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1,000 results • Page 4 of 20
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6
votes
7
replies
1.1k
views
Forum: Generic avatars, not gravatars?
technical avatar
2.1 years ago by Michael 54k
5
votes
0
replies
2.9k
views
Forum: Correct method of Merging/Integrating multiple single cell dataset using Seurat
seurat scrnaseq
2.1 years ago by rohitsatyam102 ▴ 850
0
votes
0
replies
537
views
Forum: Phylogenomics in the presence of gene flow
hybridisation introgression gene-flow Phylogenomics
2.1 years ago by jeronimocid93 • 0
2
votes
2
replies
999
views
Forum: Bioinformatician Jobs: Remote Flexible is possible?
remote-jobs bioinformatician
updated 22 months ago by 43k • written 2.1 years ago by ▴ 20
15
votes
11
replies
4.7k
views
9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA DAVID enrichment-analysis -geneontology
updated 11 months ago by 43k • written 2.1 years ago by ★ 1.9k
0
votes
0
replies
475
views
Forum: CIRCexplorer2 - Getting Count Matrix
CIRCexplorer2 counts circRNA
2.1 years ago by akamonto • 0
3
votes
5
replies
1.0k
views
Forum: 1000 genomes data?
DNA 1000genomes variation
updated 2.1 years ago by 43k • written 2.1 years ago by ▴ 520
0
votes
0
replies
526
views
Forum: What kind of analysis automation or pipeline is most needed in genomic data analysis right now?
dna genome analysis programming statistics
updated 2.1 years ago by 82k • written 2.1 years ago by • 0
29
votes
10
replies
6.5k
views
10 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz python visualisation
updated 13 months ago by 43k • written 6.1 years ago by 21k
3
votes
6
replies
2.2k
views
Forum: A Css For Small Screen Devices?
meta
updated 14 months ago by 43k • written 12.0 years ago by ★ 3.6k
12
votes
6
replies
2.8k
views
Forum: M.S. Bioinformatics and Computational Biology: Will I be able to find a job after graduation? I'm worried...
career Masters Graduation
updated 22 months ago by 43k • written 2.2 years ago by ▴ 20
0
votes
3
replies
927
views
Forum: Project Topics on bioinformatic
Data-analysis Coding Molecular-biology
updated 11 months ago by 43k • written 2.2 years ago by • 0
0
votes
4
replies
1.2k
views
Forum: Declining multithreading Diamond performance on decent dual AMD Epyc 7643 server
diamond performance EPYC 7643 multithreading AMD poor
updated 2.2 years ago by 141k • written 2.2 years ago by ▴ 10
3
votes
1
reply
914
views
Forum: How to download multiple .gz files from Ensembl Protists database
wget protist ensembl
updated 10 weeks ago by ★ 1.7k • written 2.2 years ago by ▴ 850
3
votes
4
replies
2.5k
views
Forum: Bioinformatics Research Topics/Areas that Everyone should take a look / Current Trends
research-area postgraduates
updated 14 months ago by 43k • written 2.2 years ago by ▴ 10
1
vote
0
replies
555
views
Forum: Continue exploring Bioinformatics and improving Bioinformatics Skills
postgraduate bioinformatics-skills
updated 14 months ago by 43k • written 2.2 years ago by ▴ 10
0
votes
1
reply
765
views
Forum: ensemble VEP server is down
VEP ensemble
updated 2.2 years ago by 82k • written 2.2 years ago by • 0
15
votes
10
replies
2.0k
views
7 follow
Forum: Tips and tricks to improve data visualization in bioinformatics
visualization ggplot2 plot
updated 2.2 years ago by ★ 27k • written 2.2 years ago by ★ 2.9k
3
votes
8
replies
1.6k
views
Forum: What are the pain points of using Genomics on the cloud today?
datasharing pipelines workspaces cloud genomics
updated 2.2 years ago by 22k • written 2.2 years ago by ▴ 520
0
votes
0
replies
554
views
Forum: UniProt survey about programmatic access
documentation api survey uniprot
updated 2.3 years ago by 161k • written 2.3 years ago by ★ 2.4k
4
votes
9
replies
3.0k
views
Forum: 100% variance explained on one PC in DESeq2 PCA?
RNA-Seq DESeq2
2.3 years ago by melatoninixo ▴ 10
17
votes
14
replies
3.3k
views
Forum: Asking for feedback on a Python library for computing alignments
alignment Python
updated 10 months ago by ▴ 220 • written 2.3 years ago by ▴ 60
0
votes
1
reply
638
views
Forum: Statistical methods Books Recommendation
Books Recommendation
updated 2.3 years ago by 82k • written 2.3 years ago by ▴ 110
0
votes
0
replies
470
views
Forum: Is there any limitation for number of samples in AUC analysis ?
curves ROC
2.3 years ago by sabaghianamir70 ▴ 70
6
votes
5
replies
4.0k
views
6 follow
Forum: How is the job outlook in 2020 ?
career outlook
updated 22 months ago by 43k • written 5.9 years ago by • 0
6
votes
5
replies
1.2k
views
6 follow
Forum: Usability of depiction of individual reads in genome browser visualization
visualization browser genome
updated 2.3 years ago by 100k • written 2.3 years ago by ▴ 600
4
votes
7
replies
1.8k
views
Forum: Data Base management system for data lake: Cassandra vs MongoDB vs Apache HBase
HBase Cassandra MongoDB Data-Lake
updated 2.3 years ago by ★ 3.2k • written 2.3 years ago by ▴ 120
9
votes
8
replies
5.2k
views
9 follow
Forum: insert figure and code in the post of Biostars?
meta biostars
updated 13 months ago by 43k • written 8.9 years ago by ★ 2.2k
7
votes
2
replies
1.6k
views
Forum: What are the most influential Bioinformatics/Computational Biology papers/methods/discoveries of 2021?
snp papers survey
updated 14 months ago by 43k • written 2.3 years ago by ★ 1.4k
0
votes
1
reply
770
views
Forum: What are the most important papers/methods in Genomics/Bioinformatics of 2021?
publications
updated 10 months ago by 43k • written 2.3 years ago by ★ 2.5k
24
votes
11
replies
4.2k
views
7 follow
Forum: In 2022 is Perl and Ruby programming languages still useful for bioinformatics?
ruby perl
updated 2.4 years ago by 8.5k • written 2.4 years ago by • 0
0
votes
4
replies
860
views
Forum: Terms (like atlas, map, and archive) on database description
database
2.4 years ago by bioinformaticsBoy ▴ 10
2
votes
2
replies
794
views
Forum: How much are companies willing to pay for microbiome data?
NGS metagenomics microbiome
2.4 years ago by maa4618 • 0
19
votes
1
reply
4.5k
views
Forum: Best programming language for bioinformatics - R Language
programming R
updated 13 months ago by 82k • written 3.2 years ago by ▴ 420
6
votes
7
replies
1.4k
views
Forum: How to change my email address
meta biostars
updated 2.4 years ago by • 0 • written 3.2 years ago by ▴ 50
9
votes
11
replies
3.4k
views
6 follow
Forum: 2021: state and usage of compressed file standards better than BAM and FASTQ
bam compression fastq
updated 21 months ago by ▴ 120 • written 3.0 years ago by ★ 5.3k
10
votes
3
replies
4.6k
views
Forum: Trimming tools - your experience please?
trimming
updated 2.4 years ago by 19k • written 2.4 years ago by ▴ 20
8
votes
9
replies
1.8k
views
Forum: Most useful public genomic/genetic databases/tools/applications
public-data genomics Genetics open-access
updated 14 months ago by 43k • written 2.4 years ago by ▴ 520
74
votes
14
replies
30k
views
12 follow
Forum: Bioinformatics Consulting Thoughts
consulting
updated 22 months ago by 43k • written 13.9 years ago by 4.5k
6
votes
3
replies
1.2k
views
Forum: Computational Biology Conference
biology computational science research conference
updated 2.4 years ago by 47k • written 2.4 years ago by ▴ 790
0
votes
1
reply
730
views
Forum: UK supercomputer Cambridge-1 vs SDSC vs TACC
SDSC TACC HPC Cambridge-1
updated 2.4 years ago by 141k • written 2.4 years ago by ★ 9.4k
0
votes
1
reply
716
views
Forum: Official/centralized/designated genetic/biological knowledge graph?
knowledge graph
updated 2.5 years ago by 8.7k • written 2.5 years ago by • 0
0
votes
0
replies
540
views
Forum: Targeted sequencing and phylogenetics
SC sequencing exome gene_panel
updated 14 months ago by 43k • written 2.5 years ago by • 0
2
votes
7
replies
3.1k
views
Forum: M1 Pro/Max and future
Max M1 M2 Pro Mac
updated 2.5 years ago by 141k • written 2.5 years ago by ▴ 20
21
votes
8
replies
7.4k
views
Forum: Is there ever a good reason to use a log transformation instead of Box-Cox?
data skew transformation power
updated 2.5 years ago by 100k • written 2.5 years ago by ★ 27k
6
votes
2
replies
783
views
Forum: Biology undergraduate looking for mentor
computational-biology Biology mentor Toronto
updated 2.5 years ago by 43k • written 2.5 years ago by • 0
1
vote
7
replies
1.4k
views
Forum: Does it matter where I get my PhD? I am currently a masters student.
advice PhD Masters
2.5 years ago by nickroseae ▴ 10
16
votes
7
replies
2.0k
views
Forum: Will a user #100000 get Tesla Model 3?
milestone
updated 2.5 years ago by 100k • written 2.5 years ago by ★ 27k
2
votes
8
replies
1.9k
views
Forum: Non biology & computer professional interested in bioinformatics
computer-science machine-learning
updated 14 months ago by 43k • written 2.5 years ago by • 0
0
votes
0
replies
640
views
Forum: PhD Bioinformatics Remote positions
PhD
updated 22 months ago by 43k • written 2.5 years ago by ▴ 30
1,000 results • Page 4 of 20
Recent Votes
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
How do I find out the read lenght of a fastq file?
Calculate Allele balance by sample
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
Answer: Is there a tool that sorts gtf files?
Answer: gvcf joint calling
Answer: Heatmap and rna-seq
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Popular Question to rohitsatyam102 ▴ 850
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Popular Question to BioinfGuru ★ 1.7k
Recent Replies
Comment: gvcf joint calling by Jeremy Leipzig 22k
can you show us an exonic position in your VCF file that is all `./.`?
Comment: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC: by O.rka ▴ 710
Thank you. This answers my question. The reason I am asking is because I’m trying to do set enrichment analysis with BRENDA pathways using…
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i by colindaven 6.4k
I used to use nextflow in a conda env. That requires the env to be active when a pipeline is started. Also I have productive pipelines whic…
Comment: different FeatureCounts output for the same data by Istvan Albert 100k
just to clarify, it is not that the program algorithm works differently but the meaning of the flags changed; before -p was sufficient to…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix by BioinfGuru ★ 1.7k
Thanks Ram. Using merge maxed out my ram on a large list, but your suggestion directed me to purrr::reduce which works great.
Comment: ScRNA data question by starswillfade ▴ 10
features <- SelectIntegrationFeatures(object.list = merged_dat) data.anchors <- FindIntegrationAnchors(object.list = merged_dat, …
Comment: gvcf joint calling by zihanss • 0
Thank you for your help! I really appreciate it! And you know, the merged WES gVCF files still have "NA" loci. For such cases, I am quite …
Comment: Correct way to compare multiple treaments between RNA-Seq samples using edgeR? by Guille • 0
Thank you for your answer! The MDS plot seems to group most treatment groups close-by, so I'm starting to suspect the effect of treatment …
Answer: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC: by Mensur Dlakic ★ 27k
They say that we remember better things we figured out on our own, rather than things we were taught. You were literally two clicks away fr…
Comment: Heatmap and rna-seq by dsull ★ 5.8k
https://maayanlab.cloud/clustergrammer/ It's a web-based tool (can also be a python jupyter widget) that I find useful for exploring a pat…
Answer: Limma Analysis Agilent Microarray Data (GPL1708) by Gordon Smyth ★ 7.0k
There is an Agilent array case study in the limma User's Guide, which you might find helpful and somewhat simpler. I don't recommend col…
Answer: Correct way to compare multiple treaments between RNA-Seq samples using edgeR? by Gordon Smyth ★ 7.0k
The comparison you've done seems exactly right to test whether treatment 2 modifies or enhances the effect of treatment 1. Have you exam…
Answer: How to use limma to find differentially expressed genes in response to a continu by Gordon Smyth ★ 7.0k
There's no need for form a contrast because the score variable is already in the model. A continuous variable is its own contrast. Just run…
Comment: Create a new bed file with all pairwise combinations between two other bed files by J ▴ 10
Oh wow, bedops closest-features, how did I overlook that!! I didn't know about it; thank you! Your awk script is beautiful. This worked per…
Comment: Create a new bed file with all pairwise combinations between two other bed files by J ▴ 10
Thank you Pierre! I'll try this out with my full data set.
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