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1,000 results • Page
6 of 20
Sort: Views
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Views
Votes
Replies
6
votes
9
replies
13k
views
extract small heatmap from big one deeptools
deeptools
ChIP-Seq
updated 11 months ago by
Ram
43k • written 7.3 years ago by
biostarsb
▴ 30
7
votes
13
replies
13k
views
Tutorial:
Merging multiple vcf files into Single vcf file
vcf
bcftools
updated 11 months ago by
Ram
43k • written 5.2 years ago by
jaybee
▴ 170
81
votes
26
replies
13k
views
17 follow
Appropriate Podcasts For A Bioinformatician?
subjective
updated 6 months ago by
Ram
43k • written 14.2 years ago by
User 59
13k
24
votes
9
replies
13k
views
9 follow
.mcool to .hic
RNA-Seq
updated 8 months ago by
Ben B
▴ 50 • written 5.3 years ago by
dimitrischat
▴ 210
10
votes
8
replies
13k
views
9 follow
Ribosomal Intervals For Collectrnaseqmetrics
rna-seq
qc
picard
updated 9 months ago by
Ram
43k • written 11.2 years ago by
Johan
▴ 890
10
votes
8
replies
13k
views
8 follow
How to install gdc-client in Ubnutu
ubuntu
gdc-client
updated 8 months ago by
Ram
43k • written 7.8 years ago by
pxf109
▴ 20
21
votes
9
replies
13k
views
8 follow
List all available databases for ANNOVAR
annovar
updated 8 months ago by
yuanma0427
• 0 • written 7.9 years ago by
QVINTVS_FABIVS_MAXIMVS
★ 2.5k
31
votes
8
replies
13k
views
Experiences With Clc Genomics Workbench (Or Other Commercial Tools) For Next-Gen Sequencing
next-gen-sequencing
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Istvan Albert
100k
6
votes
5
replies
13k
views
Forum:
Single-end sequencing versus paired-end
Assembly
snp
sequencing
updated 11 months ago by
Ram
43k • written 4.3 years ago by
Sujata
▴ 20
17
votes
8
replies
13k
views
9 follow
MAF vs VAF
sequencing
updated 6 weeks ago by
AshleeThomson
▴ 80 • written 6.2 years ago by
lauren.wahyudi
▴ 50
7
votes
10
replies
13k
views
6 follow
Convert BED(UCSC) to VCF
Assembly
updated 11 months ago by
guntul
• 0 • written 8.9 years ago by
Ishtiaq Ahmad Khan
▴ 70
6
votes
4
replies
13k
views
Trimmomatic: What is the difference between paired and unpaired output files in paired-end mode
trimmomatic
paired-end
updated 5 days ago by
Ruqaiya
• 0 • written 6.5 years ago by
dllopezr
▴ 130
76
votes
14
replies
13k
views
10 follow
Tool:
karyoploteR: uncircle your genomes
karyoploteR
Rdataviz
NGS
updated 11 months ago by
Ram
43k • written 6.9 years ago by
bernatgel
★ 3.4k
10
votes
37
replies
13k
views
21 follow
Convert Gene IDs of Tomato Sol Database
tomato
gene
updated 5 weeks ago by
aziz.hammou
• 0 • written 8.9 years ago by
kevluv93
▴ 170
13
votes
8
replies
13k
views
7 follow
Building Dict File for GATK
java
gatk
updated 11 months ago by
DareDevil
★ 4.3k • written 4.3 years ago by
dec986
▴ 380
8
votes
11
replies
12k
views
11 follow
How I do lift over a Plink bim file from Hg18 to Hg19.
plink
SNP
updated 10 months ago by
jxcao9812
▴ 10 • written 7.0 years ago by
devenvyas
▴ 740
56
votes
12
replies
12k
views
9 follow
What Are The Public Sql Servers For Bioinformatics ?
online-server
sql
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Pierre Lindenbaum
161k
16
votes
5
replies
12k
views
Where Can I Find The Basepair Positions Of Chromosome Bands?
chromosome
position
updated 5 months ago by
Malachi Griffith
20k • written 13.7 years ago by
Abdel
▴ 410
35
votes
15
replies
12k
views
10 follow
How to select an aligner?
RNA-Seq
next-gen
alignment
updated 4 months ago by
Erfan
• 0 • written 6.0 years ago by
marongiu.luigi
▴ 710
12
votes
3
replies
12k
views
words: time course VS time series
time-course
time-series
updated 11 months ago by
Ram
43k • written 8.7 years ago by
pengchy
▴ 450
12
votes
6
replies
12k
views
7 follow
Is there a list of mouse housekeeping genes available to download?
RNA-Seq
genome
gene
next-gen-sequencing
updated 4 months ago by
Zongxu Zhang
• 0 • written 8.8 years ago by
Marigold77
▴ 40
13
votes
11
replies
12k
views
how to find sample type information from TCGA?
RNA-Seq
TCGA
updated 3 months ago by
Ram
43k • written 7.8 years ago by
aichen
▴ 100
7
votes
9
replies
12k
views
problems in hg19 and b37 compatibility
b37
annotation
hg19
updated 9 months ago by
Manuel Sokolov Ravasqueira
▴ 100 • written 10.0 years ago by
Nicola Casiraghi
▴ 500
0
votes
3
replies
12k
views
Converting PDBQT output to PDB in VINA
Docking
PDBQT
VINA
updated 9 weeks ago by
Ricard
• 0 • written 8.4 years ago by
marawanhussain
▴ 30
42
votes
15
replies
12k
views
12 follow
Preferred Tools For Making Analysis Pipeline Flowchart ?
pipeline
updated 10 months ago by
Ram
43k • written 11.2 years ago by
VS
▴ 730
11
votes
6
replies
12k
views
6 follow
Association Analysis with Plink error
SNP
plink
plink2
association
updated 6 months ago by
rms2jg
• 0 • written 8.1 years ago by
mmukhame321
▴ 60
23
votes
18
replies
12k
views
7 follow
Fasta header trimming
sequence
updated 8 months ago by
Ankit
• 0 • written 7.3 years ago by
leo1985.arnab
▴ 50
5
votes
22
replies
12k
views
sra toolkit program fastq-dump question.
sratoolkit
fastq-dump
updated 10 months ago by
Ram
43k • written 9.3 years ago by
jinhwa1112
▴ 10
31
votes
14
replies
12k
views
11 follow
Finding Rrna Genes In Metagenomic Data
rna
rRNA
metagenomics
updated 7 weeks ago by
Ram
43k • written 13.6 years ago by
toshnam
▴ 650
23
votes
10
replies
12k
views
Tool:
ggtree: phylogenetic tree visualization and annotation
ggtree
phylogeny
visualization
updated 10 months ago by
Ram
43k • written 7.9 years ago by
Guangchuang Yu
★ 2.6k
13
votes
6
replies
12k
views
How to add rsIDs to VCF?
SNP
updated 9 months ago by
nanodano
▴ 30 • written 4.8 years ago by
markgodek
▴ 50
7
votes
8
replies
12k
views
7 follow
Makeblastdb Error In Blast+ 2.2.26
blast
updated 5 months ago by
SequenceServer
▴ 140 • written 11.9 years ago by
ranlib
▴ 40
15
votes
9
replies
12k
views
8 follow
Downsample BAM file to specific amount of reads
bam
updated 8 weeks ago by
GenoMax
142k • written 2.7 years ago by
kstangline
▴ 80
22
votes
16
replies
12k
views
6 follow
List All The Tools Or Write A Script To Validate That A Sequence Only Contains Letters From A Given Alphabet
dna
sequence
updated 7 months ago by
Ram
43k • written 14.2 years ago by
Biostar User
★ 1.0k
7
votes
5
replies
12k
views
QC of Oxford Nanopore fastq files with NanoPlot
Oxford-Nanopore
long-reads
updated 11 months ago by
Ram
43k • written 5.0 years ago by
s.m.frampton
▴ 20
3
votes
16
replies
12k
views
combining z-scores into a single z-score value
excel
R
statistics
updated 11 months ago by
Ram
43k • written 5.2 years ago by
Star
▴ 60
21
votes
7
replies
12k
views
Forum:
Bioinformatics short paper journal resource [software/webapps/database]
journal
software
webapp
updated 7 months ago by
Gennady Khvorykh
▴ 100 • written 8.1 years ago by
Sukhi Singh
11k
20
votes
10
replies
12k
views
Looking For A Command Line Version Of Ncbi Taxonomy 'Stratification' Tool
taxonomy
blast
pipeline
ncbi
updated 10 months ago by
Ram
43k • written 12.3 years ago by
Daniel
★ 4.0k
3
votes
6
replies
11k
views
Retrieving data from NCBI GEO and RNA-Seq Data Analysis
RNA-Seq
R
GEO
Normalization
Count
updated 7 months ago by
Karma
▴ 310 • written 6.7 years ago by
hkarakurt
▴ 180
11
votes
7
replies
11k
views
Tutorial:
ClusterProfiler A software for functional enrichment of differentially expressed genes- A tutorial
clusterProfiler
Software
rna-seq
updated 12 months ago by
Ram
43k • written 3.2 years ago by
Novogene
▴ 420
50
votes
30
replies
11k
views
13 follow
Tutorial:
How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
documentation
meta
how-to
updated 6 weeks ago by
Istvan Albert
100k • written 8.2 years ago by
Ram
43k
58
votes
30
replies
11k
views
13 follow
Content Management Systems For Bioinformatics Websites
web
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Khader Shameer
18k
13
votes
25
replies
11k
views
9 follow
Tool:
Mitcr: A Software Tool For Analyzing T-Cell Receptor Sequencing Data
analysis
sequencing
ngs
updated 10 months ago by
Ram
43k • written 10.8 years ago by
mikhail.shugay
3.5k
21
votes
11
replies
11k
views
Tool:
Segemehl: A Fast One-Stop-Shop Mapping Tool
mapping
next-gen
updated 10 months ago by
Ram
43k • written 11.6 years ago by
David Langenberger
11k
80
votes
24
replies
11k
views
18 follow
Which Bioinformatics Journals Do You Follow?
bioinformatics-journal
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Giovanni M Dall'Olio
28k
12
votes
16
replies
11k
views
8 follow
fpkm to tpm conversion
R
next-gen
updated 3 months ago by
DareDevil
★ 4.3k • written 6.7 years ago by
sayamsmruti
▴ 20
9
votes
14
replies
11k
views
how to extract the genomic positions and chromosome number for a list of genes
genome
Ensembl
Biomart
updated 11 months ago by
Ram
43k • written 5.2 years ago by
Star
▴ 60
5
votes
3
replies
11k
views
How can I control the cluster number in scRNASeq clustering by Seurat package
Seurat
RNA-Seq
single-cell
updated 5 months ago by
Ram
43k • written 5.4 years ago by
wenchuan.xie
▴ 40
17
votes
11
replies
11k
views
6 follow
Tool:
Pyfaidx: Efficient, "Pythonic" Random Access To Fasta Files Using Samtools-Compatible Indexing
fasta
python
samtools
updated 10 months ago by
Ram
43k • written 10.2 years ago by
Matt Shirley
10k
122
votes
44
replies
11k
views
24 follow
News:
Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta
biostars
updated 6 months ago by
Ram
43k • written 11.5 years ago by
Istvan Albert
100k
1,000 results • Page
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Answer: Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer ver
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A: How To Merge Two Fastq.Gz Files?
Answer: Annotating file using bcftools
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Comment: Can I perform a correlation test with 3 biological replicates per condition?
by
ATpoint
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I think you're misunderstanding some concepts here. WGCNA is a framework that defines modules based on how and which genes are correlated …
Comment: Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer ver
by
GenoMax
142k
> most up-to-date build Major build of the genome remains GRCh38. What you are looking at is the latest patch release for that build. Only…
Comment: Can I perform a correlation test with 3 biological replicates per condition?
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manuelmourato25
• 0
Thank you @atpoint . My apologies, maybe I should rephrase the question. I read the WGCNA docs already, and for the Pearson correlation tes…
Comment: How to extract cells of different species after mapping with combined genome?
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Can you confirm that this answer is specific for `singleron` technology and associated bioinformatics software.
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142k
What OS are you using? Are you able to run `blastn --help` and does it produce the in-line help? > I used many query file.fasta And tho…
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82k
> However, even though 3 biological replicates per condition seems to be the norm in these experiments, many papers discuss that we need at…
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
ATpoint
82k
> I have curiosity, why do you make a desing with interceptor and without contrast matrix? Because for a 2-group comparison you do not nee…
Comment: Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer ver
by
ATpoint
82k
If you have a one-click workflow ready and the necessary computation power to casually run it, then go for it. If it is any greater effort …
Comment: Seurat v5 and how to correctly integrate across multiple experiments
by
Papyrus
★ 2.9k
In my experience integration methods are also often used for different samples/batches across the same technology. The crucial thing is to …
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
egascon
• 0
Thank you very much! I have repeated the code adding arrayWeights() and it's works! In this case, I have a desing without intercept and c…
Comment: Is there any way to modify this pie chart ?
by
ohtang7
▴ 40
Thank you, I've tried but I see only some appear in the chart in wrong segments. Could you help me to solve this how ? ![enter image desc…
Comment: perseus software (version 1.5.5)
by
DGTool
▴ 10
If the tool mentioned relates to the Perseus application from the Cox lab ([here][1]), it should be free to download after accepting the li…
Answer: Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer ver
by
DGTool
▴ 10
At least so far to my knowledge, I don't think it would be worth re-mapping to GRCh38.p14, if it is too much trouble or with what you're lo…
Answer: How to extract cells of different species after mapping with combined genome?
by
Tony
• 0
From the marker genes of each cluster, we can determine whether the cluster belongs to human or mouse. Human genes are all capitalized, whi…
Comment: In one PCA plot, can I calculate the percentage of different factors that contri
by
diqixiaoyaoer
▴ 10
Thanks a lot. It is almost what I need but not all. From your script, I can get information that how much degree different samples contri…
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