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122,211 results • Page
696 of 2445
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Rank
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Votes
Replies
0
votes
2
replies
1.6k
views
Lengths of UTR3, UTR5 and ORF from gtf file
UTR
ORF
4.7 years ago by
bio_elle
▴ 10
0
votes
4
replies
1.6k
views
Plotting PCA and Admixture for CNVs
R
updated 4.7 years ago by
Ram
45k • written 4.7 years ago by
hosin
• 0
2
votes
4
replies
1.9k
views
How to download viral subset of the UniProt Reference Clusters?
swissprot
database
uniprot
updated 4.6 years ago by
Elisabeth Gasteiger
★ 2.4k • written 4.7 years ago by
traditionalGuy
▴ 60
0
votes
1
reply
2.4k
views
Dispersion and variance in RNA-seq explained.
RNA-Seq
updated 3.7 years ago by
Ram
45k • written 4.7 years ago by
Palgrave
▴ 140
0
votes
0
replies
1.2k
views
How do I solve "incompatible numba" while installing Scanpy?
RNA-Seq
alignment
4.7 years ago by
Olalekan
• 0
0
votes
3
replies
2.6k
views
antismash 5.0 (New region concept) - counting BGCs
antismash
metagenomics
updated 4.7 years ago by
timothy.kirkwood
▴ 140 • written 5.2 years ago by
arshad1292
▴ 110
0
votes
0
replies
1.2k
views
merge DRAGEN vcf
structuralvariants
DRAGEN
mergevcf
updated 4.7 years ago by
Jorge Amigo
14k • written 4.7 years ago by
matteo.digiacobbe
• 0
0
votes
0
replies
1.1k
views
How to interpret output of SAM/SAMseq in R (samr package)
R
updated 4.7 years ago by
Biostar
20 • written 4.8 years ago by
graeme.thorn
▴ 110
0
votes
0
replies
1.1k
views
SAM: why NM and MD tag are changed by the picard tool SetNmMdandUqtag ?
alignment
gatk
sam
4.7 years ago by
quentin54520
▴ 120
0
votes
3
replies
869
views
emboss skipredundant issue
alignment
sequence
updated 4.7 years ago by
GenoMax
154k • written 4.7 years ago by
yarongeffen
• 0
0
votes
0
replies
807
views
ENSEMBL bigwig RNA-seq tracks for single-gene visual inspection
RNA-Seq
tracks
bigwig
ensembl
zebrafish
4.7 years ago by
bernarda
• 0
0
votes
2
replies
1.3k
views
Which Bioinformatic tools are used for NRPS Domain analysis?
NRPS
NRPS analysis
Domain prediction
updated 4.7 years ago by
timothy.kirkwood
▴ 140 • written 6.7 years ago by
kittyatika
• 0
9
votes
3
replies
1.7k
views
Should I contact an author if I can (or cannot) find their data ?
reads
dataset
publication
updated 4.7 years ago by
Michael
56k • written 4.7 years ago by
bowog86217
▴ 20
1
vote
2
replies
1.6k
views
Does Jellyfish k-mer counting tool give wrong k-mers?
software error
4.7 years ago by
rubyeat88
▴ 10
1
vote
2
replies
974
views
Want to know whether this p-adj value is acceptable
RNA-Seq
next-gen
sequencing
updated 4.7 years ago by
ATpoint
90k • written 4.7 years ago by
ashwing.kofficial
▴ 10
50
votes
20
replies
8.6k
views
18 follow
Forum:
Explain bioinformatics to a 10 year old
bioinformatics
updated 2.7 years ago by
Ram
45k • written 9.7 years ago by
novice
★ 1.1k
0
votes
0
replies
650
views
Gene Ontology with Locus referring
GO
gene
4.7 years ago by
rrapopor
▴ 40
0
votes
0
replies
734
views
Plotting PCA and Admixture for CNVs
genome
4.7 years ago by
hosin
• 0
0
votes
2
replies
1.2k
views
Discrepancy between Genome Browser hg19 phyloP Score and that of wig data
phyloP
genome browser
4.7 years ago by
progistar
▴ 40
2
votes
2
replies
5.1k
views
Whole Blood Gene Expression Deconvolution
expression
updated 4.7 years ago by
Biostar
20 • written 11.6 years ago by
michaelsbreen1
▴ 90
1
vote
5
replies
2.4k
views
chi squared assesment of gene expression and batch effect
RNA-Seq
r
chi squared
4.7 years ago by
RNAseqer
▴ 300
0
votes
1
reply
1.5k
views
model matrix error message 'unequal columns/rows' when using a conditional variable
rna-seq
categorical variables
edger
updated 4.7 years ago by
Gordon Smyth
★ 8.6k • written 4.7 years ago by
RNAseqer
▴ 300
0
votes
5
replies
2.1k
views
I am scaffolding using HiC data and found many contigs are out of the chromosome. Please help me.
sequencing
assembly
updated 4.7 years ago by
Michael
56k • written 4.7 years ago by
tengwen2018
• 0
4
votes
3
replies
1.5k
views
Vertically merge dataframes in R from a list
R
4.7 years ago by
ellieuk
▴ 40
0
votes
2
replies
1.2k
views
How to make paired-end sequencing multi-mapping reads have only the optimal two reads
RNA-Seq
alignment
sequencing
4.7 years ago by
minghuiguo448
• 0
0
votes
1
reply
1.0k
views
Deletions together with SNVs on BAM files
alignment
sequencing
genome browser
4.7 years ago by
baliczap
• 0
2
votes
0
replies
910
views
3D distance between two chromosomal coordinates in 3D human genome?
3d
hi-C
genome
chia-pet
updated 2.7 years ago by
Ram
45k • written 4.7 years ago by
robert.mclaughlin
▴ 20
0
votes
0
replies
829
views
copy number of gene in the gap of segmentation file
WES
copy number
sequenza
4.7 years ago by
xiaoqiaoliu
• 0
0
votes
1
reply
938
views
Nesting a covariate for differential expression design
RNA-Seq
nested
covariates
updated 4.7 years ago by
Biostar
20 • written 4.7 years ago by
RNAseqer
▴ 300
2
votes
2
replies
2.0k
views
Why PLINK is producing different LD result with the same dataset?
SNP
sequence
genome
R
software error
updated 4.7 years ago by
Sam
★ 4.8k • written 4.7 years ago by
anikcropscience
▴ 270
0
votes
2
replies
2.9k
views
How to compute the "completeness" of a KEGG module using a set of KEGG orthologs? (Module Completion Ratio)
kegg
database
metagenomics
module
updated 4.7 years ago by
Mensur Dlakic
★ 30k • written 4.7 years ago by
O.rka
▴ 750
1
vote
5
replies
3.5k
views
Soft-clipping of a BAM file based on regions from the BED file
rna-seq
updated 4.6 years ago by
Pierre Lindenbaum
166k • written 4.7 years ago by
lechu
▴ 20
3
votes
2
replies
2.0k
views
Forum:
If I want to learn bioinformatics as a computer scientist, would it help to learn Data science and Machine Learning first?
computer-scientist
machine-learning
updated 2.7 years ago by
Ram
45k • written 4.7 years ago by
bianca.iii99
• 0
0
votes
2
replies
1.6k
views
Lmfit function, to analyse differential expressions, not coming from arrays
gene
updated 4.7 years ago by
Devon Ryan
105k • written 4.7 years ago by
claire.lamaison
• 0
0
votes
6
replies
3.2k
views
IDT xGen Exome Research Panel v2 vs Twist Human exome core
next-gen
genome
sequence
updated 4.7 years ago by
German.M.Demidov
★ 3.0k • written 4.7 years ago by
nickmarinakis92
▴ 20
2
votes
1
reply
979
views
How do I make my code go through all through my list in my file.
sequence
updated 4.7 years ago by
Andrzej Zielezinski
11k • written 4.7 years ago by
trejomarco6
• 0
1
vote
1
reply
2.5k
views
Download pfam sequence
sequence
updated 4.7 years ago by
Biostar
20 • written 5.6 years ago by
saadleeshehreen
▴ 140
0
votes
1
reply
1.3k
views
Cheat Sheet for NGS data analysis
next-gen
cheat-sheet
guidebook
pdf
NGS
4.7 years ago by
angsudas62
• 0
3
votes
5
replies
1.9k
views
Forum:
Hide Emails from Guests
meta
biostars
updated 2.7 years ago by
Ram
45k • written 5.0 years ago by
bioinformatics2020
▴ 840
7
votes
9
replies
1.5k
views
6 follow
Bioinformatics research work
genome
snp
assembly
updated 4.7 years ago by
Michael
56k • written 4.7 years ago by
sa2020ad1
• 0
0
votes
1
reply
1.8k
views
Is there any software/tool that can be used to identify/count the number of feed forward loops and feedback loops in the gene regulatory networks?
Biological Networks
Systems Biology
updated 4.7 years ago by
Biostar
20 • written 8.3 years ago by
sunifeb12
• 0
0
votes
0
replies
579
views
STRING databases in exome sequencing
genome
4.7 years ago by
storm1907
▴ 30
0
votes
3
replies
1.0k
views
Problem installing bioconductor package 'sesameData' (R 4.0, Bioc 3.12)
R
bioconductor
sesameData
sesame
TCGAbiolinks
4.7 years ago by
mario.red8976
▴ 140
5
votes
2
replies
1.9k
views
Question about the sped of the global pairwise alignment of Bio.pairwise.align.globalms and Align.PairwiseAligner()
Python
pairwise global aignment
4.7 years ago by
master_zhen
▴ 10
0
votes
1
reply
844
views
How to normalise read depth in scRNA-seq data, with usegalaxy
scRNA-seq
read-depth
4.7 years ago by
ikokkinopoulos
• 0
1
vote
3
replies
25k
views
Converting .txt into .fasta
sequence
updated 4.7 years ago by
raavi21198
▴ 20 • written 4.7 years ago by
trejomarco6
• 0
4
votes
4
replies
2.1k
views
Gene ID problems when mapping and counting
RNA-Seq
4.7 years ago by
hellocita
▴ 40
0
votes
0
replies
852
views
Looking to annotate concatenated VCF files on Galaxy for Hg19 reference genome. Need setup guidance.
genome
next-gen
sequencing
sequence
gene
updated 4.7 years ago by
Biostar
20 • written 4.8 years ago by
screadore
▴ 20
0
votes
1
reply
1.1k
views
Post Alignment basic QC of RNA-Seq data
alignment
RNA-Seq
updated 4.7 years ago by
swbarnes2
15k • written 4.7 years ago by
daewowo
▴ 80
0
votes
0
replies
1.4k
views
mummerplot - providing ranges for x and y axes
mummer
nucmer
mummerplot
updated 4.7 years ago by
Ram
45k • written 4.8 years ago by
langziv
▴ 70
122,211 results • Page
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@kevin thanks I was experimenting with the following since I already pursued most of the approaches you mentioned and, in practice, they ar…
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▴ 10
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Got it! I will try to switch their name and re-run the cellranger arc. Thank you very much, @arup !
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The barcode files with 24nt read length W71_LUNGrep2_S6_L001_R3_001.fastq.gz and W71_LUNGrep2_S6_L002_R3_001.fastq.gz should be the R2.
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I don't believe merqury ignores softmasked (lower case) nucleotides so I don't think that is the case. From what it sounds like, during th…
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thanks for the quick reply. i posted the screenshot. gatk-internally, there is still the difference using -ERC or not, priot is getting …
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here the igv view. showing the histogram for all samples plus the reads for one: ![enter image description here][1] and expanded view of …
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Check the read lengths to make sure the files are correct.
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By sequence. Thank you for your response!
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