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News: Programming for Biomedical Researchers @NIH, USA,August 7 - 10, 2018
programming researchers
updated 11 months ago by 43k • written 5.8 years ago by ▴ 140
4
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0
replies
1.0k
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News: SIG Workshop to discuss developments in computational pathology and its interfacing opportunities with bioinformatics during ECCB 2018
microscopy wsi digital-pathology
updated 11 months ago by 43k • written 5.8 years ago by ▴ 40
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4
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1.0k
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News: Pan-Structural Variation hackathon in the Cloud!
SV sequencing
updated 11 months ago by 43k • written 4.3 years ago by 9.7k
0
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0
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1.0k
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News: Bioinformatic Analysis of Next Generation Sequencing Data @NIH
next-gen seq-data training
updated 12 months ago by 43k • written 6.1 years ago by ▴ 140
0
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0
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1.0k
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News: RNA-seq Data Analysis Workshop @ Edinburgh Genomics
Linux R RNA-Seq course
updated 11 months ago by 43k • written 4.8 years ago by ▴ 40
0
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0
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1.0k
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News: Course - Proteomics Using R/Bioconductor in Berlin
R Proteomics Bioconductor
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
1
vote
1
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1.0k
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News: Conference news: Final list of speakers for DataTech19, Scotland's data science conference
python data-science R hpc
updated 11 months ago by 43k • written 5.3 years ago by ▴ 20
0
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0
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1.0k
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News: CRISPR Genome Editing
genome CRISPR
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.5k
0
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0
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1.0k
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News: Paleogenomics course in Berlin
next-gen-sequencing aDNA
updated 11 months ago by 43k • written 5.1 years ago by ★ 2.5k
1
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0
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1.0k
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News: Phylogenomics course in Berlin
next-gen SNP
updated 12 months ago by 43k • written 6.2 years ago by ★ 2.5k
1
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0
replies
1.0k
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News: Genomic Data Visualization using R
R
updated 11 months ago by 43k • written 5.3 years ago by ★ 2.5k
0
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0
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1.0k
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News: Registration open (BioSB PhD course): Machine Learning for Bioinformatics and Systems Biology, 7-11 October 2019, Amsterdam/Delft, The Netherlands
machine-learning course
updated 11 months ago by 43k • written 4.9 years ago by ▴ 20
0
votes
1
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1000
views
News: Data visualization with Python
snp next-gen sequencing
updated 11 months ago by 43k • written 5.6 years ago by ★ 2.5k
5
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0
replies
999
views
News: Free online Ensembl REST API training
perl rest-api jupyter python ensembl
updated 11 months ago by 43k • written 5.4 years ago by 23k
0
votes
0
replies
994
views
News: Genomic data Visualisation and Manipulation using Python (DVMP02)
genome
updated 11 months ago by 43k • written 5.0 years ago by ▴ 60
0
votes
1
reply
994
views
News: Genomic bioinformatics service provider
next-gen-sequencing genome RNA-Seq ChIP-Seq
updated 11 months ago by 43k • written 5.5 years ago by • 0
0
votes
0
replies
991
views
News: Training in Data Integration, Analysis and Visualization @NIH, December 11-14,2018
data-analysis data-integration data-visualization Training
updated 11 months ago by 43k • written 5.5 years ago by ▴ 140
0
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1
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989
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News: FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS RNA-Seq Workshop
3 months ago by David Langenberger 11k
0
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0
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989
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News: Training in Molecular Modeling and Molecular Dynamics @NIH, December 4-7,2018
Molecular-Modeling Molecular-Dynamics Training
updated 11 months ago by 43k • written 5.5 years ago by ▴ 140
1
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0
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988
views
News: NCBI Webinar: New Variation Services for Normalizing, Remapping, and Annotating Variants
Variation dbsnp API SPDI Clinvar
updated 11 months ago by 43k • written 5.3 years ago by ▴ 70
0
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0
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987
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News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
training RNA-Seq next-gen
updated 11 months ago by 43k • written 5.1 years ago by ▴ 140
0
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0
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984
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News: Training in Computational Drug Design and Discovery @NIH, USA .November 5-8,2018
computational-drug-design training discovery
updated 11 months ago by 43k • written 5.6 years ago by ▴ 140
0
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0
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984
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News: Pathview Web server down 2/12-2/13 (EST)
Pathview visualization Pathview-Web
updated 12 months ago by 43k • written 6.3 years ago by ▴ 430
2
votes
0
replies
983
views
News: Long-read nanopore Sequencing course
software-error Long-reads assembly nanopore Pacbio
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
6
votes
0
replies
978
views
News: CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
cwl thanks
updated 11 months ago by 43k • written 4.6 years ago by ★ 1.9k
0
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0
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978
views
News: National workshop on APPLIED DATA SCIENCE
sequencing
updated 11 months ago by 43k • written 5.6 years ago by • 0
2
votes
0
replies
978
views
News: Registration open for Galaxy Community Conference (GCC) 2019
galaxy
updated 11 months ago by 43k • written 5.2 years ago by 104k
3
votes
1
reply
972
views
News: Course - Genomics with R and Bioconductor - Berlin
R Bioconductor
updated 11 months ago by 43k • written 4.9 years ago by ★ 2.5k
0
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0
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971
views
News: Free Webinar: Biomedical Data, Simplified
data-analysis data-visualization
updated 11 months ago by 43k • written 5.6 years ago by ▴ 10
0
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0
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971
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News: R Package design and development and reproducible data science for biologists - FREE ACCOMMODATION
R
updated 11 months ago by 43k • written 4.7 years ago by ▴ 110
0
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0
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967
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News: Snakemake: Reproducible and Scalable Bioinformatic Workflows
next-gen
updated 11 months ago by 43k • written 5.4 years ago by ★ 2.5k
1
vote
0
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966
views
News: UniProtKB: Change of the annotation topic 'Enzyme regulation' to 'Activity regulation', not before Sep 12th, 2018
UniProt
updated 12 months ago by 43k • written 6.0 years ago by ★ 2.4k
0
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0
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966
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News: NGS Data Analysis Trainings (Classroom and Online)
RNA-Seq Training DNA-Seq
updated 11 months ago by 43k • written 3.9 years ago by 11k
0
votes
0
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964
views
News: Applied Statistics and Bioinformatics with R and Bioconductor
R next-gen Bioconductor
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.5k
2
votes
0
replies
964
views
News: GWAS course in Canada
GWAS
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.5k
0
votes
0
replies
963
views
News: Programming for Biomedical Researchers @NIH, USA,April 24-27, 2018
biomedical researchers training Programming
updated 12 months ago by 43k • written 6.2 years ago by ▴ 140
3
votes
1
reply
962
views
News: Results are now available for the precisionFDA NCI-CPTAC Multi-omics Enabled Sample Mislabeling Correction Challenge!
precisionFDA NCI challenge algorithm multi-omics
updated 11 months ago by 43k • written 5.3 years ago by ▴ 60
0
votes
0
replies
959
views
News: 2019 Galaxy Community Conference: Deadlines this week and next
GCC2019
updated 11 months ago by 43k • written 5.0 years ago by ▴ 610
0
votes
0
replies
957
views
News: Workshop_RAD-seq data analysis in Berlin (2-6 July 2018 )
RADseq SNP Stacks
updated 12 months ago by 43k • written 6.0 years ago by ★ 2.5k
3
votes
1
reply
955
views
News: Do you want to learn how to analyze your genomic data using R and Bioconductor?
Genomics R Bioconductor
updated 11 months ago by 43k • written 4.8 years ago by ★ 2.5k
2
votes
0
replies
955
views
News: Course: Approaches and Computational tools for CRISPR Genome editing
Genome-Editing CRISPR
updated 11 months ago by 43k • written 4.9 years ago by ★ 2.5k
1
vote
0
replies
954
views
News: Paperkast.com - paper discussion and sharing
website
updated 11 months ago by 43k • written 5.8 years ago by ▴ 30
0
votes
0
replies
954
views
News: Coderefinery workshop - Teaching researchers in sustainable software development
Reproducibility FAIR git workshop
updated 11 months ago by 43k • written 5.4 years ago by 8.6k
2
votes
2
replies
953
views
News: Interested in Machine Learning?
deep-learning machine-learning
updated 11 months ago by 43k • written 5.1 years ago by ★ 2.5k
0
votes
0
replies
951
views
News: NGS Data Analysis Training for Researchers - March 25-27 in Munich
NGS data-analysis training workshop
updated 11 months ago by 43k • written 4.4 years ago by 11k
5
votes
0
replies
949
views
News: sharing BiocWorkshops 2018
limma edgeR DESeq2 RNA-seq glimma
updated 11 months ago by 43k • written 5.7 years ago by ★ 1.4k
0
votes
0
replies
949
views
News: Course: Introduction to Python
programming Python
updated 11 months ago by 43k • written 5.7 years ago by ★ 2.5k
1
vote
1
reply
947
views
News: Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
detection webinar RNA-Seq gene-fusion
updated 11 months ago by 43k • written 4.3 years ago by ▴ 40
0
votes
0
replies
946
views
News: Introduction to Python for biologists - discounted places
next-gen RNA-Seq gene
updated 12 months ago by 43k • written 6.0 years ago by ▴ 60
0
votes
0
replies
946
views
News: Comparative Genomics Workshop (Berlin, 1-5 October 2018)
snp assembly SV
updated 11 months ago by 43k • written 5.7 years ago by ★ 2.5k
731 results • Page 6 of 15
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Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Answer: RNAseq coverage vs depth for transcript isoform expression?
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Comment: ChatGPT optimized for bioinformatics questions
C: How can I perform Differential expression analysis with just one control and one
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Recent Replies
Comment: calculating genomic coverage/ base overlap in R by 1769mkc ★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks by ATpoint 82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner by Joe 21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression? by Gordon Smyth ★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Table 1 o…
Comment: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA by mavy ▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object by Alex Reynolds 35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF) by aidangcruickshank ▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data? by Ngrin • 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2 by swbarnes2 14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot by LauferVA 4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
Answer: GG Sankey plot by bk11 ★ 2.5k
You need to change your data table into a 'long' format. You can do something like this- GOs_childs_recursive <- GOs_childs_recursive …
Answer: Trimming tool by ntsopoul ▴ 60
I use Trim Galore which automatically recognizes adaptors. https://github.com/FelixKrueger/TrimGalore Here is the script I am using for…
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