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Comment: imputation through beagle
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analyst
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Thank you so much dthorbur. Yes I am new to imputation analysis. I will follow your kind suggestions.
Thanks again!
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I don't know but another way of doing it would be to combine different datasets of different strains that you know are clonal. Then you kno…
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Please check out these posts
https://www.biostars.org/p/367626/
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You can do the following-
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Wondering, if it was total RNAseq data? or ployA
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It is still obscure to me how many different tissues you would like to include into your comparison and what your intended design is.
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Hello, Mathew.
Firstly, thank you for answering my question.
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As long as it is the same GIAB sample you could compare your SNP with the SNP's available for the whole genome set.
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Dear Mensur,
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The relevant code line is precisely the same as in the question.
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Building a reference panel from the samples you intend to impute seems like a very circular approach. Plus, GBS is a reduced representation…
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