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1,000 results • Page
4 of 20
Sort: replies
Rank
Views
Votes
Replies
131
votes
27
replies
40k
views
14 follow
Why Are There Many Rna-Seq Hits To Intronic Regions?
rna-seq
updated 11 months ago by
Ram
38k • written 10.9 years ago by
lh3
33k
27
votes
27
replies
29k
views
10 follow
Split Fastq Files Into Chunks Of 1M Reads
split
fastq
updated 8 months ago by
opplatek
▴ 240 • written 11.6 years ago by
Bioscientist
★ 1.7k
63
votes
27
replies
26k
views
18 follow
Data Too Big To Be Stored In Memory: Common Options
python
updated 27 days ago by
Ram
38k • written 10.3 years ago by
Click downvote
▴ 720
42
votes
27
replies
4.4k
views
12 follow
What Do You Think Microsoft Biology Foundation?
updated 4 months ago by
Ram
38k • written 11.8 years ago by
Sirus
▴ 820
53
votes
27
replies
3.5k
views
11 follow
Should General Programming Questions Actually Be Posted To Biostar?
meta
biostars
updated 5 weeks ago by
Ram
38k • written 11.7 years ago by
Pablo Pareja
★ 1.6k
294
votes
27
replies
41k
views
33 follow
Forum:
Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
RNA-Seq
sequencing
papers
updated 7 months ago by
Ram
38k • written 7.2 years ago by
CandiceChuDVM
★ 2.4k
12
votes
26
replies
29k
views
getting intersect between two lists of genes in R
gene
R
updated 8 months ago by
Ram
38k • written 7.4 years ago by
fi1d18
★ 4.1k
136
votes
26
replies
23k
views
14 follow
Best Way For A Beginner To Get Up To Speed On Unix Quickly?
unix
perl
genomics
updated 5 weeks ago by
Ram
38k • written 11.2 years ago by
Brett Thomas
▴ 300
118
votes
26
replies
32k
views
22 follow
Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
DESeq
Kallisto
RNASeq
Salmon
DESeq2
updated 12 days ago by
e.r.zakiev
▴ 30 • written 7.8 years ago by
mhockin
▴ 610
31
votes
26
replies
8.0k
views
12 follow
How To Discard Sequences Longer Than N Nucleotides ?
small
rna
data
updated 6 months ago by
Ram
38k • written 10.1 years ago by
2011101101
▴ 110
15
votes
26
replies
4.5k
views
How to interpret the result of GO analysis using Ontologizer / mapping GO IDs to GO TERMS ?
gene-ontology
R
RNA-Seq
updated 11 months ago by
Ram
38k • written 8.1 years ago by
jack
▴ 960
37
votes
26
replies
3.9k
views
7 follow
Ngs Challenge: Can You Give An Insight About This Imaginary Genetic Disease ?
next-gen-sequencing
updated 5 weeks ago by
Ram
38k • written 11.3 years ago by
Pierre Lindenbaum
153k
64
votes
26
replies
11k
views
7 follow
Tutorial:
Parallel processing in R
biocparallel
mclapply
foreach
R
updated 7 days ago by
Ram
38k • written 5.5 years ago by
Kevin Blighe
84k
105
votes
26
replies
38k
views
23 follow
How To Create Mutation Diagram In R Or In Any Tools?
mutation
domain
r
updated 5 months ago by
Ram
38k • written 10.2 years ago by
henryvuong
▴ 810
64
votes
26
replies
11k
views
11 follow
Tutorial:
Generating consensus sequence from bam file
fasta
consensus
bam
updated 8 days ago by
Ram
38k • written 4.0 years ago by
finswimmer
16k
65
votes
26
replies
18k
views
13 follow
Forum:
Macosx For Bioinformatics?
linux
updated 20 days ago by
Ram
38k • written 9.3 years ago by
Eric Normandeau
11k
171
votes
26
replies
6.8k
views
12 follow
How Do You Acknowledge Biostar And Its Contributors In Your Research Output?
meta
biostars
updated 5 weeks ago by
Ram
38k • written 12.1 years ago by
Andra Waagmeester
3.2k
20
votes
26
replies
4.9k
views
9 follow
Is there a better tool for visualizing your variants after annotation than Excel?
annotations
variants
updated 7 months ago by
Pierre Lindenbaum
153k • written 5.0 years ago by
Tania
▴ 160
16
votes
26
replies
14k
views
16 follow
bedtools coverage gives error received illegal bin number, but that number isn't in my data!
ChIP-Seq
bedtools
updated 8 weeks ago by
Ram
38k • written 6.1 years ago by
tara.alpert
▴ 30
9
votes
26
replies
7.6k
views
GREP: out of memory
Deseq2
macOS
gff
HEloci
updated 4 days ago by
Ram
38k • written 4.7 years ago by
jaqx008
▴ 110
68
votes
26
replies
24k
views
15 follow
Tutorial:
How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
RNA-seq
updated 19 days ago by
Ram
38k • written 9.1 years ago by
Istvan Albert
97k
38
votes
26
replies
9.9k
views
Remove optical duplicates from bam file
sequencing
updated 8 months ago by
Ram
38k • written 8.5 years ago by
Anna S
▴ 510
26
votes
26
replies
3.3k
views
Are my RNA-seq datasets strand-specific?
alignment
next-gen-sequencing
RNA-Seq
updated 8 months ago by
Ram
38k • written 7.1 years ago by
fi1d18
★ 4.1k
6
votes
26
replies
4.2k
views
6 follow
Is there a limit for SAMTOOLS tview option?
alignment
updated 6 months ago by
jkim
▴ 130 • written 5.4 years ago by
bioplanet
▴ 60
4
votes
26
replies
15k
views
10 follow
ADMIXTURE and R, color meaning on barplot in studing population ancestry, K value
R
gene
updated 6 weeks ago by
dr.fakharunnisa
• 0 • written 7.5 years ago by
dirranrak
▴ 20
6
votes
26
replies
7.4k
views
Realign BAM files to other reference file
bam
samtools
updated 1 hour ago by
Ram
38k • written 4.7 years ago by
marongiu.luigi
▴ 670
25
votes
26
replies
3.0k
views
warning in R
R
updated 10 weeks ago by
Ram
38k • written 7.8 years ago by
fi1d18
★ 4.1k
8
votes
26
replies
3.6k
views
Fasta sequence replacement based on header name
alignment
Assembly
sequencing
RNA-Seq
updated 3 months ago by
Ram
38k • written 7.7 years ago by
seta
★ 1.8k
34
votes
26
replies
14k
views
13 follow
Reliable Fastq compression programs
fastq
compression
reliability
updated 4 months ago by
jena
▴ 250 • written 7.4 years ago by
Eric Normandeau
11k
24
votes
26
replies
2.5k
views
Tool:
ClinCNV: CNV detection from short reads
cnv
calling
cna
Tool
variant
9 months ago by
German.M.Demidov
★ 2.9k
5
votes
26
replies
6.0k
views
Pre-computed list of genes in LD with a SNP with r2 from 1000Genomes / hg19
genomics
snp
ld
updated 3 months ago by
Ram
38k • written 8.6 years ago by
Khader Shameer
18k
73
votes
25
replies
97k
views
14 follow
How to count fastq reads
sequence
next-gen
fastq
reads
updated 8 months ago by
Ram
38k • written 7.9 years ago by
Chenglin
▴ 250
7
votes
25
replies
9.4k
views
6 follow
Tool:
MIGEC: towards error-free profiling of immune repertoires
sequencing-error
tcr
molecular-barcode
antibody
Tool
updated 5 months ago by
Ram
38k • written 8.9 years ago by
mikhail.shugay
3.5k
94
votes
25
replies
31k
views
11 follow
Tutorial:
Fastq Quality Control Shootout
quality
qc
trimming
fastq
updated 28 days ago by
Ram
38k • written 10.5 years ago by
Istvan Albert
97k
136
votes
25
replies
75k
views
14 follow
Tutorial:
Piping With Samtools, Bwa And Bedtools
unix
samtools
bwa
bedtools
updated 11 months ago by
Ram
38k • written 10.9 years ago by
Ying W
★ 4.2k
69
votes
25
replies
6.2k
views
16 follow
How Do You Explain What You Do To The Guy On The Street Or Your Mum?
general
updated 5 weeks ago by
Ram
38k • written 13.0 years ago by
Dave Gerrard
▴ 190
13
votes
25
replies
10k
views
9 follow
Tool:
Mitcr: A Software Tool For Analyzing T-Cell Receptor Sequencing Data
ngs
analysis
sequencing
software
Tool
updated 7 months ago by
Ram
38k • written 9.6 years ago by
mikhail.shugay
3.5k
18
votes
25
replies
11k
views
6 follow
Extracting features or gene from PCA after calculating PCA for downstream analysis
R
8 months ago by
krushnach80
★ 1.1k
8
votes
25
replies
1.9k
views
construction of a database
sql
noSQL
neo4j
database
updated 1 day ago by
Ram
38k • written 22 months ago by
Debut
▴ 20
38
votes
25
replies
16k
views
14 follow
GO analysis: DAVID vs GREAT vs GOrilla
RNA-Seq
ChIP-Seq
GO
gene ontology
updated 8 months ago by
Ram
38k • written 7.1 years ago by
biostart
▴ 370
58
votes
25
replies
36k
views
15 follow
Tutorial:
Protocol To Downlad TCGA Data From GDC
GDC
methylation
TCGA
updated 5 days ago by
Ram
38k • written 6.7 years ago by
Shicheng Guo
★ 9.3k
15
votes
25
replies
9.7k
views
9 follow
Calculating GC content from BAM file by BED file
cg content
bam
bed
bedtools
updated 10 months ago by
Harry
▴ 10 • written 8.3 years ago by
Paul
★ 1.5k
111
votes
25
replies
64k
views
14 follow
Is My Bam File Sorted ?
bam
next-gen
sequencing
sort
updated 6 weeks ago by
Miguel
▴ 10 • written 12.1 years ago by
Pierre Lindenbaum
153k
11
votes
25
replies
4.9k
views
15 follow
News:
Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW
News
updated 6 months ago by
Ram
38k • written 7.5 years ago by
DCGenomics
▴ 320
94
votes
25
replies
74k
views
20 follow
Extract Sub-Set Of Regions From Vcf File
vcf
tabix
genome
filter
updated 9 days ago by
4galaxy77
2.6k • written 10.8 years ago by
Rubal7
▴ 820
45
votes
25
replies
2.8k
views
9 follow
Blog:
Evolution of Biostars
meta
Biostars
updated 5 weeks ago by
Ram
38k • written 4.1 years ago by
venu
7.0k
12
votes
25
replies
1.3k
views
Transform Data into DNA picture
DNA
updated 3 months ago by
WouterDeCoster
47k • written 3 months ago by
anasjamshed
▴ 120
17
votes
25
replies
4.8k
views
Sudden quality drop in the middle of HiSeq R1 reads but not in R2?
metatranscriptomics
RNA-Seq
Illumina
updated 9 months ago by
Ram
38k • written 8.0 years ago by
sentausa
▴ 650
23
votes
25
replies
2.2k
views
bash and awk code
bash
awk
terminal
3 months ago by
Sam
▴ 150
15
votes
25
replies
1.8k
views
6 follow
Forum:
How to get help on a question that has been buried?
meta
biostars
updated 5 weeks ago by
Ram
38k • written 7.0 years ago by
skbrimer
▴ 690
1,000 results • Page
4 of 20
Recent Votes
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Comment: Can I use abundance from Tximport to compare the expression level of transcript
Get Amino Acid Changes From Snp Calls
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Comment: Can I use abundance from Tximport to compare the expression level of transcript
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Your account has been suspended for bad behavior. I've re-opened the posts that you deleted because those posts belong to the community, no…
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I wrote https://jvarkit.readthedocs.io/en/latest/SamRemoveDuplicatedNames/ to remove this kind of reads, but I'm not sure it's what you're …
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can you delete my account please, because i can't do it by myself. Thank you
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Thank you very much! I will try using the singularity options. Thank you for that aswell. I will keep an eye on the docker hub for newer v…
Comment: Is there a site that takes a list of uniprot IDs/gene IDs as input and create ph
by
Pierre Lindenbaum
153k
ncbi blast a sequence accession vs the other ? then select the multiple sequence alignment view ?
Comment: Can I use abundance from Tximport to compare the expression level of transcript
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aimanbarki
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So can I average 6 replicates??
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7.7k
Don't use `--merge_loci` in your command line this was for AGAT version <1.0.0 (and only few scripts), now this is handled via the config.y…
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> Because you just answer No we don't. I think you're confusing this professional forum contributed to by volunteers with a customer suppo…
Comment: Can I use abundance from Tximport to compare the expression level of transcript
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Ram
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Oh, you can just use TPM to do that. Within sample comparison is a completely different (and much easier) game.
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Unfortunately yes, there does seem to be a problem with using the older version - when I came to do more analysis yesterday, the enrichKEGG…
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Nobody
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Because you just answer when it's a stupid question or when I ask a lot of questions. This is for asking questions not for being judged by …
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