updated 1 hour ago by
geneontologyhelp
▴
400
•
written 1 day ago by
Pegasus
▴
100
0
votes
2
replies
143
views
0
votes
2
replies
39
views
0
votes
1
reply
19
views
updated 1 hour ago by
Pierre Lindenbaum
161k
•
written 1 hour ago by
mrk
•
0
0
votes
2
replies
72
views
2
votes
1
reply
57
views
799
votes
167
replies
144k
views
109 follow
updated 3 months ago by
Biostar
2.8k
•
written 7.5 years ago by
Istvan Albert
100k
0
votes
0
replies
25
views
0
votes
2
replies
36
views
2
votes
0
replies
32
views
2 hours ago by
Rafael Soler
★
1.2k
0
votes
0
replies
35
views
2 hours ago by
Fabio Marroni
★
3.0k
0
votes
0
replies
35
views
3
votes
5
replies
392
views
3 hours ago by
beantkapoor16
▴
10
0
votes
1
reply
57
views
0
votes
0
replies
39
views
4 hours ago by
Ayda Ecem
•
0
0
votes
3
replies
89
views
0
votes
3
replies
1.7k
views
updated 4 hours ago by
Arthur
•
0
•
written 3.0 years ago by
giulia.trauzzi
▴
10
1
vote
3
replies
517
views
0
votes
0
replies
49
views
1
vote
1
reply
693
views
17
votes
10
replies
7.3k
views
7 follow
0
votes
0
replies
55
views
0
votes
4
replies
116
views
48 minutes ago by
Zhenyu Zhang
★
1.2k
0
votes
1
reply
83
views
updated 10 hours ago by
Pierre Lindenbaum
161k
•
written 10 hours ago by
Peter Chung
▴
200
0
votes
0
replies
53
views
11 hours ago by
carlopecoraro2
★
2.5k
0
votes
1
reply
93
views
updated 5 hours ago by
Nitin Narwade
★
1.6k
•
written 14 hours ago by
eae6d2e7
•
0
0
votes
0
replies
63
views
15 hours ago by
Christopher
•
0
1
vote
2
replies
163
views
20 hours ago by
ojaswinipandey
•
0
0
votes
2
replies
146
views
3 hours ago by
Bjorn
•
0
1
vote
4
replies
255
views
2
votes
4
replies
197
views
0
votes
3
replies
213
views
updated 20 hours ago by
marco.barr
▴
130
•
written 1 day ago by
Mohamed Samir
▴
20
1
vote
1
reply
97
views
0
votes
0
replies
72
views
updated 21 hours ago by
Ram
44k
•
written 1 day ago by
carlopecoraro2
★
2.5k
2
votes
0
replies
103
views
2
votes
4
replies
362
views
0
votes
1
reply
108
views
updated 5 hours ago by
WouterDeCoster
47k
•
written 1 day ago by
safeassli
▴
10
0
votes
2
replies
183
views
0
votes
1
reply
593
views
updated 1 day ago by
fu_entomology
▴
40
•
written 8 months ago by
juliviglino
•
0
1
vote
2
replies
167
views
0
votes
3
replies
178
views
updated 1 day ago by
Ram
44k
•
written 1 day ago by
Bioinformatics_begginner
▴
20
0
votes
0
replies
81
views
0
votes
1
reply
128
views
updated 1 day ago by
marco.barr
▴
130
•
written 1 day ago by
sooni
▴
20
0
votes
1
reply
95
views
0
votes
0
replies
73
views
0
votes
0
replies
142
views
updated 21 hours ago by
Ram
44k
•
written 1 day ago by
JorgeVallejo
▴
20
0
votes
0
replies
94
views
updated 1 day ago by
Ram
44k
•
written 1 day ago by
Asim Bin Arshad
•
0
0
votes
5
replies
220
views
7
votes
14
replies
2.9k
views
6 follow
0
votes
1
reply
138
views
0
votes
4
replies
243
views
updated 1 day ago by
Matthias Zepper
4.6k
•
written 1 day ago by
sooni
▴
20
Recent Votes
Recent Locations •
All
United States, just now
United States, just now
United States, 1 minute ago
Mexico, 1 minute ago
Germany, 1 minute ago
Canada, 3 minutes ago
United States, 4 minutes ago
Recent Awards •
All
Popular Question to
Rafael Soler
★
1.2k
Popular Question to
applepie
•
0
Popular Question to
Peter Chung
▴
200
Popular Question to
ev97
▴
20
Popular Question to
Lluís R.
★
1.2k
Recent Replies
Comment: How can we convert a vcf to fasta, so that I can blast some genes against that w
by
Ram
44k
You cannot *convert* a VCF to a FASTA as they have vastly different information content. Please explain your process - what exactly do you …
Comment: Comparing Analysis Strategies for scRNA-seq Data: Separate vs. Merged Analysis o
by
Shukai
•
0
Thank you Ram for the comments! Noted for future posts.
Comment: Where to find old version of GATK best practice
by
Zhenyu Zhang
★
1.2k
I am looking for diagrams, and step-by-step instructions of how to build my pipelines.
I think the github is only helpful if you are a wdl…
Comment: Where to find old version of GATK best practice
by
Zhenyu Zhang
★
1.2k
oh, this is helpful. Thanks.
Comment: Comparing Analysis Strategies for scRNA-seq Data: Separate vs. Merged Analysis o
by
Ram
44k
1. You can edit your post and add relevant details. There is no need to add separate comments with relevant details especially when it's no…
Answer: Functional enrichment analysis for unique gene IDs
by
geneontologyhelp
▴
400
If you are looking at producing GO annotations, we currently only recommend InterProScan, and basically only for novel organisms or where t…
Answer: Question about samtools view flags (paired reads vs. properly paired reads)
by
Pierre Lindenbaum
161k
paired reads = the experiment was a paired end assay: each fragment was sequenced on 5' and 3', two FASTQ files are generated by the seque…
Answer: z-score of gene set
by
Matthias Zepper
4.6k
The z-score is a measure of how many standard deviations a particular data point is from the mean of a distribution. A positive z-score ind…
Answer: converting transcript IDs (Ensembl) to gene symbols in R
by
bk11
★
2.5k
You can do as following:
library(biomaRt)
# Set up the Ensembl BioMart connection
ensembl <- useEnsembl(biomart = "genes",…
Comment: How can we convert a vcf to fasta, so that I can blast some genes against that w
by
Pierre Lindenbaum
161k
well you try to use FastaAlternateReferenceMaker https://gatk.broadinstitute.org/hc/en-us/articles/360037594571-FastaAlternateReferenceMak…
Comment: z-score of gene set
by
bk11
★
2.5k
Can you please tell us what will be your propose of z-score calculation?
Comment: DRAGEN gVCF files and joint calling GATK-GenomicsDB
by
DBScan
▴
300
I think I did it once, but why would you use GATK with DRAGEN gVCF files? If you have a DRAGEN, the iterative gVCF Genotyper does a much fa…
Answer: Practical Haplotype Graph v2 not finding correct paths
by
beantkapoor16
▴
10
So, I just tested it and it's performing much better now. Most of the haplotype paths are coming from the expected haplotypes (australasica…
Comment: Generating a Bed file from a Fasta file
by
Pierre Lindenbaum
161k
there is not enough information. you have to show us the command you used, a snapshot of your fasta...
Traffic: 2802 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6