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121,909 results • Page 695 of 2439
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Best way to download a subsection of a genome that matches a search query on NCBI's Blast?
blast ncbi alignment
4.5 years ago by Tom ▴ 20
2
votes
8
replies
2.5k
views
How to run Blastn on an input data with manual database?
ncbi+ blast
4.5 years ago by mthm ▴ 80
0
votes
2
replies
1.0k
views
Help in testing alligning this one RNA-seq data
rna-seq hisat2
4.4 years ago by qmarulfiz ▴ 60
1
vote
0
replies
1.1k
views
Job: Postdoc Fellowships - EMBL | Stanford Life Science Alliance
gene genome next-gen-sequencing rna-seq
updated 2.2 years ago by 45k • written 4.5 years ago by ▴ 10
2
votes
2
replies
1.0k
views
GEO2R script for analysing microarray data
R limma
4.5 years ago by raavi21198 ▴ 20
20
votes
7
replies
4.4k
views
6 follow
Why are we assuming genes are not differentially expressed?
rna-seq
4.5 years ago by greyman ▴ 190
0
votes
8
replies
2.8k
views
Different gen identifiers with the same gene name [HTA 2.0 microarrays]
HTA2.0 annotation microarrays
4.4 years ago by Hamtaro ▴ 60
1
vote
2
replies
1.4k
views
preprocess of the nanopore seqeucning data
nanopore cat fastq
updated 4.5 years ago by 48k • written 4.5 years ago by ▴ 80
1
vote
1
reply
1.1k
views
oma-cleanup cannot be executed
OMA
updated 4.5 years ago by ★ 1.1k • written 4.5 years ago by • 0
0
votes
0
replies
649
views
Proximity Extension Assay (PEA) technology
proteomics NPX
4.5 years ago by priyayadavaiims • 0
0
votes
0
replies
542
views
RNA-seq dataset search
RNA-Seq
4.5 years ago by ramyak1912 • 0
0
votes
1
reply
855
views
Meta-analyses "Error: No p-value field found in aa_results.assoc.linear."
snp
updated 3.3 years ago by • 0 • written 4.5 years ago by • 0
0
votes
0
replies
698
views
umap differential pattern of expression
Seurat scRNA-seq
4.5 years ago by LacquerHed ▴ 30
2
votes
2
replies
1.8k
views
Is differential gene expression coupled with differential transcript usage more informative than just differential transcript expression?
RNA-Seq R
4.5 years ago by peter.brockport ▴ 10
0
votes
2
replies
1.2k
views
Which is the best way to work with NCBI data obtaining online partial information from the whole
genbank r python
updated 4.5 years ago by 20 • written 6.5 years ago by • 0
2
votes
1
reply
969
views
How to show statistical significance of overlap of CTCF binding sites
RNA-Seq genome
4.5 years ago by samuel ▴ 260
0
votes
0
replies
669
views
Filter multisample VCF for variants with less than N samples
VCF
4.5 years ago by bjwiley23 ▴ 40
0
votes
1
reply
963
views
how to check significant differential methylation, hypermethylated or hypomethylated betweem case and control groups?
dna_methylation differential_methylation
4.5 years ago by carlos_marchi ▴ 80
9
votes
3
replies
3.7k
views
Question about Finding SRA IDs
software error genome sequencing
updated 4.5 years ago by 153k • written 4.5 years ago by ▴ 30
12
votes
5
replies
8.5k
views
Tool: AGAT - Another Gff/Gtf Analysis Toolkit
gff gtf
updated 2.2 years ago by 45k • written 5.8 years ago by 9.3k
1
vote
6
replies
5.8k
views
Compare boxplot with Wilcoxon test
boxplot wilcoxon ggplot ggpubr
updated 4.5 years ago by 36k • written 4.5 years ago by • 0
0
votes
0
replies
939
views
How to test the effect of covariate (Ex. Age) on a significant PERMANOVA test of beta diversity?
microbiome PERMANOVA Adonis
updated 2.5 years ago by 45k • written 4.5 years ago by • 0
0
votes
2
replies
961
views
MSA score function
alignment
updated 4.5 years ago by 11k • written 4.5 years ago by ▴ 20
2
votes
1
reply
4.0k
views
How to deal with (combine) technical replicates (FPKM vs Read count data) for RNA-Seq experiments?
RNA-Seq replicates read count gene expression
updated 4.5 years ago by 20 • written 7.5 years ago by ▴ 10
0
votes
0
replies
791
views
Problem in making database for metabarcoding using OBITools
software error
4.5 years ago by saeedmn2005 • 0
1
vote
2
replies
1.3k
views
How to save DEXSeq result to a .csv file ?
R RNA-Seq
updated 4 weeks ago by ▴ 10 • written 4.6 years ago by ▴ 60
6
votes
4
replies
963
views
How to create a genome assembler?
Assembly
updated 4.5 years ago by ★ 30k • written 4.5 years ago by ▴ 30
0
votes
1
reply
1.1k
views
How many HSPs does blastn returns by default?
blastn blast alignment hsp
updated 4.5 years ago by ★ 30k • written 4.5 years ago by ▴ 70
0
votes
2
replies
1.3k
views
BBMap Clumpify: Exception in thread "Thread -#"
genome Assembly alignment duplicate
updated 4.5 years ago by ★ 30k • written 4.5 years ago by • 0
6
votes
5
replies
1.6k
views
paired end data with varying read length
RNA-Seq illumina insert size
updated 4.5 years ago by • 0 • written 6.0 years ago by ▴ 60
2
votes
3
replies
1.3k
views
Muscle MSA program
alignment
4.5 years ago by QAZ ▴ 20
1
vote
0
replies
679
views
Contigs in Embls
embl fasta
updated 4.5 years ago by 20 • written 4.7 years ago by ▴ 10
0
votes
2
replies
1.7k
views
Bam splitting index .sbi ?
alignment index gatk
updated 4.5 years ago by 166k • written 4.5 years ago by ▴ 120
2
votes
1
reply
1.2k
views
I am getting error in this command while doing my analysis, please help me to understand this
rna-seq R
updated 4.5 years ago by 13k • written 4.5 years ago by ▴ 30
1
vote
1
reply
3.4k
views
Gviz: How I can add or retrive gene symbol from TxDb.Hsapiens.UCSC.hg38.knownGene
genome
updated 4.5 years ago by • 0 • written 4.8 years ago by ▴ 10
5
votes
3
replies
2.5k
views
error in R
software-error R
updated 2.8 years ago by 45k • written 10.2 years ago by ★ 4.4k
1
vote
1
reply
1.1k
views
gene expression x phenotype correlation
RNA-Seq
updated 4.5 years ago by ★ 8.3k • written 4.6 years ago by ▴ 120
3
votes
1
reply
1.6k
views
Snakemake Checkpoints Aggregate issues
snakemake python wildcards
4.5 years ago by susheelbhanu • 0
2
votes
2
replies
2.0k
views
Interpreting first round of maker
maker busco annotation
updated 4.5 years ago by ★ 2.2k • written 4.5 years ago by ▴ 10
2
votes
4
replies
4.4k
views
how to make correlation heatmap
heatmaps correlation
updated 4.5 years ago by ▴ 190 • written 4.5 years ago by ▴ 130
0
votes
0
replies
1.3k
views
Job: Senior Bioinformatician - AstraZeneca (Cambridge, UK)
cheminformatics biopharma genomics
updated 2.5 years ago by 45k • written 4.5 years ago by ▴ 230
0
votes
5
replies
2.7k
views
few genes were annotated to GO terms using online eggnog-mapper
GO KEGG eggnog-mapper
updated 4.5 years ago by 20 • written 4.6 years ago by ▴ 210
1
vote
3
replies
1.0k
views
Extracellular Vesicle RNA Seq - Abundance of No Feature reads and how to investigate
RNA-Seq
4.5 years ago by russell.stewart.j ▴ 30
0
votes
3
replies
4.0k
views
TypeError: an integer is required (got type bytes)
python exac gnoamd hail
4.5 years ago by Bala Hatun • 0
1
vote
9
replies
2.2k
views
calculate statistically significant miRNA and mRNA target pairs using pearsons correlation
miRNA correlation pearson miRNA-mRNA
updated 4.5 years ago by 22k • written 4.5 years ago by ▴ 20
0
votes
0
replies
1.2k
views
Job: Bioinformatics internships and co-ops (2021) at Stoke Therapeutics. Remote locations in the US.
internship co-op
updated 2.5 years ago by 45k • written 4.5 years ago by ★ 2.2k
5
votes
5
replies
1.5k
views
Question: how to get low quality read from sam file
RNA-Seq alignment
updated 4.5 years ago by 89k • written 4.5 years ago by • 0
2
votes
6
replies
5.5k
views
Weird Tophat2 Error Message
tophat2
updated 4.5 years ago by 20 • written 12.1 years ago by ▴ 290
1
vote
4
replies
1.1k
views
Saving variable number of objects to .xls file
R output data xls
updated 4.5 years ago by 13k • written 4.5 years ago by ▴ 70
0
votes
4
replies
975
views
What to do when having differenet versions of ensembl IDs?
R Bioconductor RNA-Seq
updated 4.5 years ago by 13k • written 4.5 years ago by • 0
121,909 results • Page 695 of 2439
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Tried building a compact sequence format with 4-bit storage
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Recent Replies
Comment: Hifiasm is getting killed while trying to assemble a genome by Panos ★ 1.8k
I don't mean adapter contamination. I mean contamination of your sample with DNA from other organisms. In my previous lab, for example, we …
Comment: Developing a genomics ML model using bytes? by 1769mkc ★ 1.3k
how about fastq.gz?
Answer: Trouble when installing arb by SilentGene ▴ 120
I've got the same error when installing from `arb-6.0.6-source.tgz` and `arb-7.0-source.tgz`. Anyone has any solution?
Comment: Hifiasm is getting killed while trying to assemble a genome by pranavdatar01 • 0
Yes, I did check for adaptor contamination, and did not find any. I have kept all the reads with quality score of more than 30.
Comment: Hifiasm is getting killed while trying to assemble a genome by Panos ★ 1.8k
No overlapping reads? Have you checked for contamination?
Comment: Tried building a compact sequence format with 4-bit storage by Pranava ▴ 10
I see, but the reason I was planning on using a 4bit system is so that there wouldn't be too much data loss but thank you for the suggesti…
Comment: Splice junctions plots for long-read seq data by alison.ludzki • 0
Thank you! I will check out miso!
Comment: Hifiasm is getting killed while trying to assemble a genome by pranavdatar01 • 0
I did subsample the data to 30x coverage. I did run hifiasm on it, the log file did show some contents, but hifiasm ended again, stating th…
Comment: Tried building a compact sequence format with 4-bit storage by Alex Reynolds 36k
Using four bits for storage won't beat 2bit, of course, but direct access to a sequence of interest sounds interesting and useful and might…
Comment: Hifiasm is getting killed while trying to assemble a genome by Panos ★ 1.8k
Why don't you subsample your HiFi reads and try running hifiasm again? Maybe this will help if you have memory problems. However, I haven't…
Comment: Is total miRNA in EV constant? Implications for library size normalization. by Gordon Smyth ★ 8.3k
RNA-seq is very good at relative analyes. It would be straightforward to determine which miRNAs are relatively more abundant, compared to o…
Comment: Tried building a compact sequence format with 4-bit storage by Pranava ▴ 10
Woah!!! Thank you very much, Matthias. I honestly didn't even know some of those existed and I will definitely go through them and try to u…
Answer: Tried building a compact sequence format with 4-bit storage by Matthias Zepper 5.1k
Hello Pranava, Thanks for sharing your repository. Devising a new file format is an interesting undertaking and certainly a task with many…
Answer: Gene Ontology Enrichment with LOC gene IDs in Common Carp (Cyprinus carpio) by GenoMax 153k
`LOC` gene ID's are often assigned to uncharacterized genes and you may not get useful information from databases for them, thus they will …
Comment: Whole Genome Sequencing IG regions by GenoMax 153k
> are the calls I am seeing reliable or should I take them with something of a pinch of salt? Not sure what calls you are referring to but…
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