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316 results • Page 4 of 7
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11
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5
replies
4.8k
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Forum: Bioinformatics Workstation Suggestions
RNA-Seq next-gen workstation
updated 11 months ago by 44k • written 4.9 years ago by ▴ 110
12
votes
5
replies
2.6k
views
Forum: We Need Your Input! Help Get Information For The Informatics Community And Get A Free Gift Card!
algorithm ngs
updated 11 months ago by 44k • written 11.0 years ago by ▴ 30
4
votes
5
replies
1.4k
views
Forum: I'm looking for a mentor in Bioinformatics
mentor teaching
updated 3 months ago by • 0 • written 13 months ago by • 0
19
votes
5
replies
1.2k
views
6 follow
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2023?
genomics snps survey papers
5 months ago by Raony Guimarães ★ 1.4k
3
votes
5
replies
1.5k
views
Forum: Cooperation for scientific project (python, deep learning, image recognition, histological images)
deep-learning python image-recognition
updated 12 months ago by 44k • written 5.6 years ago by ▴ 40
11
votes
5
replies
6.5k
views
Forum: Slurm, Son of Grid Engine, Mesos, and Hadoop YARN vs HTCondor and Torque
PBS HPC SDSC Torque
updated 12 months ago by 44k • written 5.8 years ago by ★ 9.4k
6
votes
5
replies
1.1k
views
Forum: A free temporary HPC service for bioinformatic analysis
HPC
updated 11 months ago by 44k • written 4.2 years ago by ▴ 340
7
votes
5
replies
962
views
Forum: scRNA rising in popularity, what comes next?
scRNA
updated 11 months ago by 44k • written 4.1 years ago by ▴ 20
6
votes
5
replies
964
views
Forum: Tips on: How to organise data on servers
genotype warehouse servers
updated 11 months ago by 44k • written 4.5 years ago by ▴ 110
2
votes
5
replies
983
views
6 follow
Forum: Biostar as a next generation version
meta mobile-app
updated 7 months ago by 44k • written 8 months ago by • 0
5
votes
5
replies
2.4k
views
Forum: BCL files as deliverables from a sequencing center
core-facility service-provider
updated 11 months ago by 44k • written 5.0 years ago by 5.2k
4
votes
5
replies
1.3k
views
Forum: Is Bioinformatics enough? Is it taken seriously?
career
updated 11 months ago by 44k • written 3.5 years ago by • 0
6
votes
5
replies
1.4k
views
7 follow
Forum: What do you think of sci-hub?
sci-hub
updated 11 months ago by 44k • written 4.4 years ago by • 0
4
votes
5
replies
1.4k
views
7 follow
Forum: Career related query
MSc career
updated 12 months ago by 44k • written 5.4 years ago by ▴ 10
7
votes
5
replies
1.8k
views
Forum: Which is better: webgestalt vs david?
webgestalt david
updated 12 months ago by 44k • written 5.2 years ago by ★ 9.4k
11
votes
5
replies
1.5k
views
Forum: What bioinformatic training?
training RNA-Seq illumina
updated 11 months ago by 44k • written 5.0 years ago by ▴ 150
4
votes
4
replies
1.7k
views
Forum: When will the hg19/grch37 finally become obsolete?
Reference-Genome
updated 11 months ago by 44k • written 5.0 years ago by ▴ 10
10
votes
4
replies
5.9k
views
Forum: Bioinformatics: Which language should I learn
programming
updated 11 months ago by 44k • written 5.0 years ago by • 0
13
votes
4
replies
1.3k
views
Forum: The shortcoming of shiny app in building webserver
R shiny webserver
updated 11 months ago by 44k • written 4.7 years ago by ▴ 120
4
votes
4
replies
1.2k
views
Forum: What skills are required for an informatics scientist?
informatics scientist
updated 11 months ago by 44k • written 5.0 years ago by ★ 9.4k
0
votes
4
replies
2.2k
views
Forum: Multiple Sequence Alignment Applications
snp
updated 11 months ago by 44k • written 4.8 years ago by • 0
3
votes
4
replies
1.9k
views
Forum: Recommendation for applied bioinformatics labs focusing on cancer biology
cancer-genomics
updated 12 months ago by 44k • written 5.7 years ago by ▴ 100
3
votes
4
replies
1.0k
views
Forum: Survey - Tell me about your Bioinformatics struggles
multiomics RNA-Seq dna-seq computational-biology
updated 12 months ago by 44k • written 5.5 years ago by • 0
6
votes
4
replies
2.5k
views
Forum: Ru/Read Until in Nanopore sequencers
Oxford-Nanopore alignment sequencing
updated 11 months ago by 44k • written 4.3 years ago by ★ 1.7k
7
votes
4
replies
1.9k
views
Forum: I'm currently in my second year of my phd, I'm intrested to develop somthing for galaxy server
workflow galaxy
updated 12 months ago by 44k • written 5.6 years ago by • 0
5
votes
4
replies
1.4k
views
Forum: Best BAM viewer in 2022
sam bam
updated 11 months ago by 44k • written 18 months ago by ▴ 70
3
votes
4
replies
1.4k
views
Forum: Discussion: Uploading terabytes of data to NCBI SRA
NCBI WGS archiving servers remote
updated 9 months ago by 142k • written 9 months ago by ▴ 130
3
votes
4
replies
2.8k
views
Forum: hands on resources for high school students with advanced CS skills
informatics education high-school
updated 12 months ago by 44k • written 5.8 years ago by 4.2k
2
votes
4
replies
1.3k
views
Forum: Transitioning from Wet Lab to Computational Biology as a PhD Student/Surgeon
RNA-Seq sequencing
updated 11 months ago by 44k • written 4.1 years ago by ▴ 10
5
votes
4
replies
1.2k
views
Forum: Consider CodeOcean or other solutions for runnable Biostars answers?
CodeOcean how-to meta
updated 11 months ago by 44k • written 4.0 years ago by 22k
5
votes
4
replies
621
views
Forum: Would reaching out to local labs and startups help with my career transition?
career volunteering
updated 3 months ago by 142k • written 3 months ago by ▴ 10
1
vote
4
replies
1.8k
views
Forum: What do you want to learn about bioinformatics?
course education
updated 12 months ago by 44k • written 5.4 years ago by ▴ 120
12
votes
4
replies
1.6k
views
Forum: Bioinformatics and biotechnology market in future.
genome next-gen
updated 11 months ago by 44k • written 4.8 years ago by • 0
4
votes
4
replies
1.1k
views
Forum: Kubernetes in Production?
ci-cd webservice kubernetes docker
updated 11 months ago by 44k • written 4.4 years ago by • 0
0
votes
4
replies
1.0k
views
Forum: Genes inhibiting each other's expression
Gene-expression
updated 11 months ago by 44k • written 3.7 years ago by ▴ 60
7
votes
4
replies
2.0k
views
Forum: Bioinformatics / Computational Biology PhD
Computational-Biology bioinformatics PhD
updated 10 months ago by 44k • written 8.3 years ago by • 0
7
votes
4
replies
1.5k
views
Forum: Studying for a Bioinformatics degree
sequence R next-gen gene RNA-Seq
updated 11 months ago by 44k • written 4.4 years ago by ▴ 20
7
votes
4
replies
1.1k
views
Forum: [Meta] Use of AI
AI Artificial-Intelligence meta ChatGPT
updated 11 months ago by 44k • written 11 months ago by 4.2k
3
votes
3
replies
964
views
Forum: Importance of Data Structures for Bioinformatics?
data-structures
updated 8 months ago by 44k • written 8 months ago by • 0
0
votes
3
replies
3.6k
views
Forum: How to know that our trinity denovo assembly is good or not?
Assembly
updated 12 months ago by 44k • written 5.5 years ago by • 0
1
vote
3
replies
811
views
Forum: Spaceranger missing spatial coordinates [Discussion]
Visium
updated 9 months ago by 142k • written 9 months ago by ▴ 550
4
votes
3
replies
829
views
Forum: How to get started in bioinformatics
students
updated 4 months ago by 44k • written 4 months ago by ▴ 10
2
votes
3
replies
827
views
Forum: Purely analytic or in silico manuscripts that have significantly improved biological understanding
dry-lab
updated 10 months ago by 142k • written 10 months ago by 4.2k
2
votes
3
replies
865
views
Forum: What are the major types of choices that affect an analysis?
reproducibility
updated 11 months ago by 44k • written 5.0 years ago by 22k
0
votes
3
replies
1.3k
views
Forum: Help cry of a M.Sc. student, who is seeking a path in Bioinformatics
PhD
updated 12 months ago by 44k • written 5.5 years ago by ▴ 50
0
votes
3
replies
1.9k
views
Forum: European Genome-phenome Archive (EGA) vs Gene Expression Omnibus (GEO)
GEO EGA
updated 12 months ago by 44k • written 5.2 years ago by ★ 9.4k
4
votes
3
replies
928
views
Forum: When to ask for rerun from vendors
ngs-vendor
updated 11 months ago by 44k • written 4.7 years ago by ★ 1.9k
1
vote
3
replies
964
views
Forum: A questionnaire regarding reproducibility and collaboration issues on bioinformatics
questionnaire reproducibility collaboration
updated 12 months ago by 44k • written 5.3 years ago by ▴ 140
2
votes
3
replies
464
views
Forum: My Project
Project CLI MD-Simulations Molecular-docking
3 months ago by Ajay A Shettigar • 0
4
votes
3
replies
1.3k
views
Forum: Computation-Intesive Application in the field of bioinformatics
Computation-Intensive Application Software
updated 12 months ago by 44k • written 5.8 years ago by • 0
316 results • Page 4 of 7
Recent Votes
Permanent Position as Researcher/Computational Biologist at the National Genomics Infrastructure (Sweden)
Permanent Position as Researcher/Computational Biologist at the National Genomics Infrastructure (Sweden)
Downloading NCBI Blast nt database
Comment: log2 fold change in RNA-seq analysis
Comment: log2 fold change in RNA-seq analysis
Answer: Ideal PC configurations and operating system for bioinformatics laboratory
correct way of analyzing cell proportions in singlecell data
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Popular Question to a.bibek52 ▴ 10
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Recent Replies
Answer: Mouse or Rat Gene Expression Data Similar to GTEx by jared.andrews07 ★ 17k
MGI has a [Gene Expression Database](https://www.informatics.jax.org/expression.shtml) that'll largely get you what you want.
Comment: Difference in Bismark output methylation call files and coverage files by Papyrus ★ 2.9k
Your files end in `CpG_report` so they are the "genome-wide cytosine report output". If you look at the [Bismark documentation][1] you will…
Answer: Error when looping over multiple columns in a data frame in R by Mohamed Samir ▴ 30
Dear Jeremy, Thanks. What I could not understand why you wrote it like : cutpoint_results[[col_name]] ? Is it because it is a list result…
Comment: BEAST2.5 Chloroplast Divergence Time using Fossil Records by Ram 44k
Do not use all caps - it's bad etiquette. I've fixed things for you this time.
Comment: minfi::getQC - badsamplecutoff 10.5 by Papyrus ★ 2.9k
I've recently also analyzed EPICv2 and have noticed that the log2 median intensities (and particularly the "uMed" channel), for an otherwis…
Comment: log2 fold change in RNA-seq analysis by May Ling • 0
Thank you so much for the confirmation Sir! Appreciate that. I think the paragraph was trying to say that: a fold change greater than **…
Comment: Difference in Bismark output methylation call files and coverage files by skdv2522 • 0
Chr1 192 + 0 0 CG CGA Chr1 193 - 0 0 CG CGA Chr1 197 + 0 0 CG CGT Chr1 198 - 0 0 CG CGG Chr1 218 + 0 0 CG CGA Chr1 …
Comment: Error with BiocParallel. No barcodes files found by Pierre Lindenbaum 162k
cross-posted: https://stackoverflow.com/questions/78522566/ > Do not post on multiple forums - that is just bad etiquette. What's worse, y…
Comment: log2 fold change in RNA-seq analysis by dsull ★ 6.1k
Your understanding is correct. That attached highlighted sentence is wrong.
Comment: minfi::getQC - is default badsamplecutoff of 10.5 always appropriate? ~half of s by June • 0
Hello, I just started working on analyzing methylation EPIC array data using minfi. Data is generated on EPICv2 array and I'm using up…
Comment: Classic threshold for log2 fold change in RNA-seq experiment by Ram 44k
Please do not add answers unless you're actually answering the top level question. Open your own question if the forum has not addressed it…
Comment: log2 fold change in RNA-seq analysis by May Ling • 0
Thank you for your prompt reply Sir! I think I finally understand the concept. Please correct me if I'm wrong: Let's say we are comparing …
Comment: log2 fold change in RNA-seq analysis by Hatchet ▴ 10
He means that the result of DEA will contain DEGs of A vs B. He gets LFC numbers in one column and positive LFC numbers will mean positive …
Comment: Z score by Akash D ▴ 50
I made this. Z scored on log2FC? will anyone support me on this? 3 groups A,B,C
Comment: log2 fold change in RNA-seq analysis by i.sudbery 19k
There is no such thing as a fold change of -2. Fold change is expression_in_condition_A/expresssion_in_condition_B as expression is a…
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