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235 results • Page
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4
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News:
ENCODE Users' Meeting
encode
ucsc
conference
functional-genomics
ensembl
updated 5 months ago by
Ram
37k • written 7.6 years ago by
Emily
23k
11
votes
1
reply
2.6k
views
News:
NGS Data Analysis Workshop for Beginners in Munich (full)
RNA-Seq
training
NGS
workshop
updated 6 months ago by
Ram
37k • written 6.5 years ago by
David Langenberger
9.8k
0
votes
1
reply
674
views
News:
::LAST CALL:: RNA-Seq Data Analysis Workshop, February 28 - March 3, 2022 in Berlin
RNAseq
Transcriptomics
RNA
11 months ago by
David Langenberger
9.8k
4
votes
1
reply
1.9k
views
News:
Mark2Cure launches tool to help crowd-source curation of the biomedical literature
crowd-sourcing
updated 5 weeks ago by
Ram
37k • written 8.0 years ago by
Obi Griffith
20k
4
votes
1
reply
1.6k
views
News:
NCBI BLAST URL domain changes to take effect December 1, 2014
blast
ncbi
updated 11 months ago by
Ram
37k • written 8.2 years ago by
rtliu
★ 2.2k
7
votes
1
reply
429
views
News:
NGSymposium - Conference in Computational Biology, 23-24.09
ML
statistics
conference
ngschool
8 months ago by
kzkedzierska
▴ 290
0
votes
1
reply
248
views
News:
Courses in January - still a few seats available
Bioinformatics
Unix
RShiny
Genomics
R
updated 5 weeks ago by
qiz218591
▴ 10 • written 5 weeks ago by
carlopecoraro2
★ 2.2k
5
votes
1
reply
1.2k
views
News:
Bioinformatics Contest 2017
Contest
updated 7 weeks ago by
Ram
37k • written 6.1 years ago by
venu
7.0k
3
votes
1
reply
359
views
News:
Free web seminars related to small non-coding RNA bioinformatics
smallRNA
microRNA
updated 6 weeks ago by
Ram
37k • written 8 months ago by
laurent.guyon
▴ 60
8
votes
1
reply
975
views
News:
Clustered `nr` database is now available for web blast @NCBI
nr
blast
updated 11 months ago by
Mensur Dlakic
★ 22k • written 12 months ago by
GenoMax
125k
0
votes
1
reply
314
views
News:
Introduction to Deep Learning course
DeepLearning
MachineLearning
bigdata
updated 9 months ago by
cpad0112
21k • written 9 months ago by
carlopecoraro2
★ 2.2k
0
votes
1
reply
365
views
News:
6th Berlin Summer School in NGS Data Analysis (June 13-17, 2022)
RNAseq
DNAseq
transcriptomics
10 months ago by
David Langenberger
9.8k
1
vote
1
reply
2.3k
views
News:
R package PopGenome: http://popgenome.weebly.com/
population genomics
popgenome
R
VCF
News
updated 6 months ago by
Ram
37k • written 7.8 years ago by
bastianxpfeifer
▴ 50
1
vote
1
reply
2.2k
views
News:
Bioinformatics for Cancer Genomics Workshop
Cancer-Genomics
updated 6 months ago by
Ram
37k • written 7.0 years ago by
meyer.ann
▴ 30
1
vote
1
reply
2.3k
views
News:
Benefits of DNA Testing - Xcode Life sciences provides preventive healthcare solution
personal-genomics
genetic-testing
updated 19 days ago by
Ram
37k • written 7.7 years ago by
sabitha
• 0
0
votes
1
reply
3.0k
views
News:
Call For Book Chapters: Big Data Analytics in Genomics (Springer USA)
Book-Chapter
CFP
updated 5 months ago by
Ram
37k • written 7.2 years ago by
kc.w
▴ 10
4
votes
1
reply
355
views
News:
Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop
ngs
data-analysis
updated 6 months ago by
Ram
37k • written 6 months ago by
David Langenberger
9.8k
0
votes
1
reply
674
views
News:
Hands-On RNA-Seq Data Analysis Workshop in Leipzig, Germany (October 25-28, 2022)
RNA-Seq
Transcriptomics
NGS
Workshop
6 months ago by
David Langenberger
9.8k
0
votes
1
reply
763
views
News:
::FINAL CALL:: Online Course | A Practical Introduction to NGS Data Analysis | March 30 - April 1, 2022
DNA-Seq
RNA-Seq
Workshop
10 months ago by
David Langenberger
9.8k
0
votes
1
reply
330
views
News:
API for accessing SARS-COV-2 genomic data
rpackage
sars
genomics
api
covid
updated 7 months ago by
GenoMax
125k • written 7 months ago by
Emily
• 0
1
vote
1
reply
1.2k
views
News:
Genomic Medicine Meeting VIII: NHGRI's Genomic Medicine Portfolio; livestream June 8-9
precision-medicine
updated 25 days ago by
Ram
37k • written 7.6 years ago by
Mary
11k
0
votes
1
reply
336
views
News:
Sex Chromosome Evolution course
Bioinformatics
Genomics
SexChromosomeEvolution
updated 21 days ago by
nanodano
▴ 10 • written 21 days ago by
carlopecoraro2
★ 2.2k
4
votes
1
reply
2.0k
views
News:
2014 ISCB Wikipedia Article Competition announcement
ISCB
competition
Wikipedia
written 8.5 years ago by
Ben
★ 2.0k
0
votes
1
reply
193
views
News:
Research Training In NGS Data Analysis
analysis
data-analysis
updated 8 weeks ago by
Ram
37k • written 8 weeks ago by
RASALSI
• 0
7
votes
1
reply
2.5k
views
News:
Integrated Genome Browser version 8.3 released - new native installer
ChIP-Seq
RNA-Seq
igv
igb
updated 10 months ago by
Ram
37k • written 8.0 years ago by
Ann
★ 2.3k
6
votes
1
reply
1.7k
views
News:
Contest: Antibody Marathon Match Problem: ABCSpeedup
contest
News
updated 10 months ago by
Ram
37k • written 8.1 years ago by
Pierre Lindenbaum
152k
0
votes
1
reply
2.1k
views
News:
Nature Index: Novogene is teaming up with laboratories worldwide for life sciences and human health research
NGS
Nature
Sequencing
updated 6 weeks ago by
Ram
37k • written 10 months ago by
Novogene
▴ 210
0
votes
1
reply
1.9k
views
News:
Call for Book Chapter- Essentials of Bioinformatics Vol. I-III (Springer)
medicine
sequencing
agriculture
updated 7 weeks ago by
Ram
37k • written 5.3 years ago by
bioinformatics.e
• 0
0
votes
0
replies
257
views
News:
Course - An introduction to Nanopore direct RNA Sequencing
NanoporeDirectRNAseq
11 months ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
340
views
News:
Final Call! Tomorrow (7/8) is the Deadline for Phase 1 submissions of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel
indel-calling
updated 6 weeks ago by
Ram
37k • written 6 months ago by
sarah_p
▴ 10
3
votes
0
replies
740
views
News:
Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI
Databases
BLAST
10 weeks ago by
PeterC_NCBI
▴ 180
0
votes
0
replies
234
views
News:
Bayesian regression modeling in R course
RegressionModeling
Bayesian
R
9 weeks ago by
carlopecoraro2
★ 2.2k
2
votes
0
replies
1.0k
views
News:
Biotech Weekly - First issue is out! - Weekly curated news about all things biotech
biotech
updated 7 weeks ago by
Ram
37k • written 7.6 years ago by
bs
▴ 30
0
votes
0
replies
232
views
News:
course: Data Visualization in Python
Visualisation
Python
Data
updated 3 months ago by
GenoMax
125k • written 3 months ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
163
views
News:
Course on Generalised Additive Models In R
Statistics
GAMs
R
20 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
191
views
News:
Nextflow online training
Nextflow
Workflow
Reproducibility
updated 7 weeks ago by
Ram
37k • written 10 weeks ago by
carlopecoraro2
★ 2.2k
3
votes
0
replies
544
views
News:
Nextflow Slack Channel
nextflow
slack
11 months ago by
ATpoint
68k
0
votes
0
replies
189
views
News:
Metabarcoding in Microbial Ecology
Metabarcoding
Qiime2
16S
MicrobialEcology
R
15 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
195
views
News:
Online course - Genome Assembly and Annotation
Longreads
Bioinformatics
GenomeAnnotation
Biodiversity
GenomeAssembly
22 days ago by
carlopecoraro2
★ 2.2k
1
vote
0
replies
261
views
News:
DATA ANALYSIS WITH THE TIDYVERSE in July (18th-21st).
tidyverse
data
R
analysis
9 months ago by
carlopecoraro2
★ 2.2k
3
votes
0
replies
6.3k
views
News:
A Bioinformatics Jobs AMA (Ask Me Anything) on Reddit
reddit
r
market
updated 5 months ago by
Ram
37k • written 7.1 years ago by
Leandro Lima
▴ 960
0
votes
0
replies
248
views
News:
A webinar about Harmony batch correction, by its author
scrna-seq
single-cell
rna-seq
9 months ago by
Jennifer Pham
▴ 450
0
votes
0
replies
177
views
News:
course: Population Genomic Inference from Low-coverage Whole-genome Sequencing Data
whole-genome
genomics
population
low-coverage
sequencing
updated 4 months ago by
Jeremy Leipzig
21k • written 4 months ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
285
views
News:
Reproducible Analysis With R course
Reproducibility
11 months ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
188
views
News:
Cellosaurus release 44 is available
cellosaurus
cell-line
updated 6 weeks ago by
Ram
37k • written 6 weeks ago by
Amos Bairoch
▴ 110
0
votes
0
replies
1.5k
views
News:
Live Webinar on Streamlining large scale analysis using the Strand NGS Pipeline Manager on 24 Feb 2016.
RNA-Seq
DNA-seq
strand-ngs
ChIP-Seq
updated 6 months ago by
Ram
37k • written 7.0 years ago by
Genomics
▴ 70
0
votes
0
replies
1.8k
views
News:
Importance of Sequencing in Characterizing Patterns of Ebola Transmission and Mutation
genome-sequencing
Ebola
updated 12 months ago by
Ram
37k • written 8.2 years ago by
support
▴ 640
1
vote
0
replies
220
views
News:
course Reproducible Analysis With R
R
Reproducibility
analysis
Data
4 months ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
229
views
News:
course - GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
Long-reads
Assembly
Nanopore
Genome
7 weeks ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
187
views
News:
Analysis of RNA sequencing data with R/Bioconductor course.
Bioconductor
RNAseq
R
12 weeks ago by
carlopecoraro2
★ 2.2k
235 results • Page
2 of 5
Recent Votes
A: from .BAM to .BAI using samtools
Comment: bgzip error 4
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
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Recent Awards •
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Popular Question
to
tianshenbio
▴ 160
Popular Question
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maxdlf12
• 0
Teacher
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Pierre Lindenbaum
152k
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LDT
▴ 220
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Recent Replies
Answer: trainGlimmerHMM Error while training a genome
by
congliu37
• 0
Hello, I got the same error using ~20,000 genes for training and it was solved by reducing training gene set. I assume GlimmerHMM was no…
Comment: How to Calulate Allele Frequency from a VCF File?
by
Jeremy Leipzig
21k
That's correct. You don't have biallelic alleles in mitochondria, so you can use either the Allele depth (AD) or depth of coverage (DP) for…
Comment: How to calculate tumor mutation burden (TMB)?
by
Fabio Marroni
★ 2.9k
I just published a [post][1] on my blog, in which I include a simple R function for computing TMB. Try to see if that helps. I followed the…
Comment: Gene Set Enrichment Analysis, pathway, metabolism
by
Rob
▴ 160
Thank you FrankStarling, ATpoint, jv, these were so helpful.
Comment: translate CDS to prot formatted with nt nubers
by
Pierre Lindenbaum
152k
> with nucleotide numbers and DNA/prot aligned line by line what does it mean ? Create a Minimal, Reproducible Example to enable others t…
Comment: How to translate CDS to an amino acid sequence
by
vvasta
• 0
I tried several of the online DNA translation tools but have not found one that would output DNA/prot alignment with nucleotide number w…
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb?
by
Pierre Lindenbaum
152k
but you already knew it. https://www.biostars.org/p/9551097/#9551098
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb?
by
Pierre Lindenbaum
152k
your question is not related to bioinformatics. Ask stackoverflow.com.
Comment: Statistical test for checking cis regulation?
by
Fabio Marroni
★ 2.9k
Hi lumos. It is not very clear to me what kind of information are you using for the test and how are you measuring cis-regulation. Are you …
Comment: Error 134 while aligning using hisat2
by
Fabio Marroni
★ 2.9k
Other instances of the same error were indeed related to disk [space][1]. Can you post the output of the command: `df -h /bams/`? Another p…
Comment: **Error: unable to open file or unable to determine types for file**
by
Pierre Lindenbaum
152k
``` Please ensure that your file is TAB delimited (e.g., cat -t FILE). - Also ensure that your file has integer chromosome coordinates in t…
Comment: bgzip error 4
by
Pierre Lindenbaum
152k
I/O error. Where are you writing , which filesytem ? do you have enough space ? what is the output of gzip < chr1.vcf.gz > chr1.vcf.gz…
Comment: Error: unable to open file or unable to determine types for file bed file
by
Neel
▴ 10
**Error: unable to open file or unable to determine types for file** Hi i am trying to run this commands **bedtools intersect -a Ec_k1…
Answer: Anti-miRNA oligonuclotide identification
by
Asan Emirsale
• 0
You should find complementary sequences to make the miRNA silent. Should it be the Biopython or another tool. The solution might be as simp…
Comment: counting reads in a fastq file using a refrence fasta file
by
vaslanzadeh
▴ 10
Thanks, this works but it is extremely slow, is there any other alternatives?
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