Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this year
all time
today
this week
this month
this year
1,000 results • Page
6 of 20
Sort: Views
Rank
Views
Votes
Replies
81
votes
26
replies
13k
views
17 follow
Appropriate Podcasts For A Bioinformatician?
subjective
updated 6 months ago by
Ram
43k • written 14.2 years ago by
User 59
13k
24
votes
9
replies
13k
views
9 follow
.mcool to .hic
RNA-Seq
updated 8 months ago by
Ben B
▴ 50 • written 5.3 years ago by
dimitrischat
▴ 210
10
votes
8
replies
13k
views
9 follow
Ribosomal Intervals For Collectrnaseqmetrics
rna-seq
qc
picard
updated 9 months ago by
Ram
43k • written 11.2 years ago by
Johan
▴ 890
10
votes
8
replies
13k
views
8 follow
How to install gdc-client in Ubnutu
ubuntu
gdc-client
updated 8 months ago by
Ram
43k • written 7.8 years ago by
pxf109
▴ 20
21
votes
9
replies
13k
views
8 follow
List all available databases for ANNOVAR
annovar
updated 8 months ago by
yuanma0427
• 0 • written 7.9 years ago by
QVINTVS_FABIVS_MAXIMVS
★ 2.5k
31
votes
8
replies
13k
views
Experiences With Clc Genomics Workbench (Or Other Commercial Tools) For Next-Gen Sequencing
next-gen-sequencing
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Istvan Albert
100k
6
votes
5
replies
13k
views
Forum:
Single-end sequencing versus paired-end
Assembly
snp
sequencing
updated 11 months ago by
Ram
43k • written 4.3 years ago by
Sujata
▴ 20
17
votes
8
replies
13k
views
9 follow
MAF vs VAF
sequencing
updated 6 weeks ago by
AshleeThomson
▴ 80 • written 6.2 years ago by
lauren.wahyudi
▴ 50
7
votes
10
replies
13k
views
6 follow
Convert BED(UCSC) to VCF
Assembly
updated 11 months ago by
guntul
• 0 • written 8.9 years ago by
Ishtiaq Ahmad Khan
▴ 70
6
votes
4
replies
13k
views
Trimmomatic: What is the difference between paired and unpaired output files in paired-end mode
trimmomatic
paired-end
updated 5 days ago by
Ruqaiya
• 0 • written 6.5 years ago by
dllopezr
▴ 130
76
votes
14
replies
13k
views
10 follow
Tool:
karyoploteR: uncircle your genomes
karyoploteR
Rdataviz
NGS
updated 11 months ago by
Ram
43k • written 6.9 years ago by
bernatgel
★ 3.4k
10
votes
37
replies
13k
views
21 follow
Convert Gene IDs of Tomato Sol Database
tomato
gene
updated 5 weeks ago by
aziz.hammou
• 0 • written 8.9 years ago by
kevluv93
▴ 170
13
votes
8
replies
13k
views
7 follow
Building Dict File for GATK
java
gatk
updated 11 months ago by
DareDevil
★ 4.3k • written 4.3 years ago by
dec986
▴ 380
8
votes
11
replies
12k
views
11 follow
How I do lift over a Plink bim file from Hg18 to Hg19.
plink
SNP
updated 10 months ago by
jxcao9812
▴ 10 • written 7.0 years ago by
devenvyas
▴ 740
56
votes
12
replies
12k
views
9 follow
What Are The Public Sql Servers For Bioinformatics ?
online-server
sql
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Pierre Lindenbaum
161k
16
votes
5
replies
12k
views
Where Can I Find The Basepair Positions Of Chromosome Bands?
chromosome
position
updated 5 months ago by
Malachi Griffith
20k • written 13.7 years ago by
Abdel
▴ 410
35
votes
15
replies
12k
views
10 follow
How to select an aligner?
RNA-Seq
next-gen
alignment
updated 4 months ago by
Erfan
• 0 • written 6.0 years ago by
marongiu.luigi
▴ 710
12
votes
3
replies
12k
views
words: time course VS time series
time-course
time-series
updated 11 months ago by
Ram
43k • written 8.7 years ago by
pengchy
▴ 450
12
votes
6
replies
12k
views
7 follow
Is there a list of mouse housekeeping genes available to download?
RNA-Seq
genome
gene
next-gen-sequencing
updated 4 months ago by
Zongxu Zhang
• 0 • written 8.8 years ago by
Marigold77
▴ 40
13
votes
11
replies
12k
views
how to find sample type information from TCGA?
RNA-Seq
TCGA
updated 3 months ago by
Ram
43k • written 7.8 years ago by
aichen
▴ 100
7
votes
9
replies
12k
views
problems in hg19 and b37 compatibility
b37
annotation
hg19
updated 9 months ago by
Manuel Sokolov Ravasqueira
▴ 100 • written 10.0 years ago by
Nicola Casiraghi
▴ 500
0
votes
3
replies
12k
views
Converting PDBQT output to PDB in VINA
Docking
PDBQT
VINA
updated 10 weeks ago by
Ricard
• 0 • written 8.4 years ago by
marawanhussain
▴ 30
42
votes
15
replies
12k
views
12 follow
Preferred Tools For Making Analysis Pipeline Flowchart ?
pipeline
updated 10 months ago by
Ram
43k • written 11.2 years ago by
VS
▴ 730
11
votes
6
replies
12k
views
6 follow
Association Analysis with Plink error
SNP
plink
plink2
association
updated 6 months ago by
rms2jg
• 0 • written 8.1 years ago by
mmukhame321
▴ 60
23
votes
18
replies
12k
views
7 follow
Fasta header trimming
sequence
updated 8 months ago by
Ankit
• 0 • written 7.3 years ago by
leo1985.arnab
▴ 50
5
votes
22
replies
12k
views
sra toolkit program fastq-dump question.
sratoolkit
fastq-dump
updated 10 months ago by
Ram
43k • written 9.3 years ago by
jinhwa1112
▴ 10
31
votes
14
replies
12k
views
11 follow
Finding Rrna Genes In Metagenomic Data
rna
rRNA
metagenomics
updated 7 weeks ago by
Ram
43k • written 13.6 years ago by
toshnam
▴ 650
23
votes
10
replies
12k
views
Tool:
ggtree: phylogenetic tree visualization and annotation
ggtree
phylogeny
visualization
updated 10 months ago by
Ram
43k • written 7.9 years ago by
Guangchuang Yu
★ 2.6k
7
votes
8
replies
12k
views
7 follow
Makeblastdb Error In Blast+ 2.2.26
blast
updated 5 months ago by
SequenceServer
▴ 140 • written 11.9 years ago by
ranlib
▴ 40
13
votes
6
replies
12k
views
How to add rsIDs to VCF?
SNP
updated 9 months ago by
nanodano
▴ 30 • written 4.8 years ago by
markgodek
▴ 50
15
votes
9
replies
12k
views
8 follow
Downsample BAM file to specific amount of reads
bam
updated 8 weeks ago by
GenoMax
142k • written 2.7 years ago by
kstangline
▴ 80
7
votes
5
replies
12k
views
QC of Oxford Nanopore fastq files with NanoPlot
Oxford-Nanopore
long-reads
updated 11 months ago by
Ram
43k • written 5.0 years ago by
s.m.frampton
▴ 20
22
votes
16
replies
12k
views
6 follow
List All The Tools Or Write A Script To Validate That A Sequence Only Contains Letters From A Given Alphabet
dna
sequence
updated 7 months ago by
Ram
43k • written 14.2 years ago by
Biostar User
★ 1.0k
3
votes
16
replies
12k
views
combining z-scores into a single z-score value
excel
R
statistics
updated 11 months ago by
Ram
43k • written 5.2 years ago by
Star
▴ 60
21
votes
7
replies
12k
views
Forum:
Bioinformatics short paper journal resource [software/webapps/database]
journal
software
webapp
updated 7 months ago by
Gennady Khvorykh
▴ 100 • written 8.1 years ago by
Sukhi Singh
11k
20
votes
10
replies
12k
views
Looking For A Command Line Version Of Ncbi Taxonomy 'Stratification' Tool
taxonomy
blast
pipeline
ncbi
updated 10 months ago by
Ram
43k • written 12.3 years ago by
Daniel
★ 4.0k
3
votes
6
replies
11k
views
Retrieving data from NCBI GEO and RNA-Seq Data Analysis
RNA-Seq
R
GEO
Normalization
Count
updated 7 months ago by
Karma
▴ 310 • written 6.7 years ago by
hkarakurt
▴ 180
11
votes
7
replies
11k
views
Tutorial:
ClusterProfiler A software for functional enrichment of differentially expressed genes- A tutorial
clusterProfiler
Software
rna-seq
updated 12 months ago by
Ram
43k • written 3.2 years ago by
Novogene
▴ 420
50
votes
30
replies
11k
views
13 follow
Tutorial:
How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
documentation
meta
how-to
updated 7 weeks ago by
Istvan Albert
100k • written 8.2 years ago by
Ram
43k
58
votes
30
replies
11k
views
13 follow
Content Management Systems For Bioinformatics Websites
web
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Khader Shameer
18k
13
votes
25
replies
11k
views
9 follow
Tool:
Mitcr: A Software Tool For Analyzing T-Cell Receptor Sequencing Data
analysis
sequencing
ngs
updated 10 months ago by
Ram
43k • written 10.8 years ago by
mikhail.shugay
3.5k
21
votes
11
replies
11k
views
Tool:
Segemehl: A Fast One-Stop-Shop Mapping Tool
mapping
next-gen
updated 10 months ago by
Ram
43k • written 11.6 years ago by
David Langenberger
11k
80
votes
24
replies
11k
views
18 follow
Which Bioinformatics Journals Do You Follow?
bioinformatics-journal
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Giovanni M Dall'Olio
28k
12
votes
16
replies
11k
views
8 follow
fpkm to tpm conversion
R
next-gen
updated 3 months ago by
DareDevil
★ 4.3k • written 6.7 years ago by
sayamsmruti
▴ 20
9
votes
14
replies
11k
views
how to extract the genomic positions and chromosome number for a list of genes
genome
Ensembl
Biomart
updated 11 months ago by
Ram
43k • written 5.2 years ago by
Star
▴ 60
5
votes
3
replies
11k
views
How can I control the cluster number in scRNASeq clustering by Seurat package
Seurat
RNA-Seq
single-cell
updated 5 months ago by
Ram
43k • written 5.4 years ago by
wenchuan.xie
▴ 40
17
votes
11
replies
11k
views
6 follow
Tool:
Pyfaidx: Efficient, "Pythonic" Random Access To Fasta Files Using Samtools-Compatible Indexing
fasta
python
samtools
updated 10 months ago by
Ram
43k • written 10.2 years ago by
Matt Shirley
10k
122
votes
44
replies
11k
views
24 follow
News:
Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta
biostars
updated 6 months ago by
Ram
43k • written 11.5 years ago by
Istvan Albert
100k
7
votes
6
replies
11k
views
7 follow
Blastn Segmentation Fault
blast
updated 8 months ago by
Amirhossein Hajianpour
▴ 40 • written 12.4 years ago by
Srihari
▴ 30
25
votes
8
replies
11k
views
6 follow
Tools For Chipseq Scale Motif Finding?
motif
motif
chip-seq
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Cassj
★ 1.3k
1,000 results • Page
6 of 20
Recent Votes
Answer: --normalizeUsing RPGC
Answer: Details on salmon index
Answer: Details on salmon index
Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
A: How count reads
Recent Locations •
All
United States,
just now
Bologna,
1 minute ago
Argentina,
1 minute ago
United States,
2 minutes ago
France,
2 minutes ago
Berlin,
3 minutes ago
United States,
4 minutes ago
Recent Awards •
All
Popular Question
to
carlopecoraro2
★ 2.5k
Scholar
to
GenoMax
142k
Popular Question
to
ben@f
▴ 20
Popular Question
to
Jalil Sharif
▴ 80
Popular Question
to
biology_inform
▴ 50
Scholar
to
nd48
▴ 20
Teacher
to
aw7
▴ 300
Recent Replies
Comment: About runing Pilon on individual chromosomes when polish draft genome assembly
by
sansan_96
▴ 90
Hello, What approach could you recommend for a large genome (3Gb) with about 10k scaffolds? I'm having problems with RAM when processing t…
Comment: Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
by
e.r.zakiev
▴ 210
Very good question and analysis. I personally only tried SoupX so can't weigh in on the comparison. This might be not really the issue here…
Comment: Is there any way to modify this pie chart ?
by
marco.barr
▴ 120
Try following the same logic as the guide which adds the labels about halfway through each pie slice value. Check column's name in script b…
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
sorry for that, this is first time i use it.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
thank sir, i will check it again
Comment: In one PCA plot, can I calculate the percentage of different factors that contri
by
diqixiaoyaoer
▴ 10
Ok, I will response to you here as soon as possible.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
GenoMax
142k
How much memory do you have available? For `nt` database you are going to need 30-40G minimum. You may simply be running out of memory.
Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
by
ev97
▴ 20
Noted! Thanks very much for your help!
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
i'm using linux. I was use 3 file.fasta to debug and it is nucleotide file, and my blast -h still work > (/data/quyho/tools/mgs2amr_tool…
Answer: Details on salmon index
by
Rob
6.5k
Hi Lorenzo, Thanks for your question. First, I'd like to clarify that several substantial updates have been made to salmon since its …
Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
by
yura.grabovska
▴ 90
sc/snRNASeq tends to have differences in things like mitochondrial genes etc, which you can account for using tools like SCTransform but in…
Comment: Why does assigning genes with biomart give me different values than using a tran
by
bioinfo
▴ 150
Thank you! I ended up using the transcripts_to_genes instead of biomart.
Comment: How can I calculate the OS of each patient?
by
ATpoint
82k
Please be specific. Which TCGA subset, what did you try? Show code.
Answer: mitochondrial genome assembly pipeline
by
shelkmike
★ 1.2k
A good tool for mitochondrial genome assembly is GetOrganelle (https://github.com/Kinggerm/GetOrganelle)
Comment: getting exon coordinates
by
Ram
43k
Please do not use `bioinformatics` as a tag unless your post in about the field of bioinformatics itself.
Traffic: 2510 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6