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1,000 results • Page
5 of 20
Sort: Votes
Rank
Views
Votes
Replies
8
votes
8
replies
1.9k
views
Sequence alignment algorithm for big size genes in MATLAB
alignment
Matlab
next-gen
7.0 years ago by
r.tor
▴ 50
8
votes
6
replies
2.3k
views
Using Bandage to finish ambiguous long-read assembly?
Assembly
Bandage
long reads
Unicycler
updated 5.3 years ago by
Biostar
20 • written 5.4 years ago by
predeus
★ 2.0k
8
votes
5
replies
14k
views
The comparison between HISAT2 and Tophat2
RNA-Seq
Tophat2
HISAT2
updated 5.7 years ago by
Ram
43k • written 8.3 years ago by
Peng Huang
▴ 50
8
votes
8
replies
2.8k
views
Making chain files
Assembly
genome
alignment
sequence
updated 4.8 years ago by
Biostar
20 • written 4.8 years ago by
mc2548
▴ 50
8
votes
4
replies
2.4k
views
Global Sequence Alignment
alignment
11.0 years ago by
behrang
• 0
8
votes
11
replies
5.0k
views
Increasing kmer limit in SPAdes
Assembly
Bacterial
Spades
Velvet
7.8 years ago by
rrcutler
▴ 120
8
votes
11
replies
3.6k
views
Semantic Similarity selection in REVIGO: which is better? many clusters or few?
go
revigo
gene ontology
6.5 years ago by
Farbod
★ 3.4k
8
votes
15
replies
2.0k
views
RNAseq differential expression analysis : no significative FDR but significative GO enrichment
RNA-Seq
differential expression
4.6 years ago by
guillaume.rbt
★ 1.0k
8
votes
4
replies
2.3k
views
Implementing a naive javascript-based de Bruijn graph
debruijn
graph
javascript
algorithm
8.0 years ago by
Pierre Lindenbaum
161k
8
votes
4
replies
3.2k
views
How to use machine learning in Fastq/Fasta data?
machine learning
fasta
fastq
sequencing
7.0 years ago by
inkprs
▴ 70
8
votes
5
replies
1.1k
views
Bioinformatics Definitions
genome
updated 2.9 years ago by
Dunois
★ 2.5k • written 2.9 years ago by
joe_genome
▴ 40
8
votes
7
replies
6.0k
views
Download human 3 UTR FASTA file
genome
8.2 years ago by
bharata1803
▴ 560
8
votes
25
replies
3.1k
views
construction of a database
sql
noSQL
neo4j
database
updated 14 months ago by
Ram
43k • written 3.0 years ago by
Debut
▴ 20
8
votes
7
replies
4.3k
views
ORF finder script
orf
open reading frame
bash
shell
sequencing
7.4 years ago by
ahm3dhany
▴ 20
8
votes
11
replies
1.9k
views
Sending files to Galaxy
Galaxy
fastq
7.6 years ago by
statfa
▴ 760
8
votes
14
replies
2.5k
views
6 follow
kallisto pseudoalignment rate is lower than literature
pseudoalignment
kallisto
RNA-seq
2.9 years ago by
johnsonqinz
• 0
8
votes
5
replies
3.2k
views
7 follow
What is the best way to merge multiple fasta files containing contigs?
Assembly
Anvi’o
fasta
updated 5.3 years ago by
zx8754
11k • written 5.3 years ago by
anastasia.gs17
• 0
8
votes
20
replies
2.5k
views
Converting runpsipred Script to Work on Windows OS
psipred
windows
updated 24 months ago by
Ram
43k • written 5.8 years ago by
Bara'a
▴ 270
8
votes
12
replies
4.3k
views
Use BLAST Command Line Applications to run a folder of many sequences against a database
BLAST
updated 14 months ago by
Ram
43k • written 2.8 years ago by
daver.v
▴ 30
8
votes
7
replies
6.9k
views
I got low overall alignment rate running HiSAT2
RNA-Seq
hisat
hisat2
alignment
7.7 years ago by
sslee1015
• 0
8
votes
20
replies
2.7k
views
Getting read depth for normal and tumour
R
WGS
vcf
5.1 years ago by
zizigolu
★ 4.3k
8
votes
10
replies
2.0k
views
FASTA of translated amino acid sequences in their six reading frames, which one is the optimal?
aminoacid
protein
peptide
Reading
optimal
frames
2.8 years ago by
Luis999
▴ 20
8
votes
5
replies
1.7k
views
differential expression analysis with DESeq2 & edgeR
RNA-Seq
3.5 years ago by
Rob
▴ 170
8
votes
16
replies
1.4k
views
what is the ideal normalistation methods for TCGA gene expression or DNA methylation dtasets?
gene
next-gen
4.4 years ago by
Chaimaa
▴ 260
8
votes
9
replies
1.5k
views
superimpose
discovery
ds
visualizer
2.9 years ago by
Alex
▴ 20
8
votes
7
replies
603
views
adjusting parameters in ViolinPlot did not work
single-cell
updated 3 months ago by
Ram
43k • written 3 months ago by
synat.keam
▴ 100
8
votes
30
replies
5.3k
views
Per Base Sequence Content
sequencing
fastqc
genome
sequence
updated 4.2 years ago by
wm
▴ 560 • written 4.2 years ago by
Researcher
▴ 20
8
votes
3
replies
3.4k
views
which tool is used for separating forward and reverse from paired end fastq
Assembly
6.8 years ago by
ranjini.shakthi
• 0
8
votes
8
replies
1.8k
views
6 follow
DESeq2 adjusted p-values of 0 when p-value > 0.05
RNA-seq
DEseq2
updated 3.0 years ago by
rodolfo.peacewalker
▴ 390 • written 3.0 years ago by
Adrian
• 0
8
votes
9
replies
3.1k
views
error in rstudio
csv
matrix
rstudio
updated 19 months ago by
Ram
43k • written 8.7 years ago by
zizigolu
★ 4.3k
8
votes
14
replies
2.6k
views
RNA-Seq analysis with standard p-value
RNA-Seq
7.3 years ago by
####
▴ 220
8
votes
4
replies
2.2k
views
Use Of Terms In Genome-Wide Analysis: Phenotype / Functionality / Fitness
12.8 years ago by
2184687-1231-83-
★ 5.1k
8
votes
11
replies
2.0k
views
using STAR instead of HISAT2
STAR
updated 22 months ago by
Ram
43k • written 22 months ago by
Chris
▴ 280
8
votes
17
replies
4.0k
views
Getting nan value in vcftool relatedness command?
vcftools
relatedness
6.3 years ago by
Sharon
▴ 610
8
votes
4
replies
873
views
Correlation network analysis
rna-seq
3.4 years ago by
Lepomis_8
▴ 30
8
votes
3
replies
5.3k
views
Bioinformatics project for a beginner
projects
updated 22 months ago by
Ram
43k • written 8.4 years ago by
dharshank.1096
▴ 30
8
votes
11
replies
4.1k
views
STAR can not detect this chimeric read
RNA-Seq
fusion
STAR
updated 7.5 years ago by
Biostar
20 • written 7.7 years ago by
Nicolas Rosewick
11k
8
votes
13
replies
1.7k
views
Mapped reads not mapping to a real sequence?
bam
sam
samtools
kallisto
15 months ago by
txema.heredia
▴ 130
8
votes
14
replies
2.4k
views
6 follow
Definition of "=" in comparing two genes
sequencing
gene
updated 2.5 years ago by
Ram
43k • written 9.9 years ago by
rdorey
• 0
8
votes
1
reply
8.6k
views
Correlation heatmaps: use correlation as clustering distance or not?
heatmap
RNA-Seq
clustering
5.1 years ago by
CuriousGuy
▴ 90
8
votes
6
replies
967
views
How to create a Venn Diagram for overlapping SVs from a merged VCF
truvari
structural-variants
r
vcf
venn-diagram
6 months ago by
Matteo Ungaro
▴ 100
8
votes
8
replies
1.5k
views
microRNA-seq sequence lenght distribution after trimming
alignment
rna-seq
5.4 years ago by
szabo.marton
▴ 10
8
votes
5
replies
3.6k
views
Is it possible to guess sequencing platform used based on a FASTQ/BAM file?
BAM
FASTQ
updated 17 months ago by
Ram
43k • written 8.9 years ago by
Andrew
▴ 60
8
votes
14
replies
6.0k
views
Error in BWA-MEM running in linux
RNA-Seq
BWA-MEM
alignment
updated 6.0 years ago by
GenoMax
142k • written 6.0 years ago by
modarzi
▴ 170
8
votes
6
replies
5.7k
views
miRanda output meaning?
rna-seq
updated 7.0 years ago by
WouterDeCoster
47k • written 7.0 years ago by
stijn.vandenbrande
▴ 40
8
votes
7
replies
4.1k
views
Error with Bowtie 2
bowtie2
alignment
6.9 years ago by
valerie
▴ 100
8
votes
7
replies
3.9k
views
6 follow
Compatibility between my reference genome and GTF file
rna-seq
hisat2
alignment
reference genome
5.6 years ago by
Batu
▴ 250
8
votes
5
replies
913
views
Why some genome assemblies don't have annotation?
genome
assembly
5.1 years ago by
860101959
▴ 10
8
votes
4
replies
2.0k
views
using different tools to identify differential exprssed genes
rna-seq
RNA-Seq
R
updated 19 months ago by
Ram
43k • written 8.7 years ago by
Anushka
▴ 20
8
votes
11
replies
2.7k
views
directionality of RRBS
directional
non-directional
RRBS
updated 2.8 years ago by
Papyrus
★ 2.9k • written 2.9 years ago by
basuanubhav
▴ 140
1,000 results • Page
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Recent Votes
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how has this code progressed? is it publically available? would you want to work together?
Comment: Design for complex RNA-Seq experiment using Deseq2
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Hi, you can add statistical annotations using `ggpubr` function `stat_pvalue_manual `. You need to make sure you calculate the p-values fir…
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did you ever figure it out? i'm having the same issue.
Comment: Traveler with Infernal mapping failed
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Comment: constructing pangenome through psvcp
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Fixed the issue by updating nucmer version.
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See the exploration of isoform estimation precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167.…
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Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
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