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9
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17
replies
3.0k
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Forum: “Systematic pattern of excess success"
paper statistics
updated 13 months ago by 43k • written 9.4 years ago by 3.5k
38
votes
17
replies
3.2k
views
7 follow
Forum: Why does bioinformatics use a special format like a BAM file instead of a database like SQLite?
sam bam samtools
updated 10 months ago by 43k • written 3.7 years ago by ▴ 250
20
votes
17
replies
3.8k
views
Forum: Biostar Ads Are Here! Showcase Your Accomplishments To The World!
biostars
updated 14 months ago by 43k • written 10.9 years ago by 100k
17
votes
17
replies
2.0k
views
6 follow
Forum: Journal for beginners
journal
updated 11 months ago by 43k • written 6.1 years ago by ▴ 20
15
votes
17
replies
3.3k
views
10 follow
Forum: What does a recruiter expect from a Bioinformatician ?
expectations recruitment skills
updated 22 months ago by 43k • written 6.2 years ago by ▴ 960
13
votes
17
replies
4.2k
views
6 follow
Forum: Advice for undergraduate bioinformatics learners
advice
updated 21 months ago by 43k • written 8.4 years ago by ▴ 10
27
votes
17
replies
5.1k
views
Forum: Data sharing via Bittorrent is coming to Biostar
biostars bittorrent
updated 14 months ago by 43k • written 9.8 years ago by 100k
21
votes
16
replies
3.2k
views
9 follow
Forum: Limit Upvotes Over A Certain Amount Of Hours
meta biostars
updated 14 months ago by 43k • written 11.3 years ago by ★ 3.6k
18
votes
16
replies
1.8k
views
Forum: Why are people not working on gene prioritization and candidate gene selection for new experiment design?
gene-prioritization
updated 11 months ago by 43k • written 5.6 years ago by ▴ 20
43
votes
16
replies
4.6k
views
10 follow
Forum: Need Advice On How To Become A Senior Bioinformatician
advice career
updated 14 months ago by 43k • written 11.0 years ago by ▴ 30
10
votes
16
replies
2.2k
views
Forum: Guide for posting better questions
meta
updated 13 months ago by 43k • written 7.7 years ago by 9.7k
24
votes
16
replies
2.3k
views
6 follow
Forum: #saveNCBI - it's a joke, right?
ncbi
updated 21 months ago by 43k • written 8.2 years ago by 11k
15
votes
16
replies
1.9k
views
Forum: Modernising the FASTQ Format
FASTA Efficiency FASTQ
updated 12 months ago by 43k • written 7.2 years ago by ▴ 520
14
votes
16
replies
4.9k
views
8 follow
Forum: Yet Another Programming Language
Rust Julia
updated 11 months ago by 43k • written 6.8 years ago by 9.7k
51
votes
16
replies
5.9k
views
11 follow
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2011?
papers
updated 15 months ago by 43k • written 12.4 years ago by ★ 2.9k
61
votes
16
replies
8.1k
views
14 follow
Forum: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
library
updated 16 months ago by ★ 1.3k • written 3.6 years ago by 8.5k
29
votes
16
replies
3.2k
views
Forum: Making bioinformatics help and tutorials open
ensembl
updated 14 months ago by 43k • written 9.7 years ago by 23k
6
votes
16
replies
7.1k
views
6 follow
Forum: Immune repertoire sequencing community
sequencing repseq immunology tcr ig
updated 2.2 years ago by 43k • written 9.7 years ago by 3.5k
20
votes
16
replies
3.4k
views
Forum: Blacklist of questionable genbank entries
genbank gi stealth-virus blacklist
updated 14 months ago by 43k • written 10.0 years ago by 54k
32
votes
16
replies
12k
views
9 follow
Forum: How to switch from bench research to computational biology?
career
updated 22 months ago by 43k • written 9.2 years ago by ▴ 70
30
votes
16
replies
2.2k
views
9 follow
Forum: Which programming langauge shall I start as a beginner in Bioinformatics
programming-language single-cell
updated 10 months ago by 43k • written 4.0 years ago by • 0
55
votes
16
replies
6.0k
views
8 follow
Forum: Mission Impossible: you have 1 minute to analyze the Ebola Genome
ebola mission-impossible
updated 19 months ago by 43k • written 9.5 years ago by 100k
54
votes
16
replies
5.7k
views
13 follow
Forum: The new era of bioinformatics: simple and fast tools, fewer and more informative data
kallisto computational-cost
updated 15 months ago by 43k • written 9.0 years ago by 100k
31
votes
16
replies
2.2k
views
8 follow
Forum: What is in your opinion the current state-of-the-art sequencing platform for genomic assembly (Nov 2019)
next-gen-sequencing assembly genome
updated 11 months ago by 43k • written 4.5 years ago by ★ 5.1k
37
votes
16
replies
4.0k
views
9 follow
Forum: Sanger sequencing is no longer the gold standard?
Sanger NGS
updated 11 months ago by 43k • written 6.5 years ago by ▴ 220
22
votes
16
replies
7.1k
views
9 follow
Forum: Large Tables In Supplementary Pdf In Journal Articles
publication
updated 14 months ago by 43k • written 10.9 years ago by ▴ 520
7
votes
15
replies
2.9k
views
Forum: Masters in Bioinformatics
ChIP-Seq genome next-gen R RNA-Seq
updated 2.1 years ago by 43k • written 9.4 years ago by • 0
19
votes
15
replies
2.0k
views
6 follow
Forum: Cross out line in Biostars
meta
updated 11 months ago by 43k • written 6.0 years ago by 5.3k
24
votes
15
replies
11k
views
11 follow
Forum: PhD in bioinformatics or biostatistics as a wet-lab scientist?
biology statistics PhD
updated 14 months ago by 43k • written 9.7 years ago by ▴ 70
23
votes
15
replies
3.7k
views
6 follow
Forum: Explaining purpose of using FastQC to a colleague
fastqc
updated 12 months ago by 43k • written 7.2 years ago by ▴ 810
21
votes
15
replies
2.1k
views
9 follow
Forum: Working abroad without a PhD
career
updated 11 months ago by 43k • written 4.6 years ago by ★ 1.4k
24
votes
15
replies
2.0k
views
Forum: Users of 0 rep required to read etiquette guides before first post?
meta
updated 13 months ago by 43k • written 8.2 years ago by 13k
22
votes
15
replies
8.9k
views
11 follow
Forum: RNASeq user experience with Novogene?
RNA-Seq
updated 11 months ago by 43k • written 5.8 years ago by ▴ 80
13
votes
15
replies
2.2k
views
Forum: Posting questions on Biostars without Googling or a preliminary Literature search
meta biostars
updated 12 months ago by 43k • written 7.5 years ago by ★ 1.5k
20
votes
15
replies
6.8k
views
Forum: How To Analyze Your Own Exome
exome filtering analysis vcf variant
updated 3.1 years ago by 43k • written 10.7 years ago by ▴ 130
28
votes
15
replies
2.3k
views
12 follow
Forum: Should bioinformaticians learn the scientific names of plants and animals?
sequence
updated 11 months ago by 43k • written 5.8 years ago by ▴ 10
28
votes
15
replies
4.5k
views
8 follow
Forum: Anyone Use R For Their Bioinformatics Work?
r
updated 14 months ago by 43k • written 10.5 years ago by ▴ 320
13
votes
15
replies
3.4k
views
8 follow
Forum: Biostar under spam attack - restrictions added to post content and title
meta biostars
updated 14 months ago by 43k • written 8.8 years ago by 100k
57
votes
15
replies
6.3k
views
9 follow
Forum: Good practices while dealing with very large datasets
Big-Data Programming
updated 11 months ago by 43k • written 7.0 years ago by ★ 1.2k
8
votes
15
replies
4.1k
views
Forum: Can Galaxy Be Used Under The Hood? How About The Galaxy Appliance?
galaxy
updated 14 months ago by 43k • written 10.8 years ago by 11k
42
votes
15
replies
7.8k
views
8 follow
Forum: Directions In Bioinformatics And Web-Based Data Visualization: Revisiting Javascript?
data-visualization python r
updated 14 months ago by 43k • written 11.5 years ago by 5.8k
57
votes
15
replies
4.8k
views
9 follow
Forum: Entice Biologists To Learn R
r
updated 14 months ago by 43k • written 12.6 years ago by 5.3k
23
votes
15
replies
2.5k
views
10 follow
Forum: I'm in a Masters of Bioinformatics Program and wanted to ask everyone for advice
career
updated 13 months ago by 43k • written 8.1 years ago by ▴ 20
6
votes
15
replies
1.7k
views
Forum: PhD Bioinformatics on GWAS
SNP GWAS genome PHD
updated 11 months ago by 43k • written 4.3 years ago by ▴ 50
16
votes
15
replies
6.3k
views
Forum: Would You Be Interested In Having A Usesthis Like Site For The Bioinformatics Community?
hardware software
updated 14 months ago by 43k • written 10.1 years ago by ▴ 920
12
votes
15
replies
2.3k
views
6 follow
Forum: Opinion: Bioinformatician - What comes first? Biology vs Informatics.
informatics biology knowledge
updated 12 months ago by 43k • written 7.2 years ago by ★ 2.7k
10
votes
15
replies
2.1k
views
Forum: How should reference genome fasta files be distributed by UCSC?
reference-genome fasta freeze ucsc-genome-browser
updated 11 months ago by 22k • written 14 months ago by ★ 1.6k
23
votes
15
replies
5.1k
views
6 follow
Forum: On the usage of Golang
assembly next-gen alignment
updated 11 months ago by 43k • written 5.6 years ago by ▴ 80
8
votes
15
replies
2.4k
views
7 follow
Forum: How to identify your analytic data is true?
RNA-Seq ChIP-Seq next-gen-sequencing
updated 11 months ago by 43k • written 6.7 years ago by ▴ 80
12
votes
14
replies
2.5k
views
8 follow
Forum: Recovering bam files after unknown deletion in the storage
photorec bam sequencing
written 4.9 years ago by ▴ 70
1,000 results • Page 4 of 20
Recent Votes
Answer: Searching for gene in multiple genomes
Comment: RNA velocity for smart-seq2 dataset
Answer: RNA velocity for smart-seq2 dataset
Answer: RNA velocity for smart-seq2 dataset
Comment: Help with choosing a model species for Augustus for a de novo assembled genome.
A: After read mapping, count exons or genes?
After read mapping, count exons or genes?
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Recent Awards • All
Popular Question to Thanujay S • 0
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Recent Replies
Comment: creating batch colum for batch correction by Expert ▴ 10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction by ATpoint 82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Pindel Segmentation Fault Error by Ruqaiya • 0
This the tool still problematic?
Comment: Segmentation error while using a tool by Ruqaiya • 0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool by Ruqaiya • 0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool by Mensur Dlakic ★ 27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool by Thanujay S • 0
Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why …
Comment: Extracting mutation status from MAF files - TCGA by Thanujay S • 0
Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool by Ruqaiya • 0
I tried the 2nd option only. I got the files of older version from the author but that version isn't working on my WSL, it's showing Segmen…
Comment: filtering before dada2 by GenoMax 142k
> I encountered a significant decrease in the percentage of merged reads. You can check with `bbmerge.sh` from BBMap suite to see how many…
Comment: HCL database download by GenoMax 142k
Isn't the download link available above the plot: http://bis.zju.edu.cn/HCL/data/DGE/Adult-Transverse-Colon1_dge.txt.gz
Comment: fastq screen aligner no specified. by GenoMax 142k
You need to change this configuration file to point it to the location where the aligner executable can be found. So as an example followi…
Answer: Design matrix Differential expression analysis by Gordon Smyth ★ 7.1k
The expression levels do not change but the way that you have parametrized the expression levels does change. The two design matrices give…
Comment: The GDC Legacy Archive is retiring soon. by lcordeiro ▴ 40
Hi Zhenyu, do you happen to know how I can download metadata for some of the legacy files? I downloaded several IDATs from the legacy data …
Answer: Force PLINK2 to neglect chrX as the sex chromosome by chrchang523 10k
(cross-posted from https://groups.google.com/g/plink2-users/c/Qphx_6BpPII ) You need to use --chr-set, not --allow-extra-chr, to specify…
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