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News: VCFclin working group
vcfclin
updated 13 months ago by 43k • written 10.0 years ago by ▴ 30
2
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4
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1.5k
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News: Online training - Snakemake: Reproducible and Scalable Bioinformatic Workflows
Snakemake Pipeline
2.4 years ago by carlopecoraro2 ★ 2.5k
3
votes
4
replies
2.0k
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News: OmicCircos was updated
R OmicCircos
updated 23 months ago by 43k • written 9.1 years ago by ▴ 50
1
vote
4
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1.8k
views
News: Bioconductor Development Visualization
bioconductor
updated 21 months ago by 43k • written 9.0 years ago by 26k
9
votes
4
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1.6k
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News: Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 11 months ago by 43k • written 6.2 years ago by ★ 1.8k
10
votes
4
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984
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News: Good morning
good morning
updated 19 months ago by 100k • written 19 months ago by 87k
2
votes
4
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2.0k
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News: Reminder: Igb Tutorial Starts In 30 Minutes
visualization genome-browser RNA-seq
updated 14 months ago by 43k • written 10.6 years ago by ★ 2.4k
2
votes
4
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1.2k
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News: Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
R RNA-seq Bioconductor
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
19
votes
4
replies
2.5k
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News: How to analyze NGS data: An overview of nine different IT solutions
NGS RNA-Seq DNA-Seq
updated 12 months ago by 43k • written 7.5 years ago by 11k
15
votes
4
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4.7k
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News: Workshop: Genomic Data Visualization and Interpretation (Berlin, Germany)
dataviz GenVisR next-gen R
updated 12 months ago by 43k • written 7.1 years ago by ★ 2.5k
6
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4
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4.3k
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News: awesome-single-cell: a list of open-source single-cell analysis software and workshop materials
single-cell RNA-Seq
updated 12 months ago by 43k • written 7.8 years ago by 26k
8
votes
4
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2.0k
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News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 10 months ago by 43k • written 4.6 years ago by ★ 2.4k
14
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4
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3.4k
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News: FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq next-gen NGS
updated 21 months ago by 43k • written 8.2 years ago by 11k
1
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4
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2.0k
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News: webserver of TCGA data www.tcgaportal.org
genome RNA-Seq TCGA gene
updated 11 months ago by 43k • written 5.9 years ago by ▴ 40
6
votes
4
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1.7k
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News: Genomic variation course at the EBI - Updated
Ensembl 1000Genomes snps variation
updated 12 months ago by 43k • written 8.1 years ago by 23k
12
votes
4
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2.0k
views
News: #NGSchool2018 summer school in bioinformatics
NGSchool Personalised-Medicine Nanopore
updated 11 months ago by 43k • written 5.9 years ago by ▴ 290
9
votes
3
replies
4.8k
views
News: Bioinformatics Contest 2020. Call for problems
contest
updated 10 months ago by 43k • written 4.6 years ago by ▴ 920
0
votes
3
replies
1.0k
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News: EMBO | EMBL Symposium: Seeing is Believing - Imaging the Molecular Processes of Life
image-analysis
updated 11 months ago by 43k • written 5.5 years ago by ▴ 10
2
votes
3
replies
3.1k
views
News: Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 14 months ago by 43k • written 11.2 years ago by 100k
8
votes
3
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1.8k
views
News: Impact of outdated gene annotations on pathway enrichment analysis
pathway-enrichment gene-ontology david go
updated 12 months ago by 43k • written 7.6 years ago by 5.1k
5
votes
3
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1.5k
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News: Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 13 months ago by 43k • written 6.7 years ago by 141k
5
votes
3
replies
904
views
News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 13 months ago by ▴ 340 • written 14 months ago by 4.5k
0
votes
3
replies
1.1k
views
News: Nvidia Clara Parabricks is FREE for R&D
nvidia workflow gpu
updated 16 months ago by 2.8k • written 16 months ago by 161k
3
votes
3
replies
1.2k
views
News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
11 months ago by PeterC_NCBI ▴ 410
20
votes
3
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2.7k
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News: Nature Comment: Core services: Reward bioinformaticians
career-path
updated 22 months ago by 43k • written 9.1 years ago by ★ 2.2k
4
votes
3
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1.0k
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News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
0
votes
3
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2.8k
views
News: Physalia-courses: 16S rRNA gene Metabarcoding Workshop
RNA-seq sequencing SNP gene sequence
updated 12 months ago by 43k • written 7.5 years ago by ★ 2.5k
0
votes
3
replies
873
views
News: NCBI update complete. Aspera users please update your client.
NCBI Submissions GenBank
14 months ago by PeterC_NCBI ▴ 410
0
votes
3
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2.4k
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News: Eukaryotic Metabarcoding workshop
next-gen blast alignment
updated 12 months ago by 43k • written 7.4 years ago by ★ 2.5k
1
vote
3
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916
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News: NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST blastx BLAST NCBI ClusteredNR
15 months ago by PeterC_NCBI ▴ 410
3
votes
3
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2.3k
views
News: Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 14 months ago by 43k • written 11.0 years ago by ▴ 830
4
votes
3
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1.9k
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News: Proteomics and Genomics Submit your Research Journals
Research Genomics Journals Proteomics
updated 17 months ago by 43k • written 8.8 years ago by • 0
2
votes
3
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1.7k
views
News: GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
Galaxy-Community-Conference BOSC GCC
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.2k
7
votes
3
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4.6k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 14 months ago by 43k • written 10.4 years ago by ★ 1.2k
7
votes
3
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1.9k
views
News: New NCBI Datasets home and documentation pages provide easier access
ncbi gene SARS-CoV-2 genome
updated 3.0 years ago by 100k • written 3.0 years ago by ▴ 50
4
votes
3
replies
3.3k
views
News: CAFE v4.0 available
phylogenetics CAFE
updated 11 months ago by 43k • written 7.1 years ago by ▴ 150
22
votes
3
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3.0k
views
News: Biostar: 10,000 Question Milestone
meta
updated 14 months ago by 43k • written 10.9 years ago by 100k
4
votes
3
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1.9k
views
News: Boston Genomics Hackathon (facilitated by NCBI)
NCBI RNA-Seq DNA-seq hackathon
updated 12 months ago by 43k • written 8.1 years ago by ▴ 330
2
votes
3
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1.4k
views
News: Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-extraction dna-extraction rna-seq
updated 11 months ago by 43k • written 5.6 years ago by ▴ 20
3
votes
3
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1.0k
views
News: Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow NGS pipeline
2.0 years ago by David Langenberger 11k
5
votes
3
replies
1.4k
views
News: Top GitHub repos for biomedicine
open-source software GitHub
updated 11 months ago by 43k • written 5.3 years ago by ▴ 50
5
votes
3
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2.1k
views
News: Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
next-gen exome variation
updated 14 months ago by 43k • written 11.6 years ago by 11k
2
votes
3
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710
views
News: NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser NCBI Alignments Genome
16 months ago by PeterC_NCBI ▴ 410
1
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3
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1.2k
views
News: 4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS RNA-Seq DNA-Seq
updated 10 months ago by 43k • written 4.2 years ago by 11k
4
votes
3
replies
3.2k
views
News: -max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
blast
updated 11 months ago by 43k • written 5.5 years ago by 11k
3
votes
3
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3.9k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 14 months ago by 43k • written 11.7 years ago by 100k
2
votes
3
replies
2.1k
views
News: PDX Models: Tumor-stroma interaction
transcriptome pdx R ChIP-Seq
updated 11 months ago by 43k • written 6.8 years ago by ▴ 70
0
votes
3
replies
2.2k
views
News: Bioinformatics National Certification Examination (BINC)
BINC
updated 12 months ago by 43k • written 8.0 years ago by • 0
0
votes
3
replies
1.2k
views
News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 16 months ago by 43k • written 22 months ago by ▴ 10
6
votes
3
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2.4k
views
News: Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
ChIP-Seq next-gen RNA-Seq
updated 12 months ago by 43k • written 7.2 years ago by • 0
1,000 results • Page 3 of 20
Recent Votes
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
how to combine multiple RNAseq count files into a single dataframe in R and unix
Answer: genome assembly records not present in assembly_summary.txt
Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
A: How to process (seems) Agilent microarrry data?
Comment: genome assembly records not present in assembly_summary.txt
Answer: genome assembly records not present in assembly_summary.txt
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Recent Replies
Comment: Low mapping rate with Salmon by i.sudbery 19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format by bk11 ★ 2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value. https://www.b…
Comment: genome assembly records not present in assembly_summary.txt by sapuizait ▴ 10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question by bk11 ★ 2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon by GenoMax 141k
> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes? Reads are likely aligning in regions wh…
Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File? by cmdcolin ★ 3.8k
the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
Comment: Low mapping rate with Salmon by Patadu94 • 0
I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
Comment: Low mapping rate with Salmon by Patadu94 • 0
For doing this, should I just look at the log.out.file?
Answer: Heatmap and rna-seq by pinheirofabiano ▴ 10
install.packages("pheatmap") library(pheatmap) setwd("/Users/data_analysis/results") data <- read.table(file…
Comment: Low mapping rate with Salmon by Patadu94 • 0
Thanks for the link GenoMax. But I was wondering, should not alignment and mapping have a similar rate and thus be correlated? In my case I…
Answer: Create a new bed file with all pairwise combinations between two other bed files by Pierre Lindenbaum 161k
bedtools intersect \ -a <(sort -t $'\t' -k1,1 -k2,2n A.bed) \ -b <(awk '{X=250000;P=int($2);printf("%s\t%d\…
Comment: Create a new bed file with all pairwise combinations between two other bed files by J • 0
The command lines I wrote out for you are the ones I actually used. My original reference to bedtools intersect was because I assumed the b…
Comment: ScRNA data question by starswillfade ▴ 10
I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
Comment: ScRNA data question by starswillfade ▴ 10
![enter image description here][1] I am already using Seurat V5 I think. I am using SCTransform as it was recommended by the seurat page. I…
Answer: genome assembly records not present in assembly_summary.txt by GenoMax 141k
Can you clarify what `metainfo` you are referring to? The accession that you refer to does exist in [**GenBank assembly_summary file**][1…
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