2.3k
views
On (sub)graph isomorphism
subgraph isomorphism
graph isomorphism
4.5 years ago by
chernouhov sergey
▴ 50
0
votes
1
reply
1.6k
views
Bbmerger -lots of ambiguous reads
merging
paired-end reads
4.5 years ago by
ja569116
• 0
11
votes
5
replies
2.1k
views
Does DESeq2 and EdgeR account for the increased total RNA production in one of the experimental group
RNA-Seq
DESeq2
EdgeR
updated 4.5 years ago by
i.sudbery
22k • written 4.5 years ago by
cwwong13
▴ 40
2
votes
0
replies
959
views
Contig Ploidy Model
gatk
DetermineGermlineContigPloidy
4.5 years ago by
akshitiz09
▴ 20
3
votes
2
replies
827
views
plotCoverage.py error: Values instance has no attribute 'working_Dirpath'
deeptools
plotCoverage
4.5 years ago by
mthm
▴ 80
0
votes
2
replies
3.4k
views
Making a UMAP from FCS file in R
R
Flow
UMAP
updated 4.5 years ago by
keely.dulmage
• 0 • written 4.6 years ago by
roberts
▴ 60
0
votes
2
replies
683
views
Extract domain sequence from whole protein sequence
sequence
4.5 years ago by
carlosmunozm
• 0
1
vote
2
replies
1.6k
views
How to use CD-HIT to filter protein sequences dataset by certain similarity threshold?
sequence
updated 4.5 years ago by
Mensur Dlakic
★ 30k • written 4.5 years ago by
opronu
• 0
0
votes
1
reply
1.5k
views
Creating a multiple sequence alignment based on multiple genes.
Clustal-Omega
Multiple-sequence-alignment
Panaroo
updated 2.4 years ago by
Sasha
▴ 850 • written 4.5 years ago by
matejasoretic
▴ 10
3
votes
7
replies
2.0k
views
Editing Manta structural VCF file
VCF
Structural variants
Manta
WGS
updated 4.5 years ago by
GenoMax
153k • written 4.5 years ago by
parvathi.sudha
▴ 40
0
votes
3
replies
1.3k
views
Split already joined and demultiplexed pair end sequences into separate FASTA files
metagenomics
qiime
4.5 years ago by
haig.they
• 0
0
votes
2
replies
1.2k
views
How PCR amplification affects rna-seq data
RNA-Seq
4.5 years ago by
Javad
▴ 150
1
vote
9
replies
5.1k
views
Games-howell test in R and implementing a function
R
gameshowell
nonparametrictest
4.5 years ago by
jansha.1997
• 0
0
votes
1
reply
685
views
genomes from genbank showing extra annotations in benchling
genome
sequence
genbank
4.5 years ago by
Wilber0x
▴ 50
0
votes
0
replies
1.0k
views
is Generalized Additive Model appropriate for my data?
GAM
Generalized-additive-models
models
statistics
4.5 years ago by
annaA
▴ 10
28
votes
7
replies
2.6k
views
Forum:
Do you have favorite icons for bioinformatics?
ubuntu
updated 2.5 years ago by
Ram
45k • written 4.5 years ago by
kojix2
▴ 250
0
votes
2
replies
790
views
Data Comparison in python
sequencing
next-gen
sequence
snp
gene
updated 4.5 years ago by
Mensur Dlakic
★ 30k • written 4.5 years ago by
hsrivastava63
• 0
0
votes
3
replies
2.0k
views
Filter count matrix -with replicates -based on variance
filter
RNA-Seq
count-matrix
4.5 years ago by
annaA
▴ 10
0
votes
2
replies
1.1k
views
Sort protein sequences according to their sequence similarity
alignment
sequence
protein
updated 4.5 years ago by
Mensur Dlakic
★ 30k • written 4.5 years ago by
Josep Ollé
• 0
0
votes
1
reply
732
views
How do I find the percentage of paired-end fastq files containing a given string
fastq
bbduk
updated 4.5 years ago by
GenoMax
153k • written 4.5 years ago by
lkianmehr
▴ 100
1
vote
1
reply
1.7k
views
VEP custom annotation didn't add INFO field
vep
vcf
updated 4.5 years ago by
Emily
24k • written 4.5 years ago by
MatthewP
★ 1.4k
0
votes
1
reply
1.1k
views
How to keep the individual read depth with bcftools call?
bcftools
4.5 years ago by
KL_STKLBK
• 0
1
vote
5
replies
1.8k
views
Creation of subset of diamond database
alignment
updated 4.5 years ago by
buchfink
▴ 250 • written 4.7 years ago by
mark.bogen
• 0
8
votes
13
replies
2.3k
views
Getting the fasta format of a list of genes
genome
fasta
alignment
updated 4.5 years ago by
Emily
24k • written 4.5 years ago by
zizigolu
★ 4.4k
7
votes
6
replies
2.6k
views
Sequencing lane and introduction of batch variation
RNA-Seq
sequencing
next-gen
genome
4.5 years ago by
joetaylor268
▴ 20
0
votes
0
replies
772
views
Discrepancy in structural variants results from mauve and MUM&Co
assembly
structural variants
mauve
MUMandCo
updated 4.5 years ago by
Biostar
20 • written 4.6 years ago by
rthapa
▴ 90
121,912 results • Page
698 of 2439
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Getting VCF file for the 1000 genome project with rsid
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Answer: Different UMAP for batch correction in R and Pytho
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Answer: Different UMAP for batch correction in R and Pytho
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Recent Replies
Comment: [vg giraffe] Unable to add read group to BAM file
by
saruman
• 0
It seems that using the following format fixes the problem: --read-group "1 SM:HG002 LB:lib1 PL:illumina PU:unit1" As shown below: …
Comment: Developing a genomics ML model using bytes?
by
dariober
15k
> what if we can use the bytes to develop a model? My understanding is that the OP is considering building a model using the sequences in …
Comment: WGCNA package in R: dendogram plot error
by
RJ
• 0
You might had delete the outliers from the expression table but then the traits data.frame doesn't match with expression table dimensions.
Comment: miRNA low mapping ratings
by
Ant
▴ 50
No, it's a personal dataset. I haven’t seen the link, but if I understand correctly, it's not possible to use the software for free, right?
Comment: miRNA low mapping ratings
by
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153k
So this is a public dataset? QIAseq miRNA libraries may require special handling. Have you seen --> https://resources.qiagenbioinformatics.…
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by
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153k
Are you referring to software found here --> http://download.arb-home.de/release/latest/ ? If so why are you installing the source. Authors…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
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153k
All valid points. This is a SRA dataset. If it is covered by a publication hopefully it is not a bad one. @Pranav if you can post the SRA a…
Answer: Different UMAP for batch correction in R and Pytho
by
antonioggsousa
3.4k
Hi, I'm mostly an R user, but the codes you presented look correct to me. The two UMAP projections *"look too similar to be different"*, …
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by
Joe
22k
This might help: https://millardlab.org/lab-members/alumni/lucy-gannon/lucys-beginner-guide-to-bacteriophage-genome-assembly/
Comment: RNA-SEQ where only a subset of genes is of interest
by
piffelpaff
• 0
Thanks for your reply. Yes it's single-cell and we're talking about roughly 30 pre-selected genes. I see. I was rather referring to the d…
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This may not be exactly what you're looking for (kind of the other way around, predicting synthetic clusters from genes rather than the pro…
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89k
How is this different from https://www.biostars.org/p/9615062/
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npb27
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Hi thanks for your answer Interesting idea about ribosome length, although I can't think why this should affect the apparent 3' position b…
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89k
Is this single-cell? How many genes are we talking about? > The alternative would be to just use the raw data without normalization, run W…
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89k
So essentially you work on a compression algorithm, is it? If so, be sure to bechmark your idea against the hundreds of existing and fast c…
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