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121,911 results • Page
697 of 2439
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
832
views
tophat2 mapping fr-firststrand or fr-secondstrand ?
tophat2
fr-firststrand
fr-secondstrand
AB SOLiD
4.5 years ago by
debitboro
▴ 270
1
vote
3
replies
1.4k
views
What file to use for Deseq2 and where to get it from
RNA-Seq
sequencing
next-gen
updated 4.5 years ago by
ATpoint
89k • written 4.5 years ago by
ashwing.kofficial
▴ 10
0
votes
0
replies
806
views
DAVID Bioinformatics tool
David
data visulization
4.5 years ago by
joyeeta.dutta.in
• 0
0
votes
2
replies
823
views
Error in platanus: file format exception
assembly
4.5 years ago by
yamkelamgwatyu
• 0
1
vote
3
replies
2.3k
views
Can we compare peaks of different transcription factors when they were obtained by different criteria (IDR/FDR)?
ChIP-Seq
IDR
RNA-Seq
updated 4.5 years ago by
Biostar
20 • written 7.1 years ago by
salamandra
▴ 550
0
votes
2
replies
1.5k
views
KOBAS 3.0 web server is down
KOBAS
updated 4.3 years ago by
bioadept
• 0 • written 4.5 years ago by
956120746
• 0
2
votes
7
replies
1.8k
views
dual-RNA seq combined reference alignment
RNA-Seq
updated 4.5 years ago by
sontiroy
• 0 • written 5.4 years ago by
u3005992
▴ 20
1
vote
5
replies
2.2k
views
what are the best metagenome assemblers?
assembly
updated 4.5 years ago by
956120746
• 0 • written 5.0 years ago by
Rubemsilva32
• 0
2
votes
2
replies
5.2k
views
Genome repeat masking before gene annotation
genome-annotation
updated 2.5 years ago by
Ram
45k • written 8.0 years ago by
abhijit.synl
▴ 60
0
votes
1
reply
919
views
[WGS] how to correctly visualize long indels (50nt+)
wgs
indel
visualization
igv
gatk
4.5 years ago by
memento1984_1
• 0
0
votes
1
reply
833
views
How to retrieve representative at 30% sequence identity in PDB
PDB
updated 4.5 years ago by
GenoMax
153k • written 4.5 years ago by
bosimiya
• 0
0
votes
0
replies
656
views
concatenate the human genome fasta file with the SARS-COV2 virus
RNA-Seq
genome
assembly
4.5 years ago by
FarnazTabrizi95
• 0
0
votes
3
replies
1.4k
views
Functional annotation of DESeq2 results?
RNA-Seq
rna-seq
gene
R
4.5 years ago by
snow4964
▴ 10
0
votes
0
replies
1.7k
views
Job:
Exciting Bioinformatician/Statistician Opportunity at Gladstone Insitutes (San Francisco)
RNA-Seq
genome
R
sequencing
updated 2.5 years ago by
Ram
45k • written 4.5 years ago by
janine.doerner
▴ 20
0
votes
0
replies
766
views
Can I use a subset of VCF my files for quality checks?
quality checks
relatedness
vcf
updated 4.5 years ago by
Biostar
20 • written 4.7 years ago by
floortje
• 0
2
votes
1
reply
1.0k
views
Prepare a GenBank submission: Can you turn this Perl script into a one-liner?
assembly
perl
code-golf
updated 4.5 years ago by
GenoMax
153k • written 4.5 years ago by
Michael
56k
2
votes
3
replies
3.6k
views
Making plots for enrichment and KEGG results
R
gene
updated 4.5 years ago by
halo22
▴ 300 • written 4.5 years ago by
ymervenuryavuz
• 0
0
votes
2
replies
1.0k
views
Linear regression on genotype data
SNP
updated 4.5 years ago by
halo22
▴ 300 • written 4.5 years ago by
khatami.mahshid
▴ 30
2
votes
2
replies
1.8k
views
clusterProfiler Results not showing
clusterprofiler
RNA-Seq
R
enrichKEGG
updated 4.5 years ago by
halo22
▴ 300 • written 4.5 years ago by
geoffkerr22
▴ 10
0
votes
0
replies
899
views
Using InterProScan - ATPase results only
sequence
InterProScan
annotation
4.5 years ago by
damt09
• 0
0
votes
0
replies
728
views
Why do my polysome and monosome-RNAs map to less exons?
RNA-Seq
sequencing
alignment
next-gen
Assembly
4.5 years ago by
joetaylor268
▴ 20
0
votes
0
replies
786
views
Variant Calling when Genetic Distance between Reference and Samples is Greater than it is for Humans: Does GATK still perform well?
GATK
variant calling
MASH
4.5 years ago by
robertwhbaldwin
• 0
1
vote
1
reply
638
views
Gene names from gene ID
gene
alignment
4.5 years ago by
shivam.jgandhi
• 0
0
votes
1
reply
894
views
Plot fastPHASE output
fastphase
plot
R
haplogroups
SNP
updated 4.5 years ago by
nbkingsley
• 0 • written 4.5 years ago by
simone.castellana
▴ 10
0
votes
0
replies
707
views
How to analyze ribosome profiling data in the form of a 2x2x2 experiment
RNA-Seq
Ribosome Profiling
DESeq2
4.5 years ago by
kyusikkim
▴ 20
0
votes
2
replies
878
views
How can I ask questions that contain species names?
meta
updated 2.3 years ago by
Ram
45k • written 4.5 years ago by
garden_giessen
▴ 130
9
votes
11
replies
4.0k
views
I cannot open jalview on linux
ubuntu
java
jalview
updated 4.5 years ago by
ben_s
▴ 50 • written 4.6 years ago by
hamid.gaikani
▴ 80
0
votes
0
replies
958
views
Job:
Senior Bioinformatics Scientist at Boston Children's Hospital
scRNA-seq
next-gen
RNA-Seq
updated 2.5 years ago by
Ram
45k • written 4.5 years ago by
shira.rockowitz
▴ 10
2
votes
4
replies
1.4k
views
Compare different library
RNA-Seq
DESeq2
updated 4.5 years ago by
Biostar
20 • written 5.9 years ago by
inminin
• 0
0
votes
0
replies
1.3k
views
filtering issue when using bamCoverage
alignment
sequencing
bam
bamCoverage
deepTools
4.5 years ago by
GA
• 0
2
votes
3
replies
844
views
Find defence related and disease resistant genes in Rice genome
genome
gene
sequence
4.5 years ago by
vedikaa96
• 0
1
vote
1
reply
1.2k
views
Job:
Opportunity: Bioinformatics Engineer - Bioinformatics Core @ Memorial Sloan Kettering Cancer Center, New York, NY (US)
cancer-biology
Python
R
updated 2.5 years ago by
Ram
45k • written 4.5 years ago by
bic-recruit
▴ 10
0
votes
3
replies
780
views
How can I download the essential list of medicines of Germany without paying fees?
atc
atccodes
essentialmedicines
activeingredients
updated 4.5 years ago by
GenoMax
153k • written 4.5 years ago by
victoria.r.ibarra
• 0
2
votes
1
reply
1.8k
views
Cytoscape - how do I change the node size relative to number of edges?
cytoscape
software-error
updated 2.5 years ago by
Ram
45k • written 4.5 years ago by
gemmalouisebaldock
▴ 20
0
votes
0
replies
830
views
Job:
Postdoctoral Research Fellow position in neurodevelopmental genetics research
R
genome
next-gen
updated 2.2 years ago by
Ram
45k • written 4.5 years ago by
ryan.yuen
• 0
3
votes
4
replies
13k
views
What absolute copy number would you call an Amplification?
SNP
genome
snparray
copy-number
updated 3.5 years ago by
Ram
45k • written 10.7 years ago by
senowinski
▴ 30
1
vote
2
replies
904
views
I carried out a BLASTp search for protein A1 from organism A. It produced a match for protein B1 from organism B. When I then conducted a BLASTp sear…
BLAST
sequence
protein
BLASTp
gene
4.5 years ago by
anna.dowd
• 0
0
votes
4
replies
1.2k
views
Package lncDIFF input files format
RNA-Seq
updated 2.3 years ago by
Ram
45k • written 4.5 years ago by
valopes
▴ 30
0
votes
0
replies
661
views
Silent error in CNVkit genemetrics
cnvkit
software error
4.5 years ago by
apmills
• 0
0
votes
0
replies
1.4k
views
GWAS q-q plot showing lots of "1's" and a flat line with logistic regression
gwas
qqplot
plink
4.5 years ago by
Vanish007
▴ 50
3
votes
7
replies
2.5k
views
DiffBind analysis - minCount parameter in dba.count()
ChIP-Seq
DiffBind
3.5 years ago by
vk
▴ 40
6
votes
2
replies
1.7k
views
Concatenating single gene alignments
Panaroo
Multiple sequnce alignment
MSA
R
updated 4.5 years ago by
Ram
45k • written 4.5 years ago by
matejasoretic
▴ 10
0
votes
0
replies
1.6k
views
Cannot recalculate Kimura distance values - Repeatmasker
genome
repeats
repeatmasker
4.5 years ago by
panosprov
▴ 10
6
votes
23
replies
3.9k
views
Removing Illumina PCR primer sequences from TSA for GenBank upload
GenBank
assembly
primer
4.5 years ago by
Michael
56k
0
votes
3
replies
3.3k
views
Problems specifying data.type and sample.type in TCGAbiolinks GDCquery
tcga
tcgabiolinks
r
updated 19 months ago by
jain72744
▴ 10 • written 4.5 years ago by
loughrae
▴ 90
0
votes
0
replies
1.2k
views
Mutect2 failing to produce F1R2.tar.gz and stat files on TCGA bams (tumor-normal pairs)
next-gen
mutect2
updated 4.5 years ago by
GenoMax
153k • written 4.5 years ago by
tb_2020
• 0
0
votes
4
replies
2.0k
views
RNA-SEQ data, reads count zero
RNA-Seq
updated 4.5 years ago by
EagleEye
7.6k • written 4.5 years ago by
wschen97
• 0
5
votes
2
replies
2.4k
views
RNA-Seq data, batch effect source
RNA-Seq
updated 4.5 years ago by
Biostar
20 • written 8.1 years ago by
lu.ne
▴ 70
6
votes
4
replies
1.8k
views
Cytoscape - long list of proteins, very messy result
software error
4.5 years ago by
gemmalouisebaldock
▴ 20
0
votes
0
replies
920
views
Q-Q plot for p-value from HWE exact test
Q-Q plot
Hardy-Weinberg
p-value
GWAS
QC
4.5 years ago by
panacotaforcota
• 0
121,911 results • Page
697 of 2439
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Comment: RNA-SEQ where only a subset of genes is of interest
Answer: GrCh37 or GrCh38? That is the question.
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Comment: Developing a genomics ML model using bytes?
by
dariober
15k
> what if we can use the bytes to develop a model? My understanding is that the OP is considering building a model using the sequences in …
Comment: WGCNA package in R: dendogram plot error
by
RJ
• 0
You might had delete the outliers from the expression table but then the traits data.frame doesn't match with expression table dimensions.
Comment: miRNA low mapping ratings
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No, it's a personal dataset. I haven’t seen the link, but if I understand correctly, it's not possible to use the software for free, right?
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153k
So this is a public dataset? QIAseq miRNA libraries may require special handling. Have you seen --> https://resources.qiagenbioinformatics.…
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Are you referring to software found here --> http://download.arb-home.de/release/latest/ ? If so why are you installing the source. Authors…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
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153k
All valid points. This is a SRA dataset. If it is covered by a publication hopefully it is not a bad one. @Pranav if you can post the SRA a…
Answer: Different UMAP for batch correction in R and Pytho
by
antonioggsousa
3.4k
Hi, I'm mostly an R user, but the codes you presented look correct to me. The two UMAP projections *"look too similar to be different"*, …
Answer: How to properly assemble phage genomes?
by
Joe
22k
This might help: https://millardlab.org/lab-members/alumni/lucy-gannon/lucys-beginner-guide-to-bacteriophage-genome-assembly/
Comment: RNA-SEQ where only a subset of genes is of interest
by
piffelpaff
• 0
Thanks for your reply. Yes it's single-cell and we're talking about roughly 30 pre-selected genes. I see. I was rather referring to the d…
Answer: Best set of tools / workflows for predicting the biosynthesis pathways of comple
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Joe
22k
This may not be exactly what you're looking for (kind of the other way around, predicting synthetic clusters from genes rather than the pro…
Comment: Developing a genomics ML model using bytes?
by
ATpoint
89k
How is this different from https://www.biostars.org/p/9615062/
Comment: Shift in RNA 3' position, Term-Seq vs RNASeq
by
npb27
▴ 20
Hi thanks for your answer Interesting idea about ribosome length, although I can't think why this should affect the apparent 3' position b…
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by
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89k
Is this single-cell? How many genes are we talking about? > The alternative would be to just use the raw data without normalization, run W…
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89k
So essentially you work on a compression algorithm, is it? If so, be sure to bechmark your idea against the hundreds of existing and fast c…
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antonioggsousa
3.4k
Hi, I'm not familiar with this package or function, but from the function documentation that you had provided in the link, it says about …
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