updated 2 hours ago by
Gordon Smyth
★
7.0k
•
written 8 months ago by
Calum
▴
10
2
votes
7
replies
1.1k
views
6 follow
0
votes
1
reply
44
views
Forum:
Finding batch and outlayers
795
votes
167
replies
142k
views
109 follow
updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
17
votes
13
replies
809
views
7 follow
0
votes
2
replies
93
views
0
votes
0
replies
44
views
7 hours ago by
carlopecoraro2
★
2.5k
0
votes
4
replies
165
views
0
votes
9
replies
2.4k
views
6 follow
2
votes
5
replies
368
views
8 hours ago by
ashaneev07
▴
20
0
votes
1
reply
97
views
0
votes
1
reply
693
views
1
vote
1
reply
183
views
0
votes
0
replies
63
views
19 hours ago by
rene.j.erhardt
▴
20
0
votes
12
replies
381
views
updated 6 hours ago by
Mensur Dlakic
★
27k
•
written 1 day ago by
Ruqaiya
•
0
1
vote
3
replies
215
views
0
votes
0
replies
92
views
0
votes
0
replies
100
views
0
votes
0
replies
96
views
1 day ago by
Chris
▴
260
0
votes
1
reply
282
views
0
votes
2
replies
292
views
2
votes
3
replies
280
views
updated 1 day ago by
Arup Ghosh
3.2k
•
written 2 days ago by
chaco001
▴
40
1
vote
3
replies
312
views
updated 6 hours ago by
Mensur Dlakic
★
27k
•
written 2 days ago by
O.rka
▴
710
0
votes
1
reply
184
views
updated 1 day ago by
Gordon Smyth
★
7.0k
•
written 2 days ago by
hagl
▴
10
0
votes
2
replies
216
views
2
votes
1
reply
182
views
updated 2 days ago by
Gordon Smyth
★
7.0k
•
written 2 days ago by
pairedttest
▴
10
3
votes
6
replies
1.9k
views
7 follow
0
votes
0
replies
435
views
4
votes
8
replies
558
views
4
votes
7
replies
616
views
7 follow
updated 1 day ago by
dsull
★
5.9k
•
written 5 days ago by
qudrat.nii
▴
10
19
votes
11
replies
14k
views
10 follow
2
votes
2
replies
281
views
3
votes
0
replies
170
views
updated 2 days ago by
Ram
43k
•
written 2 days ago by
Claire Watson
▴
60
0
votes
2
replies
242
views
updated 2 days ago by
Ram
43k
•
written 3 days ago by
The_PyPanda
▴
10
0
votes
0
replies
173
views
3
votes
3
replies
250
views
1
vote
0
replies
134
views
0
votes
0
replies
149
views
0
votes
0
replies
143
views
0
votes
0
replies
136
views
3
votes
3
replies
271
views
0
votes
0
replies
145
views
0
votes
0
replies
159
views
0
votes
1
reply
196
views
updated 3 days ago by
ATpoint
82k
•
written 3 days ago by
AaronJaime
•
0
0
votes
2
replies
260
views
0
votes
2
replies
295
views
updated 3 days ago by
Ram
43k
•
written 3 days ago by
Assa Yeroslaviz
★
1.8k
1
vote
2
replies
299
views
1
vote
6
replies
404
views
1 day ago by
starswillfade
▴
10
0
votes
0
replies
160
views
0
votes
0
replies
155
views
updated 3 days ago by
Ram
43k
•
written 3 days ago by
carlopecoraro2
★
2.5k
Recent Votes
Recent Locations •
All
United States, 2 minutes ago
State College, PA, Penn State, 3 minutes ago
Mexico, 10 minutes ago
Hong Kong, 13 minutes ago
United States, 18 minutes ago
Whitefish, MT, 19 minutes ago
United States, 21 minutes ago
Recent Awards •
All
Teacher to
Jeremy Leipzig
22k
Popular Question to
AshleeThomson
▴
80
Popular Question to
michael.flower.14
▴
180
Popular Question to
Nitin Narwade
★
1.6k
Popular Question to
carlopecoraro2
★
2.5k
Popular Question to
rj.rezwan
•
0
Popular Question to
husensofteng
▴
410
Recent Replies
Comment: NGS forensics: how to know if data is fabricated
by
Philipp Bayer
8.4k
i've been in our org trying to push such a detector, our use-case is much more limited: I want to make simulated eDNA libraries as real as …
Answer: Differential Expression using Isoseq-supplemented reference transcriptome
by
Gordon Smyth
★
7.0k
> What is the best method to test for differential abundance at the isoform level? Salmon returns TPM values instead of the counts which Li…
Answer: Finding batch and outlayers
by
Tigran
•
0
![enter image description here][1]
[1]: /media/images/aa60b9ef-b08c-4093-9f0d-fb656a5c
Comment: NGS forensics: how to know if data is fabricated
by
benformatics
3.9k
Can you post an IGV screenshot of what this looks like?
Comment: NGS forensics: how to know if data is fabricated
by
benformatics
3.9k
Yeah some of the Illumina machines pre-trim adapters (not sure if this is still the standard). I've also definitely also seen quality-trimm…
Comment: PDB related issue
by
noodle
▴
540
You can typically find much more useful info in the cif file, for example what you've found is called '_atom_site.pdbx_PDB_ins_code ' and d…
Comment: PDB related issue
by
Mensur Dlakic
★
27k
The best way to find out is to read the original paper. My guess is that the residue has been crystallized in alternative conformations, wh…
Answer: NGS forensics: how to know if data is fabricated
by
Mensur Dlakic
★
27k
I share the opinion by @philippbayer I have seen enough questionable things in life and in science to keep me permanently jaded, but there…
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★
27k
I downloaded the data in two files from the link you provided. With this command:
megahit -1 ERR072246_1.fastq.gz -2 ERR072246_2.fastq…
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★
27k
If you have Linux the assembly should work on your system, but 8 GB is generally not enough for assembling larger genomes.
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★
27k
I think you might be getting stuck on less relevant parts of my exercise. The most important point was that nothing is wrong with the data.…
Comment: What does it mean single base resolution in sequencing?
by
dsull
★
5.9k
Great comprehensive explanation and overview of the technologies -- with regards to sequencing assays, the one thing I'd add is SNV identif…
Answer: What does it mean single base resolution in sequencing?
by
dsull
★
5.9k
I think that term means slightly different things in different contexts. For example, it's useful to profile mRNA modifications (e.g. m6a) …
Comment: Cannot process all the reads in a fast5 file?
by
chujie
•
0
Hi, I met the same problem, have you found the solution?
Answer: What does it mean single base resolution in sequencing?
by
LauferVA
4.2k
Hi @fe3e6f65 ,
In a single sentence, the answer to your question can be summarized as, "*the resolution of a genomic technology refers to …
Traffic: 1865 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6