0
votes
1
reply
9
views
0
votes
1
reply
80
views
updated 12 minutes ago by
Bastien Hervé
5.3k
•
written 4 hours ago by
mnx0723
•
0
3
votes
4
replies
3.9k
views
updated 2 hours ago by
chloek88
•
0
•
written 5.5 years ago by
Philipp Bayer
8.4k
795
votes
167
replies
143k
views
109 follow
updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
0
votes
2
replies
74
views
9
votes
3
replies
204
views
updated 4 hours ago by
b.contreras.moreira
▴
180
•
written 21 hours ago by
ijarne
•
0
0
votes
0
replies
56
views
1
vote
2
replies
98
views
4 hours ago by
Assa Yeroslaviz
★
1.8k
0
votes
0
replies
45
views
5 hours ago by
Omics data mining
▴
260
0
votes
2
replies
86
views
3 hours ago by
njornet
▴
20
0
votes
1
reply
77
views
0
votes
5
replies
142
views
0
votes
0
replies
60
views
0
votes
5
replies
157
views
2
votes
11
replies
2.6k
views
6 follow
updated 7 hours ago by
DGTool
•
0
•
written 4.8 years ago by
ww22runner
▴
60
0
votes
1
reply
58
views
updated 20 minutes ago by
Bastien Hervé
5.3k
•
written 7 hours ago by
Sumeet
•
0
2
votes
1
reply
67
views
8 hours ago by
analyst
▴
50
0
votes
0
replies
43
views
0
votes
0
replies
39
views
9 hours ago by
usa.cd.genomics
•
0
0
votes
0
replies
40
views
9 hours ago by
usa.cd.genomics
•
0
0
votes
0
replies
56
views
14 hours ago by
kyj222637
•
0
0
votes
1
reply
62
views
updated 28 minutes ago by
Bastien Hervé
5.3k
•
written 14 hours ago by
sooni
▴
20
1
vote
5
replies
363
views
0
votes
1
reply
210
views
updated 16 hours ago by
mizraelson
▴
60
•
written 8 days ago by
yueli7
▴
250
0
votes
2
replies
126
views
0
votes
0
replies
59
views
17 hours ago by
synat.keam
▴
100
0
votes
2
replies
106
views
1
vote
4
replies
313
views
20 hours ago by
heelpPlease
•
0
0
votes
6
replies
352
views
7 hours ago by
JACKY
▴
140
0
votes
3
replies
211
views
0
votes
0
replies
82
views
1 day ago by
carlopecoraro2
★
2.5k
0
votes
2
replies
431
views
updated 17 hours ago by
Javier
•
0
•
written 3 months ago by
fra.r.silvestro
▴
10
0
votes
1
reply
110
views
5
votes
5
replies
234
views
0
votes
1
reply
115
views
updated 1 day ago by
ATpoint
82k
•
written 1 day ago by
ahmad.sajad4541
•
0
1
vote
5
replies
180
views
updated 1 day ago by
i.sudbery
19k
•
written 1 day ago by
Assa Yeroslaviz
★
1.8k
1
vote
1
reply
133
views
0
votes
0
replies
86
views
1 day ago by
analyst
▴
50
0
votes
3
replies
148
views
6
votes
1
reply
132
views
2
votes
2
replies
147
views
12 hours ago by
Zeng Jingyu
▴
60
1
vote
2
replies
230
views
0
votes
1
reply
106
views
updated 4 hours ago by
manaswwm
▴
510
•
written 1 day ago by
Researcher
▴
30
1
vote
2
replies
154
views
1
vote
1
reply
195
views
1
vote
5
replies
293
views
updated 6 hours ago by
Michael
54k
•
written 1 day ago by
qwertyuiop26
•
0
0
votes
1
reply
152
views
0
votes
2
replies
201
views
updated 1 day ago by
Xiaofen
•
0
•
written 1 day ago by
toddknutson
▴
60
0
votes
1
reply
124
views
Recent Votes
Recent Locations •
All
Bologna, 1 minute ago
United Kingdom, 2 minutes ago
Memphis, TN, 2 minutes ago
United States, 4 minutes ago
United States, 4 minutes ago
United Kingdom, 6 minutes ago
Hungary/Szeged/BRC, 6 minutes ago
Recent Awards •
All
Popular Question to
nhaus
▴
350
Popular Question to
Chris
▴
280
Popular Question to
chenl
▴
10
Popular Question to
User000
▴
690
Popular Question to
ingerslev
•
0
Recent Replies
Answer: How can I analyze normalized expression data?
by
Bastien Hervé
5.3k
This has been issued a dozen times before. Have a look at Limma package.
https://support.bioconductor.org/p/126817/
https://support.bioco…
Comment: Error in plotting PCA plot in seurat
by
Bastien Hervé
5.3k
Without your code, it is impossible to make any statement. Please provide the code generating that issue.
By googling, here is a [similar …
Comment: A question about reference genome for creating the consensus sequence
by
me
•
0
Hi, thanks for your information. I am a bit confused now. Does this mean the cram file already contained reference genome information? I in…
Comment: PseudobulkExpression.Seurat error
by
Bastien Hervé
5.3k
> None of the requested assays are present in the object
Does the assay `originalexp` exist in your object `seurat_from_cds` ?
Comment: identifying transgene insertion site in WGS
by
Cameron.walker9900
•
0
When calling for SVs using gridds, should I use the reference genome that I added my transgene to, or should I use the unedited reference?
Comment: Question regarding WGCNA
by
deepak
•
0
Thank for the reply. I am running this code:
# set a set of soft-thresholding powers
powers = c(c(1:20), seq(from = 22, to=30, by=2))
# Ca…
Comment: RNA seq analysis
by
prifa
•
0
thank you for your reply Zepper, a bit clarification, I took all the samples from SRA data table, but yes from different lab and also diffe…
Comment: RNA seq analysis
by
Matthias Zepper
4.6k
That you have a varying number of replicates is not ideal ([see here why][1]), but manageable. See for example the [Specific experimental d…
Comment: Percentage coverage of reference genome by de novo genome
by
Joe
21k
OK, in that case it should be even easier as its just a single pairwise alignment, so the same advice holds.
Comment: FarmCPU - how to explain the reported 'effect'?
by
chloek88
•
0
Hi Phillip,
Did you ever figure out the answer to this? I also have rMVP results with a column 'effect', values ranging from ~-1.4 to +1…
Comment: Soft-clipping read ends based on read group
by
chenl
▴
10
Hi,
Can you please share how did you clip both ends of the reads with ClipReads? Clipping form the start with `-CT "1-3"` for instance wor…
Comment: Phasing a mixture of two individuals' DNA with long reads
by
njornet
▴
20
This is related to that other question but for now, the only thing I'm interested in is separating the three unique chromosomes, without as…
Comment: A question about reference genome for creating the consensus sequence
by
GenoMax
142k
> I wonder how to adjust the base genome.
If you are looking to make changes to the reference you used for alignment then look into http…
Comment: Phasing a mixture of two individuals' DNA with long reads
by
GenoMax
142k
We had a related discussion in a prior thread by OP: https://www.biostars.org/p/9593780/
Do you have genotype (or independent sequence) da…
Answer: TFs and Gene databases
by
b.contreras.moreira
▴
180
I can also suggest <https://footprintdb.eead.csic.es> which links TFs to their DNA motifs, not their gene targets.
Traffic: 2609 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6