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900 results • Page 2 of 18
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News: Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
NGS next-generation-sequencing
updated 11 months ago by 43k • written 5.9 years ago by ★ 3.0k
0
votes
2
replies
1.8k
views
News: Exponential growth of data in biomedicine needs a skilled and experienced workforce
R biotech gene RNA-Seq
updated 11 months ago by 43k • written 6.8 years ago by ▴ 70
2
votes
2
replies
2.6k
views
News: Interview Dealing with RADseq data: some tips from our instructors
NGS RADseq
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
0
votes
2
replies
2.0k
views
News: Illumina iSeq 100 sequencer
firefly illumina iSeq100
updated 11 months ago by 43k • written 6.3 years ago by 141k
2
votes
2
replies
3.1k
views
News: Upcoming Hands-On NGS Data Analysis Workshops 2018
Mapping Workshop RNA-Seq Quality-Control DNA-Seq
updated 11 months ago by 43k • written 6.4 years ago by 11k
8
votes
2
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2.3k
views
News: The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast Assembly RNA-Seq
updated 11 months ago by 43k • written 7.0 years ago by ▴ 120
3
votes
2
replies
686
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
11 months ago by PeterC_NCBI ▴ 410
12
votes
2
replies
443
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
16 days ago by David Langenberger 11k
1
vote
2
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1.0k
views
News: Sage Bionetworks is seeking researchers and data scientists to participate in software user research!
research software
updated 11 months ago by 43k • written 5.2 years ago by ▴ 30
2
votes
2
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1.4k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
R next-gen-sequencing
updated 11 months ago by 43k • written 6.4 years ago by ★ 2.5k
1
vote
2
replies
759
views
News: Ensembl reduced functionality, early March
ensembl
updated 10 months ago by 43k • written 4.3 years ago by 23k
3
votes
2
replies
1.3k
views
News: Genome Informatics meeting software list
meetings genomics informatics software
updated 11 months ago by 43k • written 6.5 years ago by 26k
1
vote
2
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2.4k
views
News: Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics Metagenomics
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.5k
4
votes
2
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2.9k
views
News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
5 months ago by Ming Tommy Tang ★ 3.9k
3
votes
2
replies
736
views
News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
6
votes
2
replies
2.1k
views
News: RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
NGS RNA-Seq workshop
updated 11 months ago by 43k • written 6.8 years ago by 11k
8
votes
2
replies
777
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
20 days ago by David Langenberger 11k
1
vote
2
replies
1.8k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor
Statistics R Metagenomics Bioconductor
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
3
votes
2
replies
565
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
27 days ago by Johannes W. Dietrich • 0
3
votes
2
replies
1.0k
views
News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing RNA-seq multi-omics ngs
updated 11 months ago by 43k • written 5.3 years ago by • 0
1
vote
2
replies
1.4k
views
News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling rare-disease dna-seq strand-ngs
updated 11 months ago by 43k • written 6.1 years ago by ▴ 70
4
votes
2
replies
595
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
7 months ago by PeterC_NCBI ▴ 410
4
votes
2
replies
1.3k
views
News: Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop methylation bisulfite
updated 10 months ago by 43k • written 4.6 years ago by ★ 1.0k
5
votes
2
replies
921
views
News: The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
BioCompute challenge
updated 10 months ago by 43k • written 4.8 years ago by ▴ 70
2
votes
2
replies
1.4k
views
News: GeNets: a unified web platform for network-based genomic analyses
networks pathways RNA-Seq visualization
updated 11 months ago by 43k • written 5.9 years ago by ★ 5.2k
0
votes
2
replies
1.7k
views
News: 2 Days Hands on Workshop on Transcriptome-Seq Data Analysis
RNA-Seq sequencing SNP Assembly
updated 11 months ago by 43k • written 6.9 years ago by • 0
2
votes
2
replies
522
views
News: Unix and Shell Scripting for Bioinformatics course
Bash Unix Shell-Scripting
4 months ago by carlopecoraro2 ★ 2.5k
0
votes
2
replies
1.9k
views
News: Webinar: Multi-omics: Challenges, opportunities and application to biomarker discovery
biomarker next-gen-sequencing multiomics cancer
updated 11 months ago by 43k • written 6.8 years ago by ▴ 750
7
votes
2
replies
1.1k
views
News: NGS Data Analysis Workshops 2024
scRNA-seq dna-seq rna-seq nextflow
3 months ago by David Langenberger 11k
6
votes
2
replies
1.1k
views
News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.4k
0
votes
2
replies
2.6k
views
News: PART FUNDED SCHOLARSHIPS - Coding, data management, and Shiny applications using RStudio for evolutionary biologists and ecologists - May 2017
Rstudio R Shiny
updated 11 months ago by 43k • written 7.0 years ago by ▴ 110
0
votes
2
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2.1k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (13 - 16 March 2018)
NGS RNA-Seq sequencing
updated 11 months ago by 43k • written 6.3 years ago by 11k
0
votes
2
replies
208
views
News: NGS & Microarray Custom Data Analysis Training Program
snp RNA-Seq next-gen-sequencing ChIP-Seq
updated 10 months ago by 43k • written 4.8 years ago by • 0
0
votes
2
replies
1.5k
views
News: Webinar on fast and accurate DNA variant calling on 26 Apr 2017
variant-calling SNP gatk strand-ngs alignment
updated 11 months ago by 43k • written 7.0 years ago by ▴ 70
1
vote
2
replies
1.7k
views
News: Webinar: Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding
scRNAseq webinar rna-seq single-cell
updated 11 months ago by 43k • written 5.0 years ago by ▴ 580
2
votes
2
replies
1.6k
views
News: User-friendly Bioinformatics From RNA Seq to Biological Interpretation
machine-learning RNA-seq
updated 11 months ago by 43k • written 5.8 years ago by ▴ 10
0
votes
2
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3.4k
views
News: Course: Practical GWAS using Linux and R. 23-27 October 2017, Berlin (Germany)
GWAS Linux R
updated 11 months ago by 43k • written 6.7 years ago by ★ 2.5k
5
votes
2
replies
1.5k
views
News: Google Dataset Search
google
updated 11 months ago by 43k • written 5.6 years ago by 161k
1
vote
2
replies
1.7k
views
News: Workshop: Data analysis in high throughput biology. deadline today (2 places left)
next-gen R RNA-Seq
updated 11 months ago by 43k • written 7.0 years ago by ★ 2.5k
1
vote
2
replies
1.7k
views
News: NCBI Datasets - try it out!
Assembly refseq genome ncbi
updated 10 months ago by 43k • written 4.1 years ago by ★ 3.7k
2
votes
2
replies
942
views
News: Interested in Machine Learning?
deep-learning machine-learning
updated 11 months ago by 43k • written 5.0 years ago by ★ 2.5k
0
votes
2
replies
692
views
News: Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
ensembl
updated 10 months ago by 43k • written 4.5 years ago by 23k
13
votes
2
replies
1.5k
views
News: Thank you Biostars!
meta
updated 11 months ago by 43k • written 5.0 years ago by ▴ 140
5
votes
2
replies
1.7k
views
News: #scRNABIO & organoids meeting
single-cell-sequencing microfluidics organoids
updated 11 months ago by 43k • written 5.7 years ago by ▴ 320
0
votes
2
replies
923
views
News: The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics radseq stacks
updated 7 months ago by ★ 1.7k • written 7 months ago by ▴ 110
0
votes
1
reply
789
views
News: Advanced R Programming Course
R
updated 11 months ago by 43k • written 6.0 years ago by ★ 2.5k
0
votes
1
reply
1.1k
views
News: New Alexa skill provides voice-based access to Protein Data Bank data
protein-structure pdb
updated 11 months ago by 43k • written 6.5 years ago by • 0
6
votes
1
reply
2.9k
views
News: "Oxford University Press to Publish NAR Genomics and Bioinformatics"
journal
updated 11 months ago by 43k • written 5.0 years ago by 161k
3
votes
1
reply
2.3k
views
News: NCBI : New API Keys for the E-utilities
pubmed eutils ncbi api
updated 11 months ago by 43k • written 6.5 years ago by 161k
4
votes
1
reply
1.8k
views
News: Bioinformatics Contest 2018
contest
updated 11 months ago by 43k • written 6.3 years ago by ▴ 40
900 results • Page 2 of 18
Recent Votes
Simulation of label-free bottom-up proteomics expression dataset
How to normalize long-read RNA-seq data for comparison with short-reads
EdgeR analysis with CPM normalzed counts
Alternative splicing convention
cellular niches analysis with spatial transcriptome data in Seurat and Bioconductor
Answer: Seurat merge and batch correction
Comment: How to convert plink files to Hapmap Format
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Popular Question to sil_bioinfo ▴ 40
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Answer: Rare Disease Variant Pathway Analysis by The_PyPanda ▴ 10
Thank you LauferVA, Your advice has been useful and I now a lot to think about and read. Also, I just wanted to clarify I do not ha…
Comment: CDS vs cDNA vs transcript for mapping RNA-Seq reads by Antonio R. Franco ★ 5.1k
You cannot do it with Kallisto either. In fact, the indexation will fail in attempting to index a genome file
Comment: PCA plot by ATpoint 82k
What is your question? Add details and clarity. Ask a precise question and please avoid opening more questions on the same underlying issue…
Comment: genome assembly records not present in assembly_summary.txt by Joe 21k
If you have the accession numbers can you not use something like `eutils`?
Comment: what is the purpose of indexing the reference genome (Kallisto) by ATpoint 82k
For question 1: For question 1: Purpose of indexing a genome/transcriptome/book/anything: https://www.biostars.org/p/212594/ For question …
Comment: Create a new bed file with all pairwise combinations between two other bed files by Pierre Lindenbaum 161k
> Next, I tried using bedtools window but in your original post you said > tried finding the intersection of these bed files using bedto…
Comment: How to trim transcripts using information from NCBI contamination screen report by Lada ▴ 30
Thank you very much! I tried it out! This is a handy tool useful for many different applications, and in regards to my problem - although …
Comment: Create a new bed file with all pairwise combinations between two other bed files by J • 0
Thank you for replying Pierre. I first added a third column to the SNP bed file, so that I would get a range of 1 for each SNP awk 'B…
Comment: Create a new bed file with all pairwise combinations between two other bed files by Pierre Lindenbaum 161k
> using bcftools Show us what you tried
Answer: gvcf joint calling by Jeremy Leipzig 22k
> Hi, guys, there is a question about the genomic gVCF file. I wonder > that since gVCF contains the non-var block records, why after merge…
Comment: Missing protein (VEGF-A) in String db by shalespringer • 0
Thank you for replying here; this helped me figure out why MAPK10 was missing from my results. It was also marked as a pseudogene in the En…
Comment: How to convert plink files to Hapmap Format by Sofia • 0
These are the first lines of the output: (Please is it normal to have NA in the P value column ?) CHR …
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by atowns21 • 0
So I used the barcodes that I created (combos of positions 1-10 and 11-20) and I obtained similar alignment stats as the paper I pulled the…
Comment: How to convert plink files to Hapmap Format by Sofia • 0
Thank you so much, it actually worked!
Answer: Rare Disease Variant Pathway Analysis by LauferVA 4.2k
Hi @efc1e545 , First a caveat. the information we most need in order to help guide you to a successful conclusion is not provided in thi…
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