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744
votes
162
replies
113k
views
101 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 5 weeks ago by 1.8k • written 6.5 years ago by 98k
122
votes
42
replies
9.0k
views
21 follow
News: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta biostars
updated 3 months ago by 39k • written 10.5 years ago by 98k
81
votes
39
replies
6.2k
views
11 follow
News: State Of Biostar - Future Directions (January 2013)
biostars
updated 3 months ago by 39k • written 10.4 years ago by 98k
59
votes
31
replies
3.7k
views
12 follow
News: Example of how bioinformaticians can publish in Scientific Reports (by nature publishing group) using publicly available NGS data
publication NGS
updated 7 weeks ago by 39k • written 6.4 years ago by 9.9k
57
votes
24
replies
5.6k
views
14 follow
News: Join us in building a bioinformatics resource: The Biostar Handbook
biostar-handbook
updated 8 months ago by 39k • written 7.7 years ago by 98k
54
votes
24
replies
3.3k
views
12 follow
News: Big news from Microsoft. BASH on windows.
windows
updated 8 weeks ago by 39k • written 7.2 years ago by ★ 3.1k
51
votes
17
replies
3.3k
views
News: Biostars 3.0 is now under testing. It has groups, charms and other interesting features.
meta biostars
updated 3 months ago by 39k • written 8.2 years ago by 98k
48
votes
13
replies
25k
views
10 follow
News: The New Grch38 Human Genome Browser Has Arrived!
ucsc assembly GRCh38 hg38
updated 16 months ago by 39k • written 9.2 years ago by 27k
45
votes
16
replies
5.1k
views
12 follow
News: Google announces DeepVariant
genome deep-learning google
updated 17 days ago by 39k • written 5.5 years ago by ▴ 970
45
votes
19
replies
5.7k
views
8 follow
News: Gamestorming For Bioinformatics
gamestorming
updated 3 months ago by 39k • written 10.7 years ago by 27k
33
votes
5
replies
3.4k
views
News: FINAL CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
Epigenetics Workshop Bisulfite-Sequencing
updated 8 weeks ago by 39k • written 7.0 years ago by ▴ 460
32
votes
6
replies
13k
views
7 follow
News: Ncbi Releases Entrez Direct, The Entrez Utilities On The Unix Command Line
ncbi genbank pubmed command-line entrez
updated 3 months ago by 39k • written 9.3 years ago by 154k
31
votes
4
replies
6.2k
views
News: Rosalind: A Novel Bioinformatics Education Platform
education
updated 3 months ago by 39k • written 10.7 years ago by ▴ 310
27
votes
9
replies
3.6k
views
News: OSX 10.11 released 30th Sep will be "rootless"
mac osx
updated 8 months ago by 39k • written 7.7 years ago by 13k
27
votes
7
replies
3.2k
views
News: The Biostar Swarm: A Visualization
biostars
updated 3 months ago by 39k • written 10.3 years ago by 98k
25
votes
7
replies
5.8k
views
News: Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi pubmed
updated 3 months ago by 39k • written 9.6 years ago by 154k
25
votes
7
replies
2.4k
views
6 follow
News: Who qualifies to be a bioinformatician?
resume bioinformatician vc
updated 11 months ago by 39k • written 8.1 years ago by 154k
24
votes
21
replies
6.1k
views
9 follow
News: Misunderstood parameter of NCBI BLAST
blast alignment
updated 10 days ago by 39k • written 4.7 years ago by ★ 3.4k
24
votes
7
replies
4.1k
views
News: #Bioinformatics Crowdcoding
crowd-coding
updated 3 months ago by 39k • written 9.9 years ago by 154k
23
votes
7
replies
4.1k
views
News: Research accounts on GitHub
github git
updated 3 months ago by 39k • written 9.1 years ago by 154k
22
votes
3
replies
2.7k
views
News: Biostar: 10,000 Question Milestone
meta
updated 3 months ago by 39k • written 10.0 years ago by 98k
22
votes
10
replies
5.0k
views
News: samtools/bcftools/htslib 1.0 released
htslib samtools bcftools
updated 17 months ago by 39k • written 8.8 years ago by ★ 2.2k
22
votes
9
replies
6.1k
views
News: Epigenetics Workshop - DNA Methylation Data Analysis
bisulfite-sequencing workshop epigenetics
updated 5 months ago by 39k • written 8.0 years ago by 9.9k
21
votes
7
replies
7.2k
views
News: Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
transcript RNA-seq gene
updated 3 months ago by 39k • written 10.5 years ago by ▴ 250
21
votes
11
replies
8.9k
views
6 follow
News: NovaSeq from Illumina (updated info)
illumina NovaSeq
updated 7 weeks ago by 39k • written 6.4 years ago by 129k
21
votes
16
replies
5.2k
views
6 follow
News: Pandora's Toolbox - a collection of bioinformatics programs
Assembly alignment RNA-Seq
updated 14 months ago by 39k • written 8.4 years ago by ★ 1.1k
20
votes
3
replies
2.4k
views
News: Nature Comment: Core services: Reward bioinformaticians
career-path
updated 11 months ago by 39k • written 8.2 years ago by ★ 2.2k
19
votes
4
replies
2.1k
views
News: How to analyze NGS data: An overview of nine different IT solutions
NGS RNA-Seq DNA-Seq
updated 7 weeks ago by 39k • written 6.6 years ago by 9.9k
19
votes
11
replies
6.4k
views
News: Solid Software Tools: Denovo Assembly/Xsq Tools Pipeline Mirrored At Biostar
SOLID
updated 3 months ago by 39k • written 10.8 years ago by 98k
18
votes
3
replies
2.2k
views
News: LAST CALL: Next-Generation Sequencing Data Analysis: A Practical Introduction (Frankfurt, Germany) - 2 seats left
DNA-Seq NGS Workshop Variant-Calling
updated 10 months ago by 39k • written 6.3 years ago by 9.9k
18
votes
11
replies
3.5k
views
News: Full Genome Sequencing Service 30x whole human genome sequencing for $3,490 (project cancelled)
genome next-gen-sequencing
updated 17 months ago by 39k • written 8.7 years ago by ▴ 100
17
votes
6
replies
8.5k
views
News: Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
methylation RNA-seq
updated 3 months ago by 39k • written 9.2 years ago by 9.9k
17
votes
7
replies
8.6k
views
News: Upcoming NGS Workshop: A Beginner's Guide to NGS Data Analysis
workshop Assembly transcriptomics RNA-Seq
updated 15 months ago by 39k • written 8.5 years ago by 9.9k
17
votes
9
replies
3.3k
views
News: My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
updated 3 months ago by 39k • written 9.7 years ago by 154k
16
votes
1
reply
4.6k
views
News: Samtools/htslib/bcftools 1-3 released
htslib samtools bcftools
updated 8 weeks ago by 39k • written 7.5 years ago by 103k
15
votes
4
replies
2.3k
views
News: Call For Nominations: 2013 Benjamin Franklin Award
benjamin-franklin-award award
updated 3 months ago by 39k • written 10.3 years ago by 154k
15
votes
3
replies
6.5k
views
News: Top Bioinformatics Contributions Of 2013
bioinformatics
updated 3 months ago by 39k • written 9.5 years ago by ★ 1.1k
15
votes
18
replies
7.4k
views
6 follow
News: New Free Community Tutorial Website For Bioinformatics Learning
ChIP-seq genome snp RNA-seq
updated 3 months ago by 39k • written 9.9 years ago by ▴ 610
15
votes
4
replies
4.1k
views
News: Workshop: Genomic Data Visualization and Interpretation (Berlin, Germany)
dataviz GenVisR next-gen R
updated 7 weeks ago by 39k • written 6.2 years ago by ★ 2.3k
15
votes
2
replies
10k
views
News: Breaking News - Illumina MiniSeq
next-gen-sequencing
updated 10 months ago by 39k • written 7.4 years ago by ★ 1.3k
14
votes
5
replies
3.0k
views
News: Science Article On Social Influence Bias On Voting Patterns ("Herding") With Impact On Biostar.
meta biostars
updated 3 months ago by 39k • written 9.8 years ago by 52k
14
votes
4
replies
3.1k
views
News: FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq next-gen NGS
updated 10 months ago by 39k • written 7.3 years ago by 9.9k
14
votes
2
replies
5.1k
views
News: Open Targets, identifying targets for drug development in the treatment of diseases.
database Drug open-targets
updated 8 weeks ago by 39k • written 7.0 years ago by ★ 5.2k
14
votes
3
replies
3.4k
views
News: Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
seminar symposium conference
updated 12 days ago by 39k • written 5.0 years ago by 5.7k
14
votes
1
reply
2.1k
views
News: The Gene Ontology Handbook (open access)
training handbook GO
updated 7 weeks ago by 39k • written 6.5 years ago by ▴ 740
14
votes
6
replies
6.6k
views
News: FINAL CALL: NGS Workshop - A Beginner's Guide to NGS Data Analysis (2 last seats)
NGS RNA-Seq workshop
updated 6 months ago by 39k • written 7.9 years ago by 9.9k
14
votes
11
replies
2.4k
views
6 follow
News: Announcing bioSyntax: Syntax highlighting for biological files
computational-biology
updated 17 days ago by 39k • written 5.4 years ago by ▴ 170
13
votes
8
replies
2.3k
views
News: NCBI is going to eliminate GI identifiers
ncbi GI
updated 8 weeks ago by 39k • written 7.2 years ago by ★ 2.9k
13
votes
7
replies
5.2k
views
News: Free HiSeq X Ten human genome fastq test data
HiSeq-X-Ten Human-genome Fastq next-gen
updated 18 months ago by 39k • written 8.8 years ago by ★ 1.8k
13
votes
2
replies
2.7k
views
News: A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
encode
updated 3 months ago by 39k • written 10.7 years ago by 98k
1,000 results • Page 1 of 20
Recent Votes
Comment: STAR GenomeIndex output (which is the BAM file?)
Answer: [Meta] Use of AI
Answer: h5ad cellxgene to R
Comment: What is the benefit of knowing the source of contamination when we have RNAseq d
Answer: Rna-Seq Pipeline
Comment: Create customized gene annotation file
Answer: [Meta] Use of AI
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Comment: variant allelic fraction by Pierre Lindenbaum 154k
this is not a field provided by VEP.
Answer: WGCNA Trait File Issues by Jennifer M • 0
![enter image description here][1] [1]: /media/images/0cf4eaa7-9550-4bbb-b43e-208dc787
Comment: Pairwise Alignment by WouterDeCoster 47k
> for whole genome analysis What do you mean with that? You provide too little information for us to answer your question.
Comment: Getting species names and taxa id from assembly accession number by GenoMax 129k
There must be some temporary glitch. Following command works (via EntrezDirect): $ esearch -db assembly -query GCA_000001405.29 | esu…
Comment: h5ad cellxgene to R by abmmki • 0
matrix=adata.X.toarray() feature_names = adata.var['feature_name'] pd.DataFrame(data=matrix, index=adata.obs_names, c…
Comment: h5ad cellxgene to R by abmmki • 0
I am trying use the same data and same method. But when I read the csv expression matrix in R, it frozen. Could you share your final seurat…
Comment: h5ad cellxgene to R by abmmki • 0
I am trying use the same data and same method. But when I read the csv expression matrix in R, it frozen. Could you share your final seurat…
Comment: (ERR): "index/Trinity.fa" does not exist or is not a Bowtie 2 index Exiting now by eimanpharmacist ▴ 20
I think the problem in bowtie2 installation. it was installed using this: `conda install -c bioconda bowtie2` I removed it then re-installe…
Comment: Where to get the molecular subtype information of STAD sample in TCGA by Hamid Ghaedi 2.9k
Give `TCGAbiolinks` package a try.
Comment: How to calculate TPM from featureCounts output by survive • 0
hi, So i will need to download the raw .fastq file from SRA and run salmon/Kallisto, instead of using the featureCounts?
Answer: calculate p value and associated z score for snp-gene pair by LChart 2.6k
The simplest thing to do would be to 'force' matrixeQTL to output everything by setting `pvOutputThreshold` to 1; this should give you all …
Comment: (ERR): "index/Trinity.fa" does not exist or is not a Bowtie 2 index Exiting now by eimanpharmacist ▴ 20
It is completed but I can not find any bam files, as you see above, I should get a bowtie2.bam file as an output but I did not.
Comment: [Meta] Use of AI by GenoMax 129k
It will be up to the people posting the AI assisted/generated comments/answers to add a disclaimer/note line to their posts for now. A butt…
Comment: Is a human genome file with reference as NCBI37 the same as hg19? by Ram 39k
Don't cross-post, especially on weekends. It looks like you're in a hurry and you don't care about annoying multiple communities.
Comment: Come work with me! Bioinformatician - Boston MA by Joseph • 0
I am in Boston and my current position Principal Scientist in IHC, in situ Hybridization. I use Bioinformatics but don't have a formal degr…
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